format-version: 1.2
data-version: 2013-05-14
date: 14:05:2013 16:20
saved-by: midori
auto-generated-by: OBO-Edit 2.3-beta5
subsetdef: abnormal_slim "Abnormal/normal slim"
subsetdef: absent_slim "Absent/present slim"
subsetdef: attribute_slim "Attribute slim"
subsetdef: biosapiens "biosapiens protein feature ontology"
subsetdef: cell_quality "cell_quality"
subsetdef: Cross_product_review "Involved_in"
subsetdef: cyclostome_subset "cyclostome structures"
subsetdef: DBVAR "database of genomic structural variation"
subsetdef: defined_by_ordinal_series "classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology"
subsetdef: developmental_classification "developmental_classification"
subsetdef: disjointness_axiom_removed "A class which has a weakened disjointness axiom, to avoid inconsistency. These are kept separately in the uberon_disjoint_from_strict ontology."
subsetdef: disposition_slim "Disposition slim"
subsetdef: dubious_grouping "Indicates that subclasses in AOs may be inappropriately linked"
subsetdef: early_development "A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes."
subsetdef: emapa_ehdaa2 "derived from the union of EHDAA2 and EMAPA - still to be checked"
subsetdef: functional_classification "functional_classification"
subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation"
subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation"
subsetdef: goslim_aspergillus "Aspergillus GO slim"
subsetdef: goslim_candida "Candida GO slim"
subsetdef: goslim_generic "Generic GO slim"
subsetdef: goslim_goa "GOA and proteome slim"
subsetdef: goslim_metagenomics "Metagenomics GO slim"
subsetdef: goslim_pir "PIR GO slim"
subsetdef: goslim_plant "Plant GO slim"
subsetdef: goslim_pombe "Fission yeast GO slim"
subsetdef: goslim_yeast "Yeast GO slim"
subsetdef: gosubset_prok "Prokaryotic GO subset"
subsetdef: grouping_class "Subset consisting of classes creating for grouping purposes"
subsetdef: high_level_annotation_qc "High-level terms not to be used for direct annotation"
subsetdef: inconsistent_with_fma "classes that have some inconsistency with FMA"
subsetdef: inherited_grouping_class "A grouping class that originates in two or more separate anatomical ontologies. Includes 'region of X' type terms"
subsetdef: loose_concept "loose concept"
subsetdef: major_organ "somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads"
subsetdef: metazoa_core "core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out"
subsetdef: mf_needs_review "Catalytic activity terms in need of attention"
subsetdef: mpath_slim "Pathology slim"
subsetdef: non_informative "abstract class brought in to group ontology classes but not informative"
subsetdef: organ_slim "organs, excluding individual muscles and skeletal elements"
subsetdef: phenotype_rcn "A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA"
subsetdef: qc_do_not_annotate "Term not to be used for direct annotation"
subsetdef: qc_do_not_manually_annotate "Term not to be used for direct manual annotation"
subsetdef: relational_slim "Relational slim: types of quality that require an additional entity in order to exist"
subsetdef: scalar_slim "Scalar slim"
subsetdef: SOFA "SO feature annotation"
subsetdef: termgenie_unvetted "Terms created by TermGenie that do not follow a template and require additional vetting by editors"
subsetdef: uberon_slim "Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms"
subsetdef: ubprop:upper_level "abstract upper-level terms not directly useful for analysis"
subsetdef: unverified_taxonomic_grouping "Indicates that the class encompasses classes from other AOs that have not been verified"
subsetdef: unvetted ""
subsetdef: upper_level "abstract upper-level terms not directly useful for analysis"
subsetdef: upper_ontology_conflict "Terms in this subset group together terms from different anatomy ontologies that have conflicting upper ontology/CARO assignments. For example, in FMA the naris is immaterial and in ZFA it is an organism subdivision."
subsetdef: value_slim "Value slim"
subsetdef: vertebrate_core "core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO"
subsetdef: vessel_or_tree "A term classified differently in FMA due to its treatment of branching structures - to be reviewed and revised by editors"
subsetdef: virus_checked "Viral overhaul terms"
synonymtypedef: aa1 "amino acid 1 letter code" 
synonymtypedef: aa3 "amino acid 3 letter code" 
synonymtypedef: AAMOD "amino acid modification" 
synonymtypedef: ABBREVIATION "abbreviation" 
synonymtypedef: ATTRIBUTION_REQUIRED "expert consultation and attribution required" 
synonymtypedef: BRAND_NAME "BRAND NAME" 
synonymtypedef: BS "biosapiens" 
synonymtypedef: dbsnp "dbsnp variant terms" 
synonymtypedef: dbvar "DBVAR" 
synonymtypedef: DEPRECATED "A historic synonym, no longer encouraged" 
synonymtypedef: DEVELOPMENTAL "developmental term" 
synonymtypedef: DUBIOUS "dubious or contested synonym" 
synonymtypedef: ebi_variants "ensembl variant terms" 
synonymtypedef: FORMULA "FORMULA" 
synonymtypedef: GE "LANGUAGE GERMAN" 
synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species" 
synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens" 
synonymtypedef: InChI "InChI" 
synonymtypedef: InChIKey "InChIKey" 
synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species" 
synonymtypedef: INN "INN" 
synonymtypedef: IUPAC_NAME "IUPAC NAME" 
synonymtypedef: LATIN "latin term" 
synonymtypedef: PLURAL "plural term" 
synonymtypedef: PRO-short-label "Unique short label for PRO terms for display purposes" EXACT
synonymtypedef: PSI-MOD-label "Unique short label curated by PSI-MOD" EXACT
synonymtypedef: RNAMOD "RNA modification" EXACT
synonymtypedef: SCI "SCIENTIFIC NAME" 
synonymtypedef: SENSU "taxonomic disambiguation" 
synonymtypedef: SMILES "SMILES" 
synonymtypedef: systematic_synonym "Systematic synonym" EXACT
default-namespace: fission_yeast_phenotype
remark: svn version: $Revision: 654 $
ontology: fypo

[Term]
id: FYPO:0000001
name: phenotype
def: "Any of the set of observable characteristics of an organism resulting from the interaction of its genotype with the environment." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast phenotype" EXACT [PomBase:mah]
creation_date: 2011-03-16T03:59:25Z

[Term]
id: FYPO:0000002
name: cell phenotype
def: "A phenotype that is observed at the level of an individual cell." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast cell phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000001 ! phenotype
created_by: midori
creation_date: 2011-03-16T04:25:28Z

[Term]
id: FYPO:0000003
name: cell population phenotype
def: "A phenotype that is observed at the level of a population of cells." [PomBase:mah]
comment: note: differentium is population level, and may reflect observation conditions
synonym: "fission yeast cell population phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000001 ! phenotype
created_by: midori
creation_date: 2011-03-16T04:26:35Z

[Term]
id: FYPO:0000004
name: cell viability
def: "A cell phenotype that consists of the cell's disposition to survive and develop normally." [PomBase:mah]
comment: Viability is usually determined under standard laboratory conditions, i.e. a cell is generally considered viable if it can grow in rich medium under normal conditions such as temperature, pressure, oxygen level, pH, etc.
is_a: FYPO:0000002 ! cell phenotype
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000005
name: abnormal cell morphology
alt_id: FYPO:0000019
def: "A cell phenotype characterized by altered cell morphology." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "cell morphology, misshapen cells" RELATED [PomBase:mah]
synonym: "cellular morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000136 ! cellular structure phenotype
is_a: FYPO:0001985 ! abnormal phenotype
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000006
name: abnormal DNA damage checkpoint
def: "A cell cycle checkpoint phenotype in which any DNA damage checkpoint is abnormal. A DNA damage checkpoint normally regulates progression through the cell cycle in response to DNA damage. In a mutant, the checkpoint may fail to activate under appropriate conditions, or may occur to a greater or lesser extent than wild type under any specified set of conditions." [PomBase:mah]
synonym: "abnormal DNA damage checkpoint activation" EXACT [PomBase:mah]
synonym: "abnormal DNA damage checkpoint during cellular response to DNA damage" EXACT [PomBase:al]
synonym: "abnormal DNA damage checkpoint during vegetative growth" EXACT [PomBase:mah]
synonym: "DNA damage checkpoint defects" EXACT [PomBase:mah]
is_a: FYPO:0000157 ! abnormal response to DNA damage stimulus
is_a: FYPO:0000643 ! abnormal DNA integrity checkpoint
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000007
name: abnormal S-phase DNA damage checkpoint
alt_id: FYPO:0000195
def: "A cell cycle checkpoint phenotype in which the S phase DNA damage checkpoint (also known as the intra-S phase DNA damage checkpoint) is abnormal. The S phase DNA damage checkpoint slows progression through S phase in response to DNA damage. In a mutant, the checkpoint may fail to activate under appropriate conditions, or may occur to a greater or lesser extent than wild type under any specified set of conditions." [PomBase:mah]
synonym: "abnormal intra-S DNA damage checkpoint" EXACT [PomBase:mah]
synonym: "abnormal S-phase DNA damage checkpoint activation" EXACT [PomBase:mah]
synonym: "abnormal S-phase DNA damage checkpoint during vegetative growth" EXACT [PomBase:mah]
synonym: "DNA damage checkpoint defects, S-phase" EXACT [PomBase:mah]
is_a: FYPO:0000006 ! abnormal DNA damage checkpoint
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000008
name: abnormal meiotic recombination
def: "A cellular process phenotype in which reciprocal meiotic recombination is abnormal. Meiotic recombination is a cellular process in which double strand breaks are formed and repaired through a double Holliday junction intermediate, resulting in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes." [GO:0007131, PomBase:mah]
synonym: "abnormal meiotic DNA recombination" EXACT [PomBase:mah]
synonym: "abnormal reciprocal meiotic recombination" EXACT [PomBase:mah]
synonym: "DNA recombination defects, meiotic" EXACT [PomBase:mah]
synonym: "meiotic recombination: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000063 ! abnormal DNA recombination
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000009
name: abnormal cell adhesion during vegetative growth
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which adhesion of a cell to a substrate or another cell is abnormal." [PomBase:mah]
synonym: "adhesion defects during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
is_a: FYPO:0001872 ! abnormal cell adhesion
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000010
name: abolished cell-substrate adhesion
def: "A cell adhesion phenotype observed in the vegetative growth phase of the life cycle in which cells fail to adhere to a substrate." [PomBase:mah]
synonym: "cell-substrate adhesion abolished" EXACT [PomBase:mah]
synonym: "cell-substrate adhesion abolished during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000009 ! abnormal cell adhesion during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000011
name: abnormal cell cycle progression
alt_id: FYPO:0000406
def: "A cellular process phenotype in which a cell does not proceed normally through a cell cycle." [PomBase:mah]
synonym: "abnormal cell-division cycle" EXACT [GO:0007049, PomBase:mah]
synonym: "cell cycle defects" EXACT [PomBase:mah]
synonym: "cell cycle progression: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000628 ! abnormal cellular process
is_a: FYPO:0000631 ! cell cycle phenotype
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000012
name: mitotic G2/M transition delay
alt_id: FYPO:0000205
alt_id: FYPO:0000401
alt_id: FYPO:0000604
alt_id: FYPO:0000605
alt_id: FYPO:0000606
alt_id: FYPO:0000971
def: "A cell cycle phenotype in which the G2/M transition of the mitotic cell cycle takes place later than normal. The duration of G2 phase is thus longer than normal." [PomBase:mah]
comment: A G2/M delay may indicate that a checkpoint, such as the DNA replication checkpoint or the G2/M DNA damage checkpoint, is activated. Checkpoint activation can be tested using checkpoint kinase mutants.
synonym: "cell cycle progression through the G2/M phase transition: delayed" EXACT [SGD:phenotype_annotation]
synonym: "cell cycle, mitotic G2 delay" RELATED [PomBase:mah]
synonym: "decreased rate of mitotic G2 phase progression" RELATED [PomBase:mah]
synonym: "delayed cell cycle progression through mitotic G2/M phase transition" EXACT [PomBase:mah]
synonym: "delayed mitotic G2 phase progression" RELATED [PomBase:mah]
synonym: "DNA replication arrest" RELATED [PomBase:vw]
synonym: "DNA replication checkpoint activated" RELATED [PomBase:mah]
synonym: "G2/M transition DNA damage checkpoint activated" RELATED [PomBase:mah]
synonym: "increased duration of mitotic G2 phase" EXACT [PomBase:mah]
synonym: "increased duration of mitotic G2 phase during vegetative growth" EXACT [PomBase:mah]
synonym: "increased mitotic G2 duration" EXACT [PomBase:mah]
synonym: "mitotic cell cycle delay at G2/M transition" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in G2 phase: decreased rate" RELATED [SGD:phenotype_annotation]
synonym: "mitotic cell cycle progression in G2 phase: delayed" RELATED [SGD:phenotype_annotation]
synonym: "mitotic cell cycle progression in G2 phase: increased duration" EXACT [SGD:phenotype_annotation]
synonym: "mitotic G2 delay" RELATED [PomBase:mah]
synonym: "mitotic G2/M transition delay during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced rate of mitotic G2 phase progression" RELATED [PomBase:mah]
is_a: FYPO:0000403 ! increased duration of cell cycle progression through mitotic G2/M phase transition
is_a: FYPO:0000409 ! delayed cell cycle phase transition
is_a: FYPO:0000563 ! abnormal mitotic G2 phase progression
is_a: FYPO:0001069 ! increased duration of mitotic cell cycle phase
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000013
name: T-shaped cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a single cell grows in the form of the letter T." [PomBase:mah, PomBase:vw]
comment: A T-shaped cell may septate perpendicular to the normal septation axis, and divide to form normal-shaped daughter cells. Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'viable cell population' (FYPO:0002058) or one of its descendants.
synonym: "cell morphology, T shaped" EXACT [PomBase:mah]
synonym: "T-shaped cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
is_a: FYPO:0001491 ! viable vegetative cell
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000014
name: bottle-shaped cell
def: "A cell morphology phenotype in which the cell tapers at one end to a diameter smaller than the other." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "cell morphology, bottle/skittle" EXACT [PomBase:mah]
synonym: "skittle-shaped cell" EXACT [PomBase:mah]
is_a: FYPO:0001126 ! abnormal cell shape
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000015
name: branched cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a daughter cell grows from near, and at approximately a right angle to, the septum of the mother cell, resulting in the formation of a branched, septated cell. Cell division may give rise to branched or unbranched daughter cells." [PomBase:jh, PomBase:mah]
synonym: "branched cell during vegetative growth" EXACT [PomBase:mah]
synonym: "branched, septated cell" EXACT [PomBase:jh, PomBase:mah, PomBase:vw]
synonym: "cell morphology, branched" EXACT [PomBase:mah]
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
is_a: FYPO:0001126 ! abnormal cell shape
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000016
name: curved cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is curved along the long axis. In a curved cell, the long axis follows a smooth bend rather than a straight line." [PomBase:mah]
synonym: "bent cell" EXACT [PomBase:mah]
synonym: "cell morphology, curved" EXACT [PomBase:mah]
synonym: "comma-shaped cell" EXACT [PomBase:vw]
synonym: "curved cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000017
name: elongated cell
def: "A cell morphology phenotype in which cells are longer than normal, i.e. the maximum distance between the cell ends is greater than normal." [PomBase:mah, PomBase:vw]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "cell morphology, elongated cell" EXACT [PomBase:mah]
synonym: "long cell" EXACT [PomBase:vw]
is_a: FYPO:0001126 ! abnormal cell shape
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000020
name: pear-shaped cell
def: "A cell morphology phenotype in which a cell is shaped in the form of a pear." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "cell morphology, pear shaped" EXACT [PomBase:mah]
is_a: FYPO:0001126 ! abnormal cell shape
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000021
name: spheroid vegetative cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is shaped in the form of a spheroid. In spheroid cells, there is much less difference between the long and short axes of the cell than in wild type. Spheroid cells may shorter than normal, with approximately the same diameter as normal, or they may be enlarged." [PomBase:mah]
synonym: "cell morphology, round vegetative cell" RELATED [PomBase:mah]
synonym: "cell morphology, rounded vegetative cell" RELATED [PomBase:mah]
synonym: "spheroid cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
is_a: FYPO:0001955 ! spheroid cell
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000022
name: shmoo with long tip
def: "A cell morphology phenotype in which a cell forms a mating projection with a longer tip than normal." [PomBase:mah]
synonym: "cell morphology, shmoos with long tips" EXACT [PomBase:mah]
synonym: "conjugation tube with long tip" EXACT [PomBase:mah]
synonym: "mating projection with long tip" EXACT [PomBase:mah]
is_a: FYPO:0000357 ! abnormal shmoo morphology
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000023
name: small cell
def: "A cell morphology phenotype in which a cell has an abnormally low volume." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "cell size: decreased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001127 ! abnormal cell size
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000024
name: stubby cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which the cell diameter is larger than normal and the cell length is shorter than normal." [PomBase:mah]
synonym: "cell morphology, stubby cells" EXACT [PomBase:mah]
synonym: "stubby cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
is_a: FYPO:0001126 ! abnormal cell shape
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000025
name: swollen cell
def: "A cell morphology phenotype in which a cell has a larger volume than normal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "cell morphology, swollen cells" EXACT [PomBase:mah]
is_a: FYPO:0001127 ! abnormal cell size
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000026
name: abnormal cell polarity
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the establishment or maintenance of cell polarity is abnormal." [PomBase:mah]
synonym: "abnormal cell polarity during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal establishment or maintenance of cell polarity" EXACT [PomBase:mah]
synonym: "cell polarity defects" EXACT [PomBase:mah]
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000027
name: abnormal cell wall
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the cell wall is abnormal." [PomBase:mah]
synonym: "abnormal cell wall during vegetative growth" EXACT [PomBase:mah]
synonym: "cell wall defects" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000029
name: abnormal chromosome segregation
alt_id: FYPO:0000226
def: "A cellular process phenotype in which chromosome segregation is abnormal. Chromosome segregation begins with the alignment of chromosomes at the metaphase plate, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles." [GO:0007059, PomBase:mah]
synonym: "centromere function defective" RELATED [PomBase:mah]
synonym: "chromosome segregation defects" EXACT [PomBase:mah]
synonym: "chromosome segregation: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000030
name: abnormal mitotic chromosome congression
def: "A cellular process phenotype in which chromosome congression is abnormal during mitosis. Chromosome congression is the alignment of chromosomes at the metaphase plate, a plane halfway between the poles of the spindle." [GO:0051310, PomBase:mah]
synonym: "abnormal chromosome congression at mitotic metaphase plate" EXACT [PomBase:mah]
synonym: "abnormal chromosome congression during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal mitotic metaphase plate congression" EXACT [GO:0007080]
synonym: "chromosome segregation defects, chromosome congression" EXACT [PomBase:mah]
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
relationship: part_of FYPO:0000141 ! abnormal mitotic sister chromatid segregation
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000031
name: abnormal conjugation
def: "A cellular process phenotype in which conjugation is abnormal. Conjugation, also known as mating, is a process that results in the union of cellular and genetic information from cells of compatible mating types." [GO:0000747, PomBase:mah]
synonym: "abnormal conjugation with cellular fusion" EXACT [PomBase:mah]
synonym: "abnormal zygote formation" RELATED [PomBase:mah]
synonym: "conjugation defects" EXACT [PomBase:mah]
is_a: FYPO:0000301 ! mating phenotype
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000032
name: abnormal cytokinesis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cytokinesis is abnormal. Cytokinesis is part of the cell cycle and results in the division of the cytoplasm of a cell and its separation into two daughter cells." [GO:0033205, PomBase:mah]
synonym: "abnormal cell cycle cytokinesis" EXACT [PomBase:mah]
synonym: "abnormal cytokinesis during vegetative growth" EXACT [PomBase:mah]
synonym: "cytokinesis defects" EXACT [PomBase:mah]
synonym: "cytokinesis: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000033
name: abnormal contractile ring localization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which contractile ring localization is abnormal. Contractile ring localization is the part of cytokinesis in which contractile ring is assembled and/or maintained in a specific location." [GO:0032187, PomBase:mah]
comment: Note that the location of the contractile ring is determined by the location of the cell division site, so an abnormality in cell division site determination can be inferred from this phenotype.
synonym: "abnormal contractile ring localisation" EXACT [PomBase:mah]
synonym: "abnormal contractile ring localization during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal contractile ring localization involved in cell cycle cytokinesis" EXACT [PomBase:mah]
synonym: "cytokinesis defects, misplaced contractile ring" EXACT [PomBase:mah]
is_a: FYPO:0000032 ! abnormal cytokinesis
is_a: FYPO:0001337 ! localization phenotype during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000034
name: abnormal endocytosis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which endocytosis is abnormal. Endocytosis is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle." [GO:0006897, PomBase:mah]
synonym: "abnormal actin-mediated endocytosis" EXACT [PomBase:vw]
synonym: "abnormal endocytosis during vegetative growth" EXACT [PomBase:mah]
synonym: "endocytosis defects" EXACT [PomBase:mah]
synonym: "endocytosis: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000213 ! abnormal vesicle-mediated transport
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000035
name: growth auxotrophic for arginine
def: "Auxotrophy in which arginine is required for vegetative cell growth." [PomBase:mah]
synonym: "arginine auxotrophy" EXACT [PomBase:mah]
synonym: "growth auxotrophic for arginine during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000128 ! auxotrophy
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000036
name: growth auxotrophic for asparagine
def: "Auxotrophy in which asparagine is required for vegetative cell growth." [PomBase:mah]
synonym: "asparagine auxotrophy" EXACT [PomBase:mah]
synonym: "growth auxotrophic for asparagine during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000128 ! auxotrophy
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000037
name: growth auxotrophic for cysteine
def: "Auxotrophy in which cysteine is required for vegetative cell growth." [PomBase:mah]
synonym: "cysteine auxotrophy" EXACT [PomBase:mah]
synonym: "growth auxotrophic for cysteine during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000128 ! auxotrophy
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000038
name: growth auxotrophic for ethanolamine
def: "Auxotrophy in which ethanolamine is required for vegetative cell growth." [PomBase:mah]
synonym: "ethanolamine auxotrophy" EXACT [PomBase:mah]
synonym: "growth auxotrophic for ethanolamine during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000128 ! auxotrophy
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000039
name: growth auxotrophic for lysine
def: "Auxotrophy in which lysine is required for vegetative cell growth." [PomBase:mah]
synonym: "growth auxotrophic for lysine during vegetative growth" EXACT [PomBase:mah]
synonym: "lysine auxotrophy" EXACT [PomBase:mah]
is_a: FYPO:0000128 ! auxotrophy
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000040
name: growth auxotrophic for methionine
def: "Auxotrophy in which methionine is required for vegetative cell growth." [PomBase:mah]
synonym: "growth auxotrophic for methionine during vegetative growth" EXACT [PomBase:mah]
synonym: "methionine auxotrophy" EXACT [PomBase:mah]
is_a: FYPO:0000128 ! auxotrophy
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000041
name: growth auxotrophic for phenylalanine
def: "Auxotrophy in which phenylalanine is required for vegetative cell growth." [PomBase:mah]
synonym: "growth auxotrophic for phenylalanine during vegetative growth" EXACT [PomBase:mah]
synonym: "phenylalanine auxotrophy" EXACT [PomBase:mah]
is_a: FYPO:0000128 ! auxotrophy
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000042
name: growth auxotrophic for sulfite
def: "Auxotrophy in which sulfite is required for vegetative cell growth." [PomBase:mah]
synonym: "growth auxotrophic for sulfite during vegetative growth" EXACT [PomBase:mah]
synonym: "sulfite auxotrophy" EXACT [PomBase:mah]
is_a: FYPO:0000128 ! auxotrophy
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000043
name: abnormal glucan synthesis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which glucan biosynthesis is abnormal." [PomBase:mah]
synonym: "abnormal glucan biosynthetic process" EXACT [PomBase:mah]
synonym: "abnormal glucan synthesis during vegetative growth" EXACT [PomBase:mah]
synonym: "glucan synthesis defective" EXACT [PomBase:mah]
is_a: FYPO:0000860 ! abnormal metabolic process
is_a: FYPO:0001348 ! cellular metabolism phenotype during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000044
name: abnormal negative regulation of transcription by glucose
alt_id: FYPO:0000210
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of transcription by glucose (glucose repression) is abnormal. Specific genes that are normally not transcribed in the presence of glucose are transcribed in the mutant." [GO:0045014, PomBase:mah]
synonym: "abnormal glucose repression" EXACT [GO:0045014, PomBase:mah]
synonym: "abnormal glucose repression during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal negative regulation of transcription by glucose during vegetative growth" EXACT [PomBase:mah]
synonym: "glucose repression defects" EXACT [PomBase:mah]
is_a: FYPO:0000624 ! abnormal negative regulation of transcription
is_a: FYPO:0001484 ! abnormal cellular response to nutrient
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000045
name: abnormal cell population growth
def: "A cell population phenotype in which a population of cells grow abnormally." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "growth defect" RELATED [PomBase:mah]
is_a: FYPO:0000139 ! cell population growth phenotype
is_a: FYPO:0000300 ! biological process phenotype
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000046
name: decreased cell population growth
alt_id: FYPO:0000222
def: "A cell population phenotype in which cell population growth is decreased relative to normal. Decreased growth may reflect a reduced growth rate (i.e. slower growth), growth that occurs to a lesser extent than normal, or both." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "aerobic growth defects" RELATED [PomBase:mah]
synonym: "decreased aerobic cell population growth" NARROW [PomBase:mah]
synonym: "decreased growth" BROAD [PomBase:mah]
synonym: "reduced aerobic cell population growth" NARROW [PomBase:mah]
synonym: "reduced cell population growth" EXACT [PomBase:mah]
synonym: "slow aerobic cell population growth" NARROW [PomBase:mah]
is_a: FYPO:0000045 ! abnormal cell population growth
is_a: FYPO:0002058 ! viable cell population
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000047
name: normal cell population growth
def: "A cell population phenotype in which a population of cells grow normally." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "growth normal" BROAD [PomBase:mah]
is_a: FYPO:0000139 ! cell population growth phenotype
is_a: FYPO:0002058 ! viable cell population
relationship: has_part FYPO:0001419 ! normal cell population growth rate
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000048
name: invasive growth abolished
alt_id: FYPO:0000465
def: "A cellular process phenotype in which invasive growth does not occur." [PomBase:mah]
comment: This term was made obsolete because it is not required to describe fission yeast.
synonym: "absent invasive growth" EXACT [PomBase:mah]
synonym: "invasive growth abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "invasive growth: absent" EXACT [SGD:phenotype_annotation]
is_obsolete: true
consider: FYPO:0000551
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000049
name: inviable cell
def: "A viability phenotype in which a cell is unable to survive under conditions in which wild type cells survive." [PomBase:mah]
comment: Viability is usually determined under standard laboratory conditions, i.e. a cell is generally considered inviable if it cannot grow in rich medium under normal conditions such as temperature, pressure, oxygen level, pH, etc. Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants. This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "essential" RELATED [PomBase:mah]
synonym: "lethal" EXACT [PomBase:mah]
is_a: FYPO:0000004 ! cell viability
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000050
name: abnormal kinetochore structure
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the structure of the kinetochore is abnormal." [PomBase:mah]
comment: Note that an abnormal kinetochore organization process may, but does not necessarily, result in abnormal kinetochore structure.
synonym: "abnormal kinetochore structure during vegetative growth" EXACT [PomBase:mah]
synonym: "kinetochore defects" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
relationship: output_of FYPO:0000807 ! abnormal kinetochore organization
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000051
name: abnormal meiosis
alt_id: FYPO:0000738
def: "A cellular process phenotype in which meiosis is abnormal. Meiosis refers specifically to the nuclear division phase of a meiotic cell cycle." [PomBase:mah]
synonym: "meiosis defects" EXACT [PomBase:mah]
synonym: "meiosis: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000052 ! abnormal meiotic cell cycle progression
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000052
name: abnormal meiotic cell cycle progression
def: "A cellular process phenotype in which a cell does not proceed normally through a meiotic cell cycle." [PomBase:mah]
synonym: "meiotic cell cycle defects" EXACT [PomBase:mah]
is_a: FYPO:0000011 ! abnormal cell cycle progression
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000054
name: abnormal microtubule cytoskeleton organization
alt_id: FYPO:0000053
def: "A phenotype that affects the organization of the microtubule cytoskeleton. Microtubule cytoskeleton organization is a cellular process that results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins." [GO:0000226, PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Note that an abnormal microtubule cytoskeleton organization process may, but does not necessarily, result in abnormal microtubule cytoskeleton morphology.
subset: qc_do_not_manually_annotate
synonym: "abnormal microtubule cytoskeleton organisation" EXACT [PomBase:mah]
synonym: "abnormal microtubule organisation" RELATED [PomBase:mah]
synonym: "abnormal microtubule organization" RELATED [PomBase:mah]
synonym: "microtubule cytoskeleton defects" EXACT [PomBase:mah]
synonym: "microtubule organization defects" RELATED [PomBase:mah]
is_a: FYPO:0000297 ! microtubule cytoskeleton organization phenotype
is_a: FYPO:0000802 ! abnormal cytoskeleton organization
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000055
name: long microtubules
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which cells form microtubules that are longer than normal." [PomBase:mah]
synonym: "elongated microtubules" EXACT [PomBase:mah]
synonym: "long microtubules during vegetative growth" EXACT [PomBase:mah]
synonym: "microtubule organization defects, long microtubules" EXACT [PomBase:mah]
is_a: FYPO:0001418 ! abnormal microtubule cytoskeleton morphology
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000056
name: mitochondria fused
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which mitochondria have fused into fewer and larger structures than normal." [PomBase:mah]
synonym: "mitochondria fused during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000359 ! abnormal mitochondrial morphology
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000057
name: mitochondrial nucleoid enlarged
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the mitochondrial nucleoid is larger than normal." [PomBase:mah]
synonym: "mitochondrial nucleoid enlarged during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000058
name: mitochondrial nucleoid decreased number
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which a cell contains fewer mitochondrial nucleoids than normal." [PomBase:mah]
synonym: "mitochondrial nucleoid decreased number during vegetative growth" EXACT [PomBase:mah]
synonym: "mitochondrial nucleoid reduced number" EXACT [PomBase:mah]
synonym: "mitochondrial nucleoids present in decreased number" RELATED [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000059
name: abnormal mitotic cell cycle progression
def: "A cellular process phenotype in which a cell does not proceed normally through a mitotic cell cycle." [PomBase:mah]
synonym: "mitotic cell cycle defects" EXACT [PomBase:mah]
synonym: "mitotic cell cycle: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000011 ! abnormal cell cycle progression
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000060
name: mononucleate
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which a cell contains a single nucleus." [PomBase:mah]
synonym: "mononucleate during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000061
name: multinucleate
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which a cell contains more than one nucleus." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "multinucleate cells" EXACT [PomBase:al]
synonym: "multinucleate during vegetative growth" EXACT [PomBase:mah]
synonym: "multiple nuclei" EXACT [PomBase:al]
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000062
name: abnormal nuclear morphology
alt_id: FYPO:0000259
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of the nucleus is abnormal." [PomBase:mah]
comment: Note that an abnormal nucleus organization process may, but does not necessarily, result in abnormal nuclear morphology.
synonym: "abnormal nuclear morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "nuclear morphology defects" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
relationship: output_of FYPO:0000810 ! abnormal nucleus organization
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000063
name: abnormal DNA recombination
def: "A cellular process phenotype in which DNA recombination is abnormal. DNA recombination is a process that results in reassortment of genes, producing gene combinations different from those that were present in the parents." [GO:0006310, PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "recombination defects" EXACT [PomBase:mah]
is_a: FYPO:0000293 ! DNA metabolism phenotype
is_a: FYPO:0000860 ! abnormal metabolic process
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000064
name: resistance to 2-deoxyglucose
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of 2-deoxyglucose than normal." [PomBase:mah]
synonym: "resistance to 2-deoxyglucose during vegetative growth" EXACT [PomBase:mah]
synonym: "resistance to 2-DOG" EXACT [PomBase:mah]
synonym: "resistant to 2-deoxy-D-glucose" EXACT [CHEBI:15866, PomBase:mah]
synonym: "resistant to 2-DOG" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000065
name: resistance to 5-azacytidine
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of 5-azacytidine than normal." [PomBase:mah]
synonym: "resistance to 5-azacytidine during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to 5-azacytidine" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000066
name: resistance to L-azetidine-2-carboxylic acid
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of L-azetidine-2-carboxylic acid than normal." [PomBase:mah]
synonym: "resistance to (S)-azetidine-2-carboxylic acid" EXACT [CHEBI:6198, PomBase:mah]
synonym: "resistance to AZC" BROAD [PomBase:mah]
synonym: "resistance to L-azetidine-2-carboxylic acid during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to L-azetidine-2-carboxylic acid" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000067
name: resistance to brefeldin A
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of brefeldin A than normal." [PomBase:mah]
synonym: "resistance to BFA" EXACT [PomBase:mah]
synonym: "resistance to brefeldin A during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to Brefeldin A" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000068
name: resistance to K-252a
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of K-252a than normal." [PomBase:mah]
synonym: "resistance to K-252a during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to K-252a" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000069
name: resistance to thiabendazole
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of thiabendazole than normal." [PomBase:mah]
synonym: "resistance to TBZ" EXACT [PomBase:mah]
synonym: "resistance to thiabendazole during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to TBZ" EXACT [CHEBI:45979, PomBase:mah]
synonym: "resistant to thiabendazole" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical

[Term]
id: FYPO:0000070
name: resistance to amphotericin B
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of amphotericin B than normal." [PomBase:mah]
synonym: "resistance to amphotericin B during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to amphotericin" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000071
name: resistance to aureobasidin A
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of aureobasidin A than normal." [PomBase:mah]
synonym: "resistance to AbA" EXACT [PMID:9472078]
synonym: "resistance to aureobasidin A during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to aureobasidin A" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000072
name: resistance to benomyl
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of benomyl than normal." [PomBase:mah]
synonym: "resistance to benomyl during vegetative growth" EXACT [PomBase:mah]
synonym: "resistance to MBC" EXACT [PMID:6887244]
synonym: "resistance to methyl benzimidazole-2-yl-carbamate" EXACT [PMID:6887244]
synonym: "resistant to benomyl" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000073
name: resistance to caffeine
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of caffeine than normal." [PomBase:mah]
synonym: "resistance to caffeine during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to caffeine" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000074
name: resistance to drug
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of a drug than normal." [PomBase:mah]
synonym: "drug resistance" EXACT [PomBase:mah]
synonym: "drug resistant" EXACT [PomBase:mah]
synonym: "resistance to drug during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to drugs" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000075
name: resistance to lovastatin
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of lovastatin than normal." [PomBase:mah]
synonym: "resistance to lovastatin during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to lovastatin" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000076
name: resistance to nystatin
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of nystatin than normal." [PomBase:mah]
synonym: "resistance to nystatin during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to nystatin" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000077
name: resistance to rapamycin
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of rapamycin than normal." [PomBase:mah]
synonym: "resistance to rapamycin during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to rapamycin" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000078
name: abnormal cellular respiration
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cellular respiration is abnormal." [PomBase:mah]
synonym: "abnormal cellular respiration during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal respiration" BROAD [PomBase:mah]
synonym: "abnormal respiratory metabolism" EXACT [PomBase:mah]
synonym: "respiratory metabolism: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001363 ! abnormal metabolic process during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000079
name: sensitive to caspofungin
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to caspofungin. Cells stop growing (and may die) at a concentration of caspofungin that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to caspofungin" EXACT [PomBase:mah]
synonym: "sensitive to caspofungin during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to glucan synthase inhibitor" BROAD [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000080
name: sensitive to cold
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to cold; cells fail to grow or grow more slowly than normal at low temperatures." [PomBase:mah]
synonym: "cold sensitive" EXACT [PomBase:mah]
synonym: "cold sensitivity: increased" EXACT [SGD:phenotype_annotation]
synonym: "hypersensitive to cold" EXACT [PomBase:mah]
synonym: "sensitive to cold during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000304 ! sensitive to stress
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000081
name: sensitive to high osmolarity
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to conditions of high osmolarity." [PomBase:mah]
synonym: "hyperosmotic stress resistance: decreased" EXACT [SGD:phenotype_annotation]
synonym: "hypersensitive to high osmolarity" EXACT [PomBase:mah]
synonym: "sensitive to high osmolarity during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to hyperosmotic conditions" EXACT [PomBase:mah]
is_a: FYPO:0000270 ! sensitive to osmotic stress
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000082
name: sensitive to high temperature
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to heat. For example, cells may fail to grow or grow more slowly than normal at high temperatures." [PomBase:mah]
comment: For fission yeast, high temperature usually corresponds to above 32 degrees Celsius.
synonym: "heat sensitive" EXACT [PomBase:mah]
synonym: "heat sensitivity: increased" EXACT [SGD:phenotype_annotation]
synonym: "hypersensitive to high temperature" EXACT [PomBase:mah]
synonym: "sensitive to heat" EXACT [PomBase:mah]
synonym: "sensitive to high temperature during vegetative growth" EXACT [PomBase:mah]
synonym: "temperature sensitive" RELATED [PomBase:mah]
is_a: FYPO:0000212 ! abnormal cellular response to heat
is_a: FYPO:0000304 ! sensitive to stress
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000083
name: sensitive to enfumafungin
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to enfumafungin. Cells stop growing (and may die) at a concentration of enfumafungin that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to enfumafungin" EXACT [PomBase:mah]
synonym: "sensitive to enfumafungin during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to glucan synthase inhibitor" BROAD [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000084
name: sensitive to 6-azauracil
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to 6-azauracil. Cells stop growing (and may die) at a concentration of 6-azauracil that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to 6-azauracil" EXACT [PomBase:mah]
synonym: "sensitive to 6-azauracil during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000085
name: sensitive to camptothecin
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to camptothecin. Cells stop growing (and may die) at a concentration of camptothecin that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to camptothecin" EXACT [PomBase:mah]
synonym: "sensitive to camptothecin during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to CPT" EXACT [CHEBI:27656, PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000086
name: sensitive to tacrolimus
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to tacrolimus. Cells stop growing (and may die) at a concentration of tacrolimus that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to tacrolimus" EXACT [PomBase:mah]
synonym: "sensitive to FK506" EXACT [CHEBI:61057, PomBase:mah]
synonym: "sensitive to tacrolimus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000087
name: sensitive to hydrogen peroxide
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to hydrogen peroxide. Cells stop growing (and may die) at a concentration of hydrogen peroxide that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to hydrogen peroxide" EXACT [PomBase:mah]
synonym: "sensitive to H2O2" EXACT [PomBase:mah]
synonym: "sensitive to hydrogen peroxide during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000088
name: sensitive to hydroxyurea
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to hydroxyurea. Cells stop growing (and may die) at a concentration of hydroxyurea that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to hydroxyurea" EXACT [PomBase:mah]
synonym: "sensitive to HU" EXACT [PomBase:mah]
synonym: "sensitive to hydroxyurea during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000089
name: sensitive to methyl methanesulfonate
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to methyl methanesulfonate. Cells stop growing (and may die) at a concentration of methyl methanesulfonate that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to methyl methanesulfonate" EXACT [PomBase:mah]
synonym: "sensitive to methyl methanesulfonate during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to MMS" EXACT [CHEBI:25255, PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000090
name: sensitive to N-ethylmaleimide
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to N-ethylmaleimide. Cells stop growing (and may die) at a concentration of N-ethylmaleimide that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to N-ethylmaleimide" EXACT [PomBase:mah]
synonym: "sensitive to N-ethylmaleimide during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to NEM" EXACT [CHEBI:44485, PomBase:al]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000091
name: sensitive to thiabendazole
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to thiabendazole. Cells stop growing (and may die) at a concentration of thiabendazole that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to thiabendazole" EXACT [PomBase:mah]
synonym: "sensitive to TBZ" EXACT [CHEBI:45979, PomBase:mah]
synonym: "sensitive to thiabendazole during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000092
name: sensitive to amiodarone
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to amiodarone. Cells stop growing (and may die) at a concentration of amiodarone that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to amiodarone" EXACT [PomBase:mah]
synonym: "sensitive to amiodarone during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000093
name: sensitive to arsenic
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to arsenic. Cells stop growing (and may die) at a concentration of arsenic that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to arsenic" EXACT [PomBase:mah]
synonym: "sensitive to arsenic during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000094
name: sensitive to benomyl
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to benomyl. Cells stop growing (and may die) at a concentration of benomyl that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to benomyl" EXACT [PomBase:mah]
synonym: "sensitive to benomyl during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000095
name: sensitive to bleomycin
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to bleomycin. Cells stop growing (and may die) at a concentration of bleomycin that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to bleomycin" EXACT [PomBase:mah]
synonym: "sensitive to bleomycin during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000096
name: sensitive to cadmium
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to cadmium. Cells stop growing (and may die) at a concentration of cadmium that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to cadmium" EXACT [PomBase:mah]
synonym: "sensitive to cadmium during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000097
name: sensitive to caffeine
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to caffeine. Cells stop growing (and may die) at a concentration of caffeine that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to caffeine" EXACT [PomBase:mah]
synonym: "sensitive to caffeine during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000098
name: sensitive to calcium
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to calcium. Cells stop growing (and may die) at a concentration of calcium ions that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to calcium" EXACT [PomBase:mah]
synonym: "sensitive to calcium during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to calcium ions" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000099
name: sensitive to canavanine
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to canavanine. Cells stop growing (and may die) at a concentration of canavanine that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to canavanine" EXACT [PomBase:mah]
synonym: "sensitive to canavanine during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000100
name: sensitive to chloramphenicol
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to chloramphenicol. Cells stop growing (and may die) at a concentration of chloramphenicol that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to chloramphenicol" EXACT [PomBase:mah]
synonym: "sensitive to chloramphenicol during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000101
name: sensitive to chlorpropham
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to chlorpropham. Cells stop growing (and may die) at a concentration of chlorpropham that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to chlorpropham" EXACT [PomBase:mah]
synonym: "sensitive to chlorpropham during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to isopropyl N-3-chlorophenyl carbamate" EXACT [PomBase:mah]
synonym: "sensitive to spindle poison" BROAD [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000102
name: sensitive to cisplatin
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to cisplatin. Cells stop growing (and may die) at a concentration of cisplatin that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to cisplatin" EXACT [PomBase:mah]
synonym: "sensitive to cis-DDP" EXACT [CHEBI:27899]
synonym: "sensitive to cisplatin during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to DDP" BROAD [CHEBI:27899, PomBase:al]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000103
name: sensitive to copper
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to copper ions. Cells stop growing (and may die) at a concentration of copper ions that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to copper" EXACT [PomBase:mah]
synonym: "sensitive to copper during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to copper ions" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:53:56Z

[Term]
id: FYPO:0000104
name: sensitive to cycloheximide
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to cycloheximide. Cells stop growing (and may die) at a concentration of cycloheximide that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to cycloheximide" EXACT [PomBase:mah]
synonym: "sensitive to cycloheximide during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000105
name: sensitive to cyclosporin A
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to cyclosporin A. Cells stop growing (and may die) at a concentration of cyclosporin A that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to cyclosporin A" EXACT [PomBase:mah]
synonym: "sensitive to cyclosporin A during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to cyclosporine" EXACT [CHEBI:4031, PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000106
name: sensitive to hygromycin B
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to hygromycin B. Cells stop growing (and may die) at a concentration of hygromycin B that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to hygromycin B" EXACT [PomBase:mah]
synonym: "sensitive to hygromycin B during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000107
name: sensitive to latrunculin A
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to latrunculin A. Cells stop growing (and may die) at a concentration of latrunculin A that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to latrunculin A" EXACT [PomBase:mah]
synonym: "sensitive to latrunculin A during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000108
name: sensitive to menadione
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to menadione. Cells stop growing (and may die) at a concentration of menadione that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to menadione" EXACT [PomBase:mah]
synonym: "sensitive to menadione during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to vitamin K3" RELATED [PomBase:al]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000109
name: sensitive to papulacandin B
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to papulacandin B. Cells stop growing (and may die) at a concentration of papulacandin B that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to papulacandin B" EXACT [PomBase:mah]
synonym: "sensitive to papulacandin B during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000110
name: sensitive to pravastatin
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to pravastatin. Cells stop growing (and may die) at a concentration of pravastatin that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to pravastatin" EXACT [PomBase:mah]
synonym: "sensitive to pravastatin during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000111
name: sensitive to rapamycin
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to rapamycin. Cells stop growing (and may die) at a concentration of rapamycin that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to rapamycin" EXACT [PomBase:mah]
synonym: "sensitive to rapamycin during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000112
name: sensitive to sorbitol
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to sorbitol. Cells stop growing (and may die) at a concentration of sorbitol that allows wild type cells to grow." [PomBase:mah]
comment: Also consider annotating to 'sensitive to osmotic stress' (FYPO:0000270).
synonym: "hypersensitive to sorbitol" EXACT [PomBase:mah]
synonym: "sensitive to glucitol" EXACT [CHEBI:30911, PomBase:mah]
synonym: "sensitive to sorbitol during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000113
name: sensitive to staurosporine
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to staurosporine. Cells stop growing (and may die) at a concentration of staurosporine that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to staurosporine" EXACT [PomBase:mah]
synonym: "sensitive to staurosporine during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000114
name: cellular process phenotype
def: "A phenotype that affects a cellular process." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "fission yeast cellular process phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000002 ! cell phenotype
is_a: FYPO:0000300 ! biological process phenotype
created_by: midori
creation_date: 2011-04-12T12:00:38Z

[Term]
id: FYPO:0000115
name: sensitive to valproic acid
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to valproic acid. Cells stop growing (and may die) at a concentration of valproic acid that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to valproic acid" EXACT [PomBase:mah]
synonym: "sensitive to valproic acid during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000116
name: sensitive to zinc
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to zinc ions. Cells stop growing (and may die) at a concentration of zinc ions that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to zinc" EXACT [PomBase:mah]
synonym: "sensitive to zinc during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to zinc ions" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000117
name: abnormal septation
alt_id: FYPO:0000170
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which septation is abnormal." [PomBase:mah]
synonym: "abnormal barrier septum formation involved in cell cycle cytokinesis" EXACT [PomBase:mah]
synonym: "abnormal septation during vegetative growth" EXACT [PomBase:mah]
synonym: "septation defects" EXACT [PomBase:mah]
synonym: "septum formation: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000032 ! abnormal cytokinesis
is_a: FYPO:0001354 ! abnormal cellular component assembly during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000118
name: multiseptate
def: "A septation phenotype characterized by the presence of more than one septum in a cell." [PomBase:mah]
synonym: "multiseptate cells" EXACT [PomBase:al]
synonym: "multiseptate during vegetative growth" EXACT [PomBase:mah]
synonym: "septation defects, multiple septa" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
relationship: output_of FYPO:0000117 ! abnormal septation
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000119
name: abnormal spindle assembly
alt_id: FYPO:0000285
def: "A cellular process phenotype in which spindle assembly is abnormal. Spindle assembly is the aggregation, arrangement and bonding together of a set of components to form the spindle." [GO:0051225, PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
is_a: FYPO:0000054 ! abnormal microtubule cytoskeleton organization
is_a: FYPO:0000336 ! abnormal cellular component assembly
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000120
name: abnormal spindle
alt_id: FYPO:0000367
def: "A cellular structure phenotype in which the structure of the mitotic or meiotic spindle is abnormal." [PomBase:mah]
synonym: "abnormal spindle morphology" EXACT [PomBase:mah]
synonym: "spindle defects" EXACT [PomBase:mah]
synonym: "spindle morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000287 ! abnormal subcellular structure
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000121
name: abnormal sporulation
def: "A cellular process phenotype in which ascospore formation is abnormal." [PomBase:mah]
synonym: "abnormal ascospore formation" EXACT [PomBase:mah]
synonym: "sporulation defects" EXACT [PomBase:mah]
synonym: "sporulation: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000628 ! abnormal cellular process
is_a: FYPO:0000679 ! developmental process phenotype
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000122
name: abnormal telomere maintenance
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which telomere maintenance, i.e. any process that contributes to the maintenance of proper telomeric length and structure, is abnormal." [GO:0000723, PomBase:mah]
synonym: "abnormal telomere maintenance during vegetative growth" EXACT [PomBase:mah]
synonym: "telomere maintenance defects" EXACT [PomBase:mah]
is_a: FYPO:0000641 ! abnormal chromosome organization
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
is_a: FYPO:0001346 ! DNA metabolism phenotype during vegetative growth
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
is_a: FYPO:0001363 ! abnormal metabolic process during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000123
name: large vacuoles
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which vacuoles are larger than normal." [PomBase:mah]
synonym: "large vacuoles during vegetative growth" EXACT [PomBase:mah]
synonym: "vacuole organization defects, large vacuoles" EXACT [PomBase:mah]
is_a: FYPO:0000368 ! abnormal vacuolar morphology
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000124
name: viable cell
def: "A viability phenotype in which a cell is able to survive under the specified conditions." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
is_a: FYPO:0000004 ! cell viability
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000125
name: resistance to amiloride
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of amiloride than normal." [PomBase:mah]
synonym: "resistance to amiloride during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to amiloride" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000126
name: increased resistance to chemical
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased resistance to a chemical stimulus. Resistance to a chemical is usually measured by determining the maximum concentration of the chemical at which a population of cells grow and divide." [PomBase:mah]
synonym: "increased resistance to chemical during vegetative growth" EXACT [PomBase:mah]
synonym: "resistance to chemicals: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001358 ! vegetative cell population growth phenotype
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000127
name: increased sensitivity to chemical
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show decreased resistance to a chemical stimulus. Resistance to a chemical is measured by determining the maximum concentration of the chemical at which a population of cells grow and divide. Typically, cells are deemed sensitive to a chemical if they stop growing (and may die) at a concentration of the chemical that allows wild type cells to grow." [PomBase:mah]
synonym: "increased sensitivity to chemical during vegetative growth" EXACT [PomBase:mah]
synonym: "resistance to chemicals: decreased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001358 ! vegetative cell population growth phenotype
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000128
name: auxotrophy
def: "A phenotype characterized by a cell's inability to synthesize a particular organic compound required for its growth." [PATO:0000422, PomBase:mah]
synonym: "auxotrophy during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001348 ! cellular metabolism phenotype during vegetative growth
is_a: FYPO:0001358 ! vegetative cell population growth phenotype
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000129
name: spherical vegetative cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is formed in the shape of a sphere." [PomBase:mah]
synonym: "orb during vegetative growth" EXACT [PomBase:jh, PomBase:vw]
synonym: "spherical cells during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000021 ! spheroid vegetative cell
is_a: FYPO:0001956 ! spherical cell
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000130
name: short spindle
def: "A spindle phenotype in which the spindle is shorter than normal." [PomBase:mah]
synonym: "short spindles" EXACT [PomBase:mah]
synonym: "spindle defects, short spindles" EXACT [PomBase:mah]
is_a: FYPO:0000120 ! abnormal spindle
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000131
name: abnormal mitotic spindle elongation
def: "A spindle phenotype in which mitotic spindle elongation, i.e. the process of lengthening the distance between poles of the mitotic spindle, is abnormal." [GO:0000022, PomBase:mah]
synonym: "abnormal mitotic spindle elongation during vegetative growth" EXACT [PomBase:mah]
synonym: "spindle elongation defects" EXACT [PomBase:mah]
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
relationship: part_of FYPO:0000337 ! abnormal mitosis
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000132
name: abnormal septum disassembly
def: "A cellular process phenotype characterized by abnormal primary cell septum disassembly; may result in the formation of chains of attached cells." [PomBase:mah]
synonym: "abnormal septum disassembly during vegetative growth" EXACT [PomBase:mah]
synonym: "chained cells" RELATED [PomBase:mah]
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000133
name: elongated multinucleate cell
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell contains more than one nucleus and is elongated." [PomBase:mah]
synonym: "elongated multinucleate cell during vegetative growth" EXACT [PomBase:mah]
synonym: "long multinucleate cell" EXACT [PomBase:vw]
is_a: FYPO:0000061 ! multinucleate
is_a: FYPO:0001122 ! elongated vegetative cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000061 ! multinucleate
relationship: output_of FYPO:0000032 ! abnormal cytokinesis
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000134
name: branched, elongated, multiseptate cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell forms one or more branches near a septum, is elongated, and has more than one septum." [PomBase:mah]
synonym: "branched, elongated, multiseptate cell during vegetative growth" EXACT [PomBase:mah]
synonym: "branched, long, multiseptate cell" EXACT [PomBase:vw]
is_a: FYPO:0000223 ! elongated multiseptate cells
is_a: FYPO:0001512 ! branched, elongated cell
relationship: has_part FYPO:0000015 ! branched cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000118 ! multiseptate
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000135
name: abnormal plasma membrane sterol distribution
def: "A localization phenotype observed in the vegetative growth phase of the life cycle in which the distribution of sterols in the plasma membrane is abnormal." [PomBase:mah]
synonym: "abnormal plasma membrane sterol distribution during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal regulation of plasma membrane sterol distribution" EXACT [PomBase:mah]
synonym: "localization defects, sterol distribution defects" EXACT [PomBase:mah]
is_a: FYPO:0000813 ! abnormal plasma membrane organization
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
is_a: FYPO:0001337 ! localization phenotype during vegetative growth
created_by: midori
creation_date: 2011-03-29T05:54:40Z

[Term]
id: FYPO:0000136
name: cellular structure phenotype
def: "A phenotype that affects the structure of a cell or a cellular component." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast cellular structure phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000002 ! cell phenotype
created_by: midori
creation_date: 2011-04-12T12:01:21Z

[Term]
id: FYPO:0000137
name: cell cycle checkpoint phenotype
def: "A cell phenotype that affects any cell cycle checkpoint." [PomBase:mah]
synonym: "fission yeast cell cycle checkpoint phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000631 ! cell cycle phenotype
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
created_by: midori
creation_date: 2011-04-12T12:55:38Z

[Term]
id: FYPO:0000138
name: localization phenotype
def: "A cell phenotype that affects the localization of a structure or substance in a cell." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast localization phenotype" EXACT [PomBase:mah]
synonym: "localisation phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000114 ! cellular process phenotype
created_by: midori
creation_date: 2011-04-12T02:16:04Z

[Term]
id: FYPO:0000139
name: cell population growth phenotype
def: "A cell phenotype that affects the rate or extent of cell population growth." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast cell population growth phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000003 ! cell population phenotype
created_by: midori
creation_date: 2011-04-12T02:22:51Z

[Term]
id: FYPO:0000140
name: cellular metabolism phenotype
def: "A cellular process phenotype that affects metabolism in the cell." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast cellular metabolism phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000114 ! cellular process phenotype
created_by: midori
creation_date: 2011-04-12T02:23:26Z

[Term]
id: FYPO:0000141
name: abnormal mitotic sister chromatid segregation
alt_id: FYPO:0001359
def: "A cellular process phenotype in which mitotic sister chromatid segregation is abnormal. Mitotic sister chromatid segregation is the entire process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle." [GO:0000070, PomBase:mah]
synonym: "abnormal chromosome segregation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal mitotic chromosome segregation" EXACT [PomBase:mah]
synonym: "abnormal mitotic sister chromatid segregation during vegetative growth" EXACT [PomBase:mah]
synonym: "centromere function defective during vegetative growth" RELATED [PomBase:mah]
synonym: "chromosome segregation defects during vegetative growth" EXACT [PomBase:mah]
synonym: "chromosome segregation defects, mitotic" EXACT [PomBase:mah]
is_a: FYPO:0000029 ! abnormal chromosome segregation
is_a: FYPO:0000641 ! abnormal chromosome organization
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
relationship: part_of FYPO:0000337 ! abnormal mitosis
created_by: midori
creation_date: 2011-04-12T05:41:15Z

[Term]
id: FYPO:0000142
name: gene expression phenotype
def: "A cellular process phenotype that affects gene expression. Gene expression includes transcription, RNA processing, and, for protein-coding genes, translation and protein maturation." [GO:0010467, PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast gene expression phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000114 ! cellular process phenotype
created_by: midori
creation_date: 2011-04-12T05:46:51Z

[Term]
id: FYPO:0000143
name: transcription regulation phenotype
def: "A gene expression phenotype that affects the regulation of DNA-dependent transcription." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast transcription regulation phenotype" EXACT [PomBase:mah]
synonym: "gene-specific transcription regulation phenotype" RELATED [GO:0006355, PomBase:mah]
synonym: "transcriptional control phenotype" BROAD [GO:0006355, PomBase:mah]
is_a: FYPO:0000288 ! gene expression regulation phenotype
created_by: midori
creation_date: 2011-04-12T05:47:38Z

[Term]
id: FYPO:0000144
name: abnormal chromatin silencing
def: "A transcription regulation phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing is abnormal. Chromatin silencing is repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into heterochromatin." [GO:0006342, PomBase:mah]
synonym: "abnormal chromatin silencing during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000574 ! abnormal gene silencing
is_a: FYPO:0000624 ! abnormal negative regulation of transcription
created_by: midori
creation_date: 2011-04-12T05:48:37Z

[Term]
id: FYPO:0000145
name: regulation phenotype
def: "A cellular process phenotype that affects the regulation of a molecular function, biological process, or biological quality." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast regulation phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000114 ! cellular process phenotype
created_by: midori
creation_date: 2011-04-12T06:00:44Z

[Term]
id: FYPO:0000146
name: abnormal chromatin silencing at centromere
def: "A transcription regulation phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at centromeric regions is abnormal." [PomBase:mah]
synonym: "abnormal chromatin silencing at centromere during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000144 ! abnormal chromatin silencing
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000147
name: abnormal activation of bipolar cell growth
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which activation of bipolar cell growth is abnormal; results in abnormal new end take-off." [PomBase:mah]
synonym: "abnormal activation of bipolar vegetative cell growth" EXACT [PomBase:mah]
synonym: "abnormal NETO" EXACT [PomBase:mah]
synonym: "abnormal new end take off" EXACT [PomBase:mah]
is_a: FYPO:0000191 ! abnormal regulation of establishment or maintenance of cell polarity
is_a: FYPO:0001392 ! abnormal regulation of cell growth
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000148
name: abnormal regulation of mitotic cell cycle
def: "A regulation phenotype in which regulation of the mitotic cell cycle is abnormal." [PomBase:mah]
is_a: FYPO:0000011 ! abnormal cell cycle progression
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000149
name: transport phenotype
def: "A cell process phenotype that affects a transport process." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast transport phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000138 ! localization phenotype
created_by: midori
creation_date: 2011-04-14T05:43:20Z

[Term]
id: FYPO:0000150
name: abnormal colony morphology
def: "A cell population phenotype in which the morphology of a colony growing on a solid surface is abnormal." [PomBase:mah]
synonym: "colony shape: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000003 ! cell population phenotype
is_a: FYPO:0001985 ! abnormal phenotype
created_by: midori
creation_date: 2011-04-19T02:50:53Z

[Term]
id: FYPO:0000151
name: abnormal meiotic chromosome segregation
def: "A cellular process phenotype in which meiotic chromosome segregation is abnormal. Meiotic chromosome segregation is the entire process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets during M phase of the meiotic cell cycle." [GO:0045132, PomBase:mah]
is_a: FYPO:0000029 ! abnormal chromosome segregation
is_a: FYPO:0000051 ! abnormal meiosis
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000152
name: abnormal cellular response to nitrogen starvation
def: "A stress response phenotype in which the response to nitrogen starvation is abnormal." [PomBase:mah]
is_a: FYPO:0000713 ! abnormal cellular response to starvation
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000153
name: clumped cells
def: "A colony morphology phenotype in which cells form clumps due to incomplete hydrolysis of septum edging material; cells remain attached via remnants of the septum edging." [PMID:15194814, PomBase:mah]
is_a: FYPO:0000150 ! abnormal colony morphology
created_by: midori
creation_date: 2011-04-19T02:50:53Z

[Term]
id: FYPO:0000154
name: abnormal negative regulation of G0 to G1 transition
def: "A regulation phenotype in which negative regulation of the G0 to G1 transition is abnormal." [PomBase:mah]
synonym: "abnormal maintenance of cell cycle quiescence" EXACT [PomBase:mah]
synonym: "abnormal maintenance of cell quiescence" EXACT [PomBase:mah]
synonym: "abnormal maintenance of G0 arrest" EXACT [PomBase:mah]
synonym: "abnormal maintenance of G0 phase" EXACT [PomBase:mah]
is_a: FYPO:0000145 ! regulation phenotype
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000155
name: flocculating cells
alt_id: FYPO:0000462
def: "A cell population phenotype that reflects increased occurrence of flocculation. Flocculation is the non-sexual aggregation of single cells." [GO:0000128, PomBase:mah]
synonym: "flocculation: increased" EXACT [SGD:phenotype_annotation]
synonym: "increased cell-cell adhesion" BROAD [PomBase:mah, PomBase:vw]
synonym: "increased flocculation" EXACT [PomBase:mah]
is_a: FYPO:0000003 ! cell population phenotype
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-04-19T02:50:53Z

[Term]
id: FYPO:0000156
name: abnormal chromatin silencing at silent mating-type cassette
def: "A transcription regulation phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at the silent mating-type cassettes is abnormal." [PomBase:mah]
synonym: "abnormal chromatin silencing at silent mating-type cassette during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000144 ! abnormal chromatin silencing
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000157
name: abnormal response to DNA damage stimulus
def: "A stress response phenotype observed in the vegetative growth phase of the life cycle in which the response to DNA damage is abnormal." [PomBase:mah]
comment: Also consider specific phenotype terms for sensitivity to substances or other stimuli that can damage DNA, e.g. 'sensitive to DNA damaging agents' (FYPO:0000266), 'sensitive to methyl methanesulfonate' (FYPO:0000089), 'sensitive to UV' (FYPO:0000268), etc.
synonym: "abnormal response to DNA damage stimulus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001341 ! abnormal cellular response to stress during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000158
name: DNA content increased
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the total amount of DNA in a cell is greater than normal." [PomBase:mah]
synonym: "DNA content increased during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000159
name: abnormal chromosome condensation
alt_id: FYPO:0000028
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromosome condensation is abnormal. Chromosome condensation is the progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division." [GO:0030261, PomBase:mah]
synonym: "abnormal chromosome condensation during vegetative growth" EXACT [PomBase:mah]
synonym: "chromosome condensation defects" EXACT [PomBase:mah]
is_a: FYPO:0000641 ! abnormal chromosome organization
is_a: FYPO:0001346 ! DNA metabolism phenotype during vegetative growth
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
is_a: FYPO:0001363 ! abnormal metabolic process during vegetative growth
created_by: midori
creation_date: 2011-04-14T10:44:38Z

[Term]
id: FYPO:0000160
name: DNA fragmentation
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which DNA is broken into small fragments." [PomBase:mah]
synonym: "DNA fragmentation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000161
name: abnormal actomyosin contractile ring assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which contractile ring assembly is abnormal." [PomBase:mah]
synonym: "abnormal actomyosin contractile ring assembly during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal actomyosin contractile ring formation" RELATED [GO:0000915, PomBase:mah]
synonym: "abnormal contractile ring assembly" EXACT [PomBase:mah]
synonym: "abnormal cytokinesis, actomyosin contractile ring assembly" EXACT [PomBase:mah]
synonym: "abnormal cytokinetic ring assembly" NARROW [PomBase:vw]
synonym: "abnormal cytokinetic ring formation" RELATED [PomBase:vw]
is_a: FYPO:0000032 ! abnormal cytokinesis
is_a: FYPO:0000801 ! abnormal actin cytoskeleton organization
is_a: FYPO:0001354 ! abnormal cellular component assembly during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000162
name: abnormal cellular response to stress
def: "A cellular response phenotype in which a cellular response to stress is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
is_a: FYPO:0000298 ! cellular response phenotype
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000163
name: abnormal autophagy
alt_id: FYPO:0000379
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which autophagy is abnormal. Autophagy is the process in which cells digest parts of their own cytoplasm." [GO:0006914, PomBase:mah]
synonym: "abnormal autophagy during vegetative growth" EXACT [PomBase:mah]
synonym: "autophagy: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001363 ! abnormal metabolic process during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000164
name: abnormal cytokinetic cell separation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cytokinetic cell separation is abnormal. Cell separation is the process of physically separating progeny cells during cytokinesis, and involves enzymatic digestion of septum components." [GO:0000920, PomBase:mah]
synonym: "abnormal cytokinetic cell separation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000032 ! abnormal cytokinesis
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000165
name: abnormal regulation of conjugation
def: "A regulation phenotype in which regulation of conjugation is abnormal." [PomBase:mah]
synonym: "abnormal regulation of conjugation with cellular fusion" EXACT [PomBase:mah]
is_a: FYPO:0000145 ! regulation phenotype
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000166
name: abnormal regulation of G2/M transition of mitotic cell cycle
def: "A regulation phenotype in which negative regulation of the G2 to M transition of the mitotic cell cycle is abnormal." [PomBase:mah]
is_a: FYPO:0000148 ! abnormal regulation of mitotic cell cycle
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000167
name: increased DNA recombination at mitotic DNA replication fork barriers
def: "A cellular process phenotype in which the frequency of DNA recombination at replication fork barriers is increased." [PomBase:mah]
synonym: "DNA recombination defect, at mitotic DNA replication fork barriers, elevated" EXACT [PomBase:mah]
synonym: "increased DNA recombination at mitotic DNA replication fork barriers during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001345 ! abnormal DNA recombination during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000168
name: abnormal mitotic cell cycle spindle assembly checkpoint
def: "A cell cycle checkpoint phenotype in which the spindle assembly checkpoint of a mitotic cell cycle is abnormal. The mitotic spindle assembly checkpoint normally delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. In a mutant, the checkpoint may fail to activate under appropriate conditions, or may occur to a greater or lesser extent than wild type under any specified set of conditions." [GO:0007094, PomBase:mah]
synonym: "abnormal mitotic cell cycle spindle assembly checkpoint activation" EXACT [PomBase:mah]
is_a: FYPO:0000200 ! abnormal regulation of mitotic metaphase/anaphase transition
is_a: FYPO:0001704 ! abnormal cell cycle checkpoint
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000169
name: abnormal chromatin silencing at telomere
def: "A transcription regulation phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at telomeric regions is abnormal." [PomBase:mah]
synonym: "abnormal chromatin silencing at telomere during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000144 ! abnormal chromatin silencing
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000171
name: abnormal late endosome to vacuole transport
def: "A transport phenotype observed in the vegetative growth phase of the life cycle in which late endosome to vacuole transport is abnormal." [PomBase:mah]
synonym: "abnormal late endosome to vacuole transport during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000213 ! abnormal vesicle-mediated transport
is_a: FYPO:0000597 ! abnormal vacuolar transport
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000172
name: abnormal meiotic telomere clustering
def: "A meiosis phenotype in which meiotic telomere clustering is abnormal. Meiotic telomere clustering is the dynamic reorganization of telomeres in early meiotic prophase, during which meiotic chromosome ends are gathered in a bouquet arrangement at the inner surface of the nuclear envelope proximal to the spindle pole body." [GO:0045141, PomBase:mah]
is_a: FYPO:0000051 ! abnormal meiosis
is_a: FYPO:0000138 ! localization phenotype
is_a: FYPO:0000641 ! abnormal chromosome organization
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000173
name: abnormal mitotic cell cycle DNA replication checkpoint
alt_id: FYPO:0000823
def: "A cell cycle checkpoint phenotype in which the DNA replication checkpoint in a mitotic cell cycle is abnormal. The DNA replication checkpoint normally prevents the initiation of mitosis until DNA replication is complete. In a mutant, the checkpoint may fail to activate under appropriate conditions, or may occur to a greater or lesser extent than wild type under any specified set of conditions." [PomBase:mah]
synonym: "abnormal DNA replication checkpoint" BROAD [PomBase:mah]
synonym: "abnormal mitotic cell cycle DNA replication checkpoint activation" EXACT [PomBase:mah]
is_a: FYPO:0000166 ! abnormal regulation of G2/M transition of mitotic cell cycle
is_a: FYPO:0000643 ! abnormal DNA integrity checkpoint
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000174
name: abnormal cell wall biogenesis
def: "A cellular process phenotype in which cell wall biogenesis is abnormal." [PomBase:mah]
synonym: "abnormal fungal-type cell wall biogenesis" EXACT [PomBase:mah]
is_a: FYPO:0000628 ! abnormal cellular process
relationship: results_in_formation_of FYPO:0000027 ! abnormal cell wall
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000175
name: abnormal ascospore wall assembly
def: "A sporulation phenotype in which ascospore wall assembly is abnormal." [PomBase:mah]
synonym: "abnormal spore wall formation" RELATED [PomBase:mah]
synonym: "spore wall formation: abnormal" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0000336 ! abnormal cellular component assembly
is_a: FYPO:0000679 ! developmental process phenotype
relationship: part_of FYPO:0000121 ! abnormal sporulation
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000176
name: abnormal DNA replication initiation
def: "A cellular process phenotype in which the initiation of DNA replication is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "abnormal DNA-dependent DNA replication initiation" EXACT [PomBase:mah]
is_a: FYPO:0000217 ! abnormal DNA replication
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000177
name: abnormal mitotic spindle assembly
def: "A cellular process phenotype in which assembly of the mitotic spindle is abnormal." [PomBase:mah]
synonym: "abnormal mitotic spindle assembly during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001349 ! abnormal spindle assembly during vegetative growth
relationship: part_of FYPO:0000337 ! abnormal mitosis
relationship: results_in_formation_of FYPO:0000338 ! abnormal mitotic spindle
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000178
name: abnormal regulation of cytokinesis
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which regulation of cytokinesis is abnormal." [PomBase:mah]
synonym: "abnormal regulation of cell cycle cytokinesis" EXACT [PomBase:mah]
synonym: "abnormal regulation of cytokinesis during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000179
name: abnormal protein targeting via the multivesicular body sorting pathway
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein targeting to the vacuole via the multivesicular sorting pathway, leading to ubiquitin-dependent protein degradation, is abnormal." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" EXACT [PomBase:mah]
synonym: "abnormal protein targeting via the multivesicular body sorting pathway during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000171 ! abnormal late endosome to vacuole transport
is_a: FYPO:0000676 ! abnormal protein targeting to vacuole
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000180
name: abnormal cellular response to oxidative stress
def: "A stress response phenotype in which a cellular response to oxidative stress is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
is_a: FYPO:0000162 ! abnormal cellular response to stress
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000181
name: abolished crossover
def: "A DNA recombination phenotype observed in the vegetative growth phase of the life cycle in which reciprocal DNA recombination does not occur." [PomBase:mah]
synonym: "crossover abolished" EXACT [PomBase:mah]
synonym: "crossover abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "DNA recombination defects, crossover, abolished" EXACT [PomBase:mah]
is_a: FYPO:0001345 ! abnormal DNA recombination during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000182
name: abnormal cell wall organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell wall organization is abnormal. Cell wall organization results in the assembly, arrangement of constituent parts, or disassembly of the fungal-type cell wall." [GO:0031505, PomBase:mah]
synonym: "abnormal cell wall organisation" EXACT [PomBase:mah]
synonym: "abnormal cell wall organization during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal fungal-type cell wall organization" EXACT [PomBase:mah]
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000183
name: abnormal poly(A)+ mRNA export from nucleus
def: "A transport phenotype observed in the vegetative growth phase of the life cycle in which the export of polyadenylated mRNA from the nucleus is abnormal." [PomBase:mah]
synonym: "abnormal poly(A)+ mRNA export from nucleus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000204 ! abnormal mRNA export from nucleus
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000184
name: abnormal regulation of pseudohyphal growth
def: "A regulation phenotype in which regulation of pseudohyphal growth is abnormal." [PomBase:mah]
synonym: "abnormal regulation of filamentous growth" BROAD [PomBase:mah]
is_a: FYPO:0000145 ! regulation phenotype
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-04-13T03:34:54Z

[Term]
id: FYPO:0000185
name: decreased gene conversion
def: "A DNA recombination phenotype observed in the vegetative growth phase of the life cycle in which gene conversion occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased gene conversion during vegetative growth" EXACT [PomBase:mah]
synonym: "DNA recombination defects, gene conversion, reduced" EXACT [PomBase:mah]
synonym: "reduced gene conversion" EXACT [PomBase:mah]
is_a: FYPO:0001345 ! abnormal DNA recombination during vegetative growth
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000186
name: abnormal cell division
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell division is abnormal." [PomBase:mah]
synonym: "abnormal cell division during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000187
name: abnormal chromatin silencing by small RNA
def: "A transcription regulation phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing mediated by small RNA is abnormal." [PomBase:mah]
synonym: "abnormal chromatin silencing by small RNA during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000144 ! abnormal chromatin silencing
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000188
name: abnormal DNA repair
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which DNA repair is abnormal." [PomBase:mah]
synonym: "abnormal DNA repair during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000157 ! abnormal response to DNA damage stimulus
is_a: FYPO:0001346 ! DNA metabolism phenotype during vegetative growth
is_a: FYPO:0001363 ! abnormal metabolic process during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000189
name: abnormal nuclear mRNA splicing, via spliceosome
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mRNA splicing via the spliceosome is abnormal." [PomBase:mah]
synonym: "abnormal nuclear mRNA splicing, via spliceosome during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001553 ! abnormal RNA processing
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000190
name: abnormal actin cortical patch localization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch localization is abnormal." [PomBase:mah]
synonym: "abnormal actin cortical patch localisation" EXACT [PomBase:mah]
synonym: "abnormal actin cortical patch localization during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal actin patch localization" EXACT [PomBase:vw]
is_a: FYPO:0000801 ! abnormal actin cytoskeleton organization
is_a: FYPO:0001337 ! localization phenotype during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000191
name: abnormal regulation of establishment or maintenance of cell polarity
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which regulation of the establishment or maintenance of cell polarity is abnormal." [PomBase:mah]
synonym: "abnormal regulation of establishment or maintenance of cell polarity during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000192
name: abnormal regulation of S phase of mitotic cell cycle
def: "A regulation phenotype in which regulation of progression through S phase of the mitotic cell cycle is abnormal." [PomBase:mah]
comment: This term was made obsolete because it was based on a GO term (GO:0007090) that has itself been made obsolete.
is_obsolete: true
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000193
name: abnormal cellular response to osmotic stress
def: "A stress response phenotype observed in the vegetative growth phase of the life cycle in which a cellular response to osmotic stress is abnormal." [PomBase:mah]
synonym: "abnormal cellular response to osmotic stress during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001341 ! abnormal cellular response to stress during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000194
name: abnormal cellular response to hydrogen peroxide
def: "A stress response phenotype observed in the vegetative growth phase of the life cycle in which a cellular response to hydrogen peroxide is abnormal." [PomBase:mah]
synonym: "abnormal cellular response to hydrogen peroxide during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001340 ! abnormal cellular response to oxidative stress during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000196
name: abnormal forespore formation
def: "A sporulation phenotype in which prospore formation is abnormal." [PomBase:mah]
synonym: "abnormal ascospore-type prospore assembly" EXACT [GO:0031321]
synonym: "abnormal ascospore-type prospore formation" EXACT [PomBase:mah]
synonym: "abnormal prospore formation" EXACT [PomBase:mah]
is_a: FYPO:0000336 ! abnormal cellular component assembly
is_a: FYPO:0000679 ! developmental process phenotype
relationship: part_of FYPO:0000121 ! abnormal sporulation
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000197
name: abnormal horsetail movement
def: "A cellular process phenotype in which horsetail movement is abnormal. Horsetail movement is the oscillatory movement of the nucleus that takes place during meiotic prophase I." [GO:0030989, PomBase:mah]
synonym: "abnormal dynein-driven meiotic oscillatory nuclear movement" EXACT [GO:0030989, PomBase:mah]
synonym: "abnormal horsetail nuclear movement" EXACT [GO:0030989, PomBase:mah]
is_a: FYPO:0001720 ! abnormal transport
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000198
name: abnormal establishment or maintenance of actin cytoskeleton polarity
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the establishment or maintenance of actin cytoskeleton polarity is abnormal." [PomBase:mah]
synonym: "abnormal establishment or maintenance of actin cytoskeleton polarity during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000026 ! abnormal cell polarity
is_a: FYPO:0000801 ! abnormal actin cytoskeleton organization
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000199
name: increased long tract gene conversion
def: "A DNA recombination phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of long tract gene conversion is increased." [PomBase:mah]
synonym: "DNA recombination defects, long tract gene conversion, increased" EXACT [PomBase:mah]
synonym: "increased long tract gene conversion during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001345 ! abnormal DNA recombination during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000200
name: abnormal regulation of mitotic metaphase/anaphase transition
def: "A regulation phenotype in which regulation of the mitotic metaphase to anaphase transition is abnormal." [PomBase:mah]
synonym: "abnormal regulation of mitotic metaphase/anaphase transition during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000148 ! abnormal regulation of mitotic cell cycle
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000201
name: abnormal histone deacetylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone deacetylation is abnormal." [PomBase:mah]
synonym: "abnormal histone deacetylation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000330 ! abnormal histone modification
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000202
name: abnormal regulation of cytokinetic cell separation
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which regulation of cytokinetic cell separation is abnormal." [PomBase:mah]
synonym: "abnormal regulation of cytokinetic cell separation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000203
name: abnormal ergosterol biosynthetic process
def: "A metabolism phenotype observed in the vegetative growth phase of the life cycle in which ergosterol biosynthesis is abnormal." [PomBase:mah]
synonym: "abnormal ergosterol biosynthesis" EXACT [PomBase:mah]
synonym: "abnormal ergosterol biosynthetic process during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001363 ! abnormal metabolic process during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000204
name: abnormal mRNA export from nucleus
def: "A transport phenotype observed in the vegetative growth phase of the life cycle in which the export of mRNA from the nucleus is abnormal." [PomBase:mah]
synonym: "abnormal mRNA export from nucleus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000506 ! abnormal nuclear export
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000206
name: abnormal chromatin silencing at rDNA
def: "A transcription regulation phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at ribosomal DNA repeats is abnormal." [PomBase:mah]
synonym: "abnormal chromatin silencing at rDNA during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000144 ! abnormal chromatin silencing
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000207
name: abnormal cellular response to caffeine
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to caffeine is abnormal." [PomBase:mah]
synonym: "abnormal cellular response to caffeine during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001342 ! cellular response phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000208
name: abnormal cellular response to cadmium ion
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to cadmium ions is abnormal." [PomBase:mah]
synonym: "abnormal cellular response to cadmium ion during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001342 ! cellular response phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000209
name: abnormal attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the attachment of spindle microtubules to the kinetochore during the first meiotic division is abnormal." [PomBase:mah]
synonym: "abnormal attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000325 ! abnormal attachment of spindle microtubules to kinetochore
is_a: FYPO:0001350 ! abnormal microtubule cytoskeleton organization during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000211
name: abnormal cellular response to drug
def: "A chemical response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to a chemical is abnormal." [PomBase:mah]
synonym: "abnormal cellular response to drug during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001342 ! cellular response phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000212
name: abnormal cellular response to heat
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to heat is abnormal." [PomBase:mah]
synonym: "abnormal cellular response to heat during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001341 ! abnormal cellular response to stress during vegetative growth
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000213
name: abnormal vesicle-mediated transport
def: "A transport phenotype observed in the vegetative growth phase of the life cycle in which vesicle-mediated transport is abnormal." [PomBase:mah]
synonym: "abnormal vesicle-mediated transport during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001336 ! transport phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
is_a: FYPO:0001720 ! abnormal transport
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000214
name: abnormal mitotic chromosome condensation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic chromosome condensation is abnormal." [PomBase:mah]
synonym: "abnormal mitotic chromosome condensation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000159 ! abnormal chromosome condensation
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000215
name: abnormal intracellular protein transport
def: "A transport phenotype observed in the vegetative growth phase of the life cycle in which intracellular protein transport is abnormal." [PomBase:mah]
synonym: "abnormal intracellular protein transport during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000540 ! abnormal protein transport
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000216
name: abnormal negative regulation of DNA replication initiation
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of the initiation of DNA-dependent DNA replication is abnormal, resulting in re-replication of all or part of the genome." [PomBase:mah]
synonym: "abnormal negative regulation of DNA replication initiation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal negative regulation of DNA-dependent DNA replication initiation" EXACT [PomBase:mah]
synonym: "DNA re-replication" RELATED [PomBase:mah]
synonym: "DNA replication defects, endoreduplication" RELATED [PomBase:mah]
synonym: "DNA rereplication" RELATED [PomBase:mah]
is_a: FYPO:0001248 ! abnormal regulation of DNA replication initiation
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000217
name: abnormal DNA replication
def: "A cellular process phenotype in which DNA replication is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "abnormal DNA-dependent DNA replication" EXACT [PomBase:mah]
is_a: FYPO:0000293 ! DNA metabolism phenotype
is_a: FYPO:0000860 ! abnormal metabolic process
created_by: midori
creation_date: 2011-04-13T03:41:10Z

[Term]
id: FYPO:0000218
name: decreased Mre11 complex assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of Mre11 complex assembly is reduced." [PomBase:mah]
synonym: "decreased Mre11 complex assembly during vegetative growth" EXACT [PomBase:mah]
synonym: "MRN complex formation, reduced" EXACT [PomBase:mah]
is_a: FYPO:0000447 ! abnormal protein complex assembly
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000219
name: increased protein oxidation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of oxidation of one or more specific proteins, or of specific protein sites, is increased, resulting in the accumulation of proteins with oxidative modifications including carbonylated proteins." [PomBase:mah]
synonym: "accumulation of carbonylated proteins" RELATED [PomBase:mah]
synonym: "increased level of disulfides" RELATED [PomBase:al]
synonym: "increased level of oxidised thiols in proteins" RELATED [PomBase:al]
synonym: "increased level of oxidized protein thiols" RELATED [PomBase:mah]
synonym: "increased protein oxidation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000547 ! increased protein modification
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000220
name: accumulation of centromeric outer repeat transcripts
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which small interfering RNA transcripts derived from the centromere outer repeat region are present at greater levels than normal." [PMID:20211136, PomBase:mah]
synonym: "accumulation of centromeric outer repeat transcripts during vegetative growth" EXACT [PomBase:mah]
synonym: "accumulation of non-coding outer repeat transcripts" EXACT [PomBase:vw]
synonym: "accumulation of siRNAs homologous to outer repeats" EXACT [PomBase:vw]
synonym: "increased centromeric outer repeat transcript level" EXACT [PomBase:mah]
synonym: "increased level of centromeric outer repeat transcripts" EXACT [PomBase:mah]
synonym: "increased level of siRNAs homologous to outer repeats" EXACT [PomBase:vw]
is_a: FYPO:0000825 ! increased RNA level during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000221
name: transcription regulation phenotype, adaptive response to loss of mtDNA
def: "A transcription regulation phenotype observed in the vegetative growth phase of the life cycle in which the transcription of specific genes is regulated in response to the loss of mitochondrial DNA." [PMID:17868468, PomBase:mah]
synonym: "adaptive expression responses" EXACT [PomBase:mah]
synonym: "fission yeast transcription regulation phenotype, adaptive response to loss of mtDNA" EXACT [PomBase:mah]
synonym: "transcription regulation phenotype, adaptive response to loss of mtDNA during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001335 ! transcription regulation phenotype during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000223
name: elongated multiseptate cells
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which cells are elongated and have more than one septum per cell." [PomBase:mah]
synonym: "elongated multiseptate cells during vegetative growth" EXACT [PomBase:mah]
synonym: "long multiseptate cells" EXACT [PomBase:vw]
is_a: FYPO:0000118 ! multiseptate
is_a: FYPO:0001122 ! elongated vegetative cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000118 ! multiseptate
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000224
name: lemon-shaped
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a single cell grows in the form of a lemon. A lemon shape is defined mathematically as having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc." [http://mathworld.wolfram.com/Lemon.html, PomBase:mah]
synonym: "cell morphology, lemon shaped" EXACT [PomBase:mah]
synonym: "lemon-shaped during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
is_a: FYPO:0001126 ! abnormal cell shape
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000225
name: snowman-shaped spore
def: "A cell morphology phenotype in which a spore assumes a snowman shape, having two connected parts, roughly spherical, of different sizes." [PomBase:mah]
synonym: "cell morphology, snowman during sporulation" RELATED [PomBase:mah]
synonym: "snowman during sporulation" RELATED [PomBase:mah]
is_a: FYPO:0000348 ! abnormal spore morphology
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000227
name: chromosome loss during mitotic chromosome segregation
def: "A chromosome segregation phenotype observed in the vegetative growth phase of the life cycle in which one or more chromosome or minichromosome is not correctly segregated to either daughter cells during mitosis." [PMID:11809834, PMID:20211136, PomBase:mah]
synonym: "chromosome loss during mitotic sister chromatid segregation" EXACT [PomBase:mah]
synonym: "chromosome loss during segregation during vegetative growth" EXACT [PomBase:mah]
synonym: "chromosome segregation defects, chromosome loss" EXACT [PomBase:mah]
is_a: FYPO:0000141 ! abnormal mitotic sister chromatid segregation
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000228
name: lagging mitotic chromosomes
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which sister chromatids do not move towards the spindle poles at the same time during mitosis, but instead one or more chromosomes remain distant from the spindle pole after the bulk of the DNA has separated. Mitotic sister chromatid segregation stops before completing separation of chromosomes." [PMID:11809834, PMID:20211136, PomBase:mah]
synonym: "chromosome segregation defects, lagging mitotic chromosomes" EXACT [PomBase:mah]
synonym: "lagging chromosomes during vegetative growth" EXACT [PomBase:mah]
synonym: "lagging mitotic sister chromatids" EXACT [PomBase:mah]
is_a: FYPO:0001271 ! incomplete, unequal mitotic sister chromatid separation
is_a: FYPO:0002090 ! lagging chromosomes
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000229
name: cut
alt_id: FYPO:0000322
alt_id: FYPO:0000323
def: "An inviable phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal chromosome segregation, and gives rise to inviable daughter cells." [PomBase:jh, PomBase:mah, PomBase:vw]
comment: In a cut phenotype, the septum may partition the two nuclei into the two daughter cells, partition both nuclei into one daughter cell, or physically divide one nucleus, depending on septum placement. Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "cut during vegetative growth" EXACT [PomBase:mah]
synonym: "cut, binucleate cell formation" NARROW [PomBase:mah, PomBase:vw]
synonym: "cut, septum dividing nucleus" NARROW [PomBase:mah, PomBase:vw]
is_a: FYPO:0000141 ! abnormal mitotic sister chromatid segregation
is_a: FYPO:0001489 ! inviable vegetative cell
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000230
name: abnormal contractile ring actin filament organization
def: "A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which the assembly and distribution of actin filament bundles does not occur normally, resulting in the formation of an abnormal contractile ring in which actin is absent or mislocalized." [GO:2000689, PMID:19713940, PomBase:mah]
synonym: "abnormal contractile ring actin filament organisation" EXACT [PomBase:mah]
synonym: "abnormal contractile ring actin filament organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000032 ! abnormal cytokinesis
is_a: FYPO:0000727 ! abnormal actin filament organization
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000231
name: abnormal contractile ring myosin filament organization
def: "A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which myosin filaments are not localized normally within the contractile ring." [GO:2000708, PMID:19713940, PomBase:mah]
synonym: "abnormal contractile ring myosin filament organisation" EXACT [PomBase:mah]
synonym: "abnormal contractile ring myosin filament organization during vegetative growth" EXACT [PomBase:mah]
synonym: "cytokinesis defects, contractile ring myosin distribution, defective" RELATED [PomBase:mah]
is_a: FYPO:0000032 ! abnormal cytokinesis
is_a: FYPO:0000801 ! abnormal actin cytoskeleton organization
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000232
name: actomyosin contractile ring splitting
def: "A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which the contractile ring splits upon initiation of contraction during anaphase B, resulting in the formation of a primary ring that undergoes constriction and a secondary ring that does not constrict." [PMID:18272786, PomBase:mah]
synonym: "abnormal contractile ring contraction with contractile ring splitting" EXACT [PomBase:mah]
synonym: "actomyosin contractile ring splitting during vegetative growth" EXACT [PomBase:mah]
synonym: "actomyosin contractile ring splitting upon contraction" EXACT [PomBase:mah]
synonym: "cytokinesis defects, splitting of the actinomyosin ring" RELATED [PomBase:mah]
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
is_a: FYPO:0001364 ! abnormal contractile ring contraction
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000233
name: long cytoplasmic microtubules
def: "A microtubule organization phenotype observed in the vegetative growth phase of the life cycle in which cells form cytoplasmic microtubules that are longer than normal." [PomBase:mah]
synonym: "long cytoplasmic microtubules during vegetative growth" EXACT [PomBase:mah]
synonym: "microtubule organization defect, long cytoplasmic microtubules" EXACT [PomBase:mah]
synonym: "microtubule organization defects, long cytoplasmic microtubules" EXACT [PomBase:mah]
is_a: FYPO:0000055 ! long microtubules
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000234
name: abnormal interphase microtubule nucleation
def: "A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which nucleation of microtubules from interphase microtubule organizing centers (iMTOCs) is abnormal." [PMID:19001497, PomBase:mah]
synonym: "abnormal interphase microtubule nucleation by interphase microtubule organizing center" EXACT [PomBase:mah]
synonym: "abnormal interphase microtubule nucleation during vegetative growth" EXACT [PomBase:mah]
synonym: "cytoskeletal defects, cytoplasmic microtubule nucleation defects, Non-SPB" RELATED [PomBase:mah]
is_a: FYPO:0001350 ! abnormal microtubule cytoskeleton organization during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000235
name: abnormal regulation of translation in response to osmotic stress
def: "A gene expression phenotype observed in the vegetative growth phase of the life cycle in which regulation of translation in response to osmotic stress is abnormal. Translation may be down-regulated to a greater extent than normal, and may not be restored to normal levels post-stress." [PMID:18065650, PomBase:mah]
synonym: "abnormal regulation of translation in response to osmotic stress during vegetative growth" EXACT [PomBase:mah]
synonym: "defective in recovery of translation after hyperosmotic shock" RELATED [PomBase:mah]
is_a: FYPO:0001332 ! abnormal regulation of translation in response to stress during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000236
name: abnormal regulation of translation in response to oxidative stress
def: "A gene expression phenotype observed in the vegetative growth phase of the life cycle in which regulation of translation in response to oxidative stress is abnormal. Translation may be down-regulated to a greater extent than normal, and may not be restored to normal levels post-stress." [PMID:18065650, PomBase:mah]
synonym: "abnormal regulation of translation in response to oxidative stress during vegetative growth" EXACT [PomBase:mah]
synonym: "defective in recovery of translation after oxidative stress" RELATED [PomBase:mah]
is_a: FYPO:0001332 ! abnormal regulation of translation in response to stress during vegetative growth
is_a: FYPO:0001340 ! abnormal cellular response to oxidative stress during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000237
name: abnormal regulation of translation in response to nitrogen starvation
def: "A gene expression phenotype in which regulation of translation in response to nitrogen starvation is abnormal. Translation may be down-regulated to a greater extent than normal, and may not be restored to normal levels upon prolonged nitrogen starvation." [PMID:18065650, PomBase:mah]
synonym: "defective in recovery of translation during nitrogen starvation" RELATED [PomBase:mah]
is_a: FYPO:0000152 ! abnormal cellular response to nitrogen starvation
is_a: FYPO:0000263 ! abnormal regulation of translation in response to stress
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000238
name: inviable cell upon G0 to G1 transition
def: "A cell phenotype in which a cell fails to resume growth after several days in G0 phase. The inviable cells show some features characteristic of apoptosis, including loss of DNA." [PMID:19197239, PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "die in G0 with an apoptotic-like phenotype" EXACT [PomBase:mah]
synonym: "essential upon G0 to G1 transition" RELATED [PomBase:mah]
is_a: FYPO:0000049 ! inviable cell
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000239
name: expression of MBF target genes increased
def: "A gene expression phenotype observed in the vegetative growth phase of the life cycle in which transcription of genes that are regulated by MBF (the MluI cell cycle box factor) is increased." [PomBase:mah]
synonym: "expression of MBF target genes increased during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001333 ! gene expression regulation phenotype during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000240
name: abnormal filament morphology
def: "A cell population phenotype in which the morphology of invasively growing filaments is abnormal." [PomBase:mah]
synonym: "filament morphology aberrant" EXACT [PomBase:mah]
is_a: FYPO:0000003 ! cell population phenotype
is_a: FYPO:0001985 ! abnormal phenotype
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000241
name: genome stability defects
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which any process that affects the physical integrity, replication, or segregation of genomic DNA is abnormal. Encompasses effects on DNA metabolism, chromosome organization, the spindle assembly checkpoint, and any DNA integrity checkpoint." [PomBase:jh, PomBase:mah, PomBase:vw]
comment: Consider annotating to 'abnormal chromosome organization' (FYPO:0000641), 'DNA metabolism phenotype' (FYPO:0000293) or any of its children, 'abnormal mitotic cell cycle spindle assembly checkpoint' (FYPO:0000168), or 'abnormal DNA integrity checkpoint' (FYPO:0000643) or any of its children.
synonym: "genome stability defects during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000242
name: normal cell population growth on ammonia nitrogen source
def: "A vegetative cell population growth phenotype in which cells grow normally in a medium containing ammonia as the nitrogen source." [PomBase:mah]
synonym: "growth defect, normal growth with ammonia nitrogen source" RELATED [PomBase:mah]
synonym: "normal growth on ammonia nitrogen source" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on ammonia nitrogen source" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000243
name: normal cell population growth on proline nitrogen source
def: "A vegetative cell population growth phenotype in which cells grow normally in a medium containing L-proline as the nitrogen source." [PomBase:mah]
synonym: "growth defect, normal growth with proline nitrogen source" RELATED [PomBase:mah]
synonym: "normal growth on proline nitrogen source" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on proline nitrogen source" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000244
name: loss of viability upon nutrient depletion
def: "A cell population phenotype in which a smaller than normal proportion of the population remains viable when cells are deprived of nutrients such as carbon or nitrogen." [PomBase:mah]
comment: Use this term to annotate experiments in which a culture is grown under nutrient-depleted conditions, and then the number of cells viable enough to form a colony upon return to nutrient-replete conditions is measured and compared to wild type.
synonym: "growth defect, required during nutrient depletion" RELATED [PomBase:mah]
synonym: "loss of viability upon nutrient starvation" EXACT [PomBase:al]
synonym: "sensitive to nitrogen starvation" RELATED [PomBase:al]
is_a: FYPO:0001985 ! abnormal phenotype
is_a: FYPO:0002057 ! cell population viability
relationship: includes_cells_with_phenotype FYPO:0000713 ! abnormal cellular response to starvation
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000245
name: loss of viability in stationary phase
def: "A cell population phenotype in which a smaller than normal proportion of the population remains viable after entering stationary phase." [PomBase:mah]
comment: Use this term to annotate experiments in which a culture is grown to stationary phase, and then the number of cells viable enough to form a colony upon return to conditions supporting vegetative growth is measured and compared to wild type.
synonym: "decreased viability in stationary phase" EXACT [PomBase:mah]
synonym: "growth defect, required for stationary phase" RELATED [PomBase:mah]
synonym: "reduced viability in stationary phase" EXACT [PomBase:mah]
is_a: FYPO:0001985 ! abnormal phenotype
is_a: FYPO:0002057 ! cell population viability
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000246
name: antioxidant required for growth
def: "A cell population phenotype in which a cell population grows only in the presence of an antioxidant in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "antioxidant required for cell population growth" EXACT [PomBase:mah]
synonym: "antioxidant required for vegetative cell growth" EXACT [PomBase:mah]
synonym: "growth auxotrophic for antioxidant" EXACT [PomBase:al]
synonym: "growth defect, requires antioxidant for growth" EXACT [PomBase:mah]
is_a: FYPO:0001356 ! abnormal vegetative cell population growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000247
name: decreased cell population growth at high temperature
def: "A vegetative cell population growth phenotype in which cell growth is decreased relative to normal at a high temperature." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise. For fission yeast, high temperature usually corresponds to above 32 degrees Celsius.
synonym: "decreased growth at high temperature" BROAD [PomBase:mah]
synonym: "decreased vegetative cell population growth at high temperature" EXACT [PomBase:mah]
synonym: "growth defect, slow growth at high temperatures" RELATED [PomBase:mah]
synonym: "reduced growth at high temperature" RELATED [PomBase:mah]
synonym: "slow growth at high temperature" RELATED [PomBase:mah]
is_a: FYPO:0001355 ! decreased vegetative cell population growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000249
name: decreased cell population growth on ammonia nitrogen source
alt_id: FYPO:0000248
def: "A vegetative cell population phenotype in which cell growth is decreased relative to normal in a medium containing ammonia as the nitrogen source." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "decreased growth on ammonia nitrogen source" BROAD [PomBase:mah]
synonym: "decreased vegetative cell growth on ammonia nitrogen source" EXACT [PomBase:mah]
synonym: "growth defect, slow growth in minimal media" RELATED [PomBase:mah]
synonym: "growth defect, slow growth with ammonia nitrogen source" NARROW [PomBase:mah]
synonym: "reduced cell growth on ammonia nitrogen source" EXACT [PomBase:mah]
synonym: "slow cell growth in minimal medium" RELATED [PomBase:mah]
synonym: "slow cell growth on ammonia nitrogen source" NARROW [PomBase:mah]
is_a: FYPO:0001355 ! decreased vegetative cell population growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000250
name: decreased cell population growth on proline nitrogen source
def: "A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing L-proline as the nitrogen source." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "decreased growth on proline nitrogen source" BROAD [PomBase:mah]
synonym: "decreased vegetative cell growth on proline nitrogen source" EXACT [PomBase:mah]
synonym: "growth defect, slow growth with proline nitrogen source" RELATED [PomBase:mah]
synonym: "reduced cell growth on proline nitrogen source" RELATED [PomBase:mah]
synonym: "slow cell growth on proline nitrogen source" NARROW [PomBase:mah]
is_a: FYPO:0001355 ! decreased vegetative cell population growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000251
name: decreased cell population growth on galactose carbon source
def: "A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing galactose as the carbon source." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "decreased growth on galactose carbon source" BROAD [PomBase:mah]
synonym: "decreased vegetative cell growth on galactose carbon source" EXACT [PomBase:mah]
synonym: "growth defects, growth inhibition in galactose-based medium" RELATED [PomBase:mah]
synonym: "reduced cell growth on galactose carbon source" EXACT [PomBase:mah]
synonym: "slow cell growth on galactose carbon source" NARROW [PomBase:mah]
is_a: FYPO:0001355 ! decreased vegetative cell population growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000252
name: increased spontaneous diploidization
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which heterothallic haploid cells spontaneously form cells with diploid DNA content at a higher frequency than normal." [PMID:19101542, PomBase:mah]
synonym: "high-frequency diploidization in heterothallic strains" EXACT [PomBase:mah]
synonym: "increased spontaneous diploidization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000253
name: increased HMG-CoA reductase activity
def: "A molecular function phenotype in which the observed rate of hydroxymethylglutaryl-CoA reductase (NADPH) activity is increased." [PMID:19041767, PomBase:mah]
is_a: FYPO:0000662 ! increased catalytic activity
is_a: FYPO:0000689 ! abnormal oxidoreductase activity
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000254
name: increased protein processing
def: "A cellular metabolism phenotype observed in the vegetative growth phase of the life cycle in which the observed occurrence of protein processing is increased." [PMID:19520858, PomBase:mah]
synonym: "increased protein processing during vegetative growth" EXACT [PomBase:mah]
synonym: "increased Sre1 cleavage" NARROW [PomBase:mah]
is_a: FYPO:0001421 ! abnormal protein processing
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000255
name: nuclear protein accumulation
def: "A localization phenotype observed in the vegetative growth phase of the life cycle in which specific proteins abnormally accumulate, and are constitutively located in, the nucleus." [PMID:12896976, PomBase:mah]
synonym: "localization defects, nuclear accumulation of Pap1 and Sty1" NARROW [PomBase:mah]
synonym: "nuclear accumulation of Pap1 and Sty1" NARROW [PomBase:mah]
synonym: "nuclear accumulation of protein" EXACT [PomBase:mah]
synonym: "nuclear protein accumulation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000762 ! protein accumulation
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000256
name: mutator
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which mutations occur at a higher rate than normal." [PomBase:mah]
synonym: "mutator during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000257
name: normal phenotype
def: "A phenotype that shows no detectable differences from normal. In fission yeast, the characteristics of wild type cells of the sequenced strain (972 h-) or the isogenic h+ or h90 strains are regarded as normal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast normal phenotype" EXACT [PomBase:mah]
synonym: "no obvious phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000001 ! phenotype
relationship: inheres_in FYPO:0000001 ! phenotype
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000258
name: normal phenotype during exponential phase
def: "A cell phenotype that shows no detectable differences from normal during exponential growth." [PomBase:mah]
synonym: "fission yeast normal phenotype during exponential phase" EXACT [PomBase:mah]
synonym: "no phenotype in exponential phase" EXACT [PomBase:mah]
synonym: "normal phenotype during exponential phase during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001312 ! normal vegetative phenotype
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000260
name: abnormal G1/S phase transcription
def: "A gene expression phenotype in which regulation of transcription during the G1/S phase of the cell cycle is abnormal." [PomBase:mah]
synonym: "abnormal G1/S phase transcription during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal regulation of transcription involved in G1/S phase of mitotic cell cycle" EXACT [PomBase:mah]
synonym: "periodic cell-cycle expression, abolished" RELATED [PomBase:mah]
is_a: FYPO:0001335 ! transcription regulation phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000261
name: pleiotropic effects
def: "Multiple different phenotypes due to a single mutation." [PomBase:mah]
comment: This term was made obsolete because genes, alleles, etc. can be annotated with multiple specific phenotype terms.
synonym: "pleiotropic effects during vegetative growth" EXACT [PomBase:mah]
is_obsolete: true
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000262
name: abnormal cellular response to reactive oxygen species during G0 phase
def: "A cell phenotype in which cells do not respond normally to reactive oxygen species, resulting in accumulation of oxidative damage including DNA damage, during G0 phase." [PMID:19197239, PomBase:mah]
synonym: "protects against physiological oxidative damage in G0" RELATED [PomBase:mah]
is_a: FYPO:0000180 ! abnormal cellular response to oxidative stress
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000263
name: abnormal regulation of translation in response to stress
def: "A gene expression phenotype in which regulation of translation in response to stress is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "protein synthesis after stress, defective" RELATED [PomBase:mah]
is_a: FYPO:0000162 ! abnormal cellular response to stress
is_a: FYPO:0000289 ! translation regulation phenotype
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000264
name: resistance to microtubule-destabilizing substance
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of a microtubule-destabilizing substance than normal." [PomBase:mah]
synonym: "resistance to microtubule depolymerizing drugs" EXACT [PomBase:mah]
synonym: "resistance to microtubule destabilising substance" EXACT [PomBase:mah]
synonym: "resistance to microtubule-destabilizing substance during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000265
name: sensitive to DNA damage
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to DNA damage." [PomBase:mah]
comment: Also consider specific phenotype terms for sensitivity to substances or other stimuli that can damage DNA, e.g. 'sensitive to DNA damaging agents' (FYPO:0000266), 'sensitive to methyl methanesulfonate' (FYPO:0000089), 'sensitive to UV' (FYPO:0000268), etc.
synonym: "hypersensitive to DNA damage" EXACT [PomBase:mah]
synonym: "sensitive to DNA damage during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000157 ! abnormal response to DNA damage stimulus
is_a: FYPO:0000304 ! sensitive to stress
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000266
name: sensitive to DNA damaging agents
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a genotoxin, any chemical compound that can act to induce direct or indirect DNA damage. Cells stop growing (and may die) at a concentration of a DNA damaging agent that allows wild type cells to grow." [CHEBI:50902, PomBase:mah]
synonym: "hypersensitive to DNA damaging agents" EXACT [PomBase:mah]
synonym: "sensitive to DNA damaging agents during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000267
name: sensitive to ionizing radiation
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to ionizing radiation." [PomBase:mah]
synonym: "hypersensitive to ionizing radiation" EXACT [PomBase:mah]
synonym: "sensitive to gamma irradiation" NARROW [PomBase:al]
synonym: "sensitive to gamma radiation" NARROW [PomBase:al]
synonym: "sensitive to ionizing radiation during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to IR" EXACT [PomBase:mah]
is_a: FYPO:0000304 ! sensitive to stress
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000268
name: sensitive to UV
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to ultraviolet light." [PomBase:mah]
synonym: "hypersensitive to UV" EXACT [PomBase:mah]
synonym: "increased sensitivity to UV irradiation" EXACT [PomBase:vw]
synonym: "sensitive to ultraviolet light" EXACT [PomBase:mah]
synonym: "sensitive to UV during vegetative growth" EXACT [PomBase:mah]
synonym: "UV resistance: decreased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000304 ! sensitive to stress
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000269
name: sensitive to microtubule depolymerizing drugs
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a microtubule-destabilizing substance. Cells stop growing (and may die) at a concentration of a microtubule-depolymerizing drug that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to microtubule depolymerizing drugs" EXACT [PomBase:mah]
synonym: "sensitive to microtubule depolymerizing drugs during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-04-19T02:59:38Z

[Term]
id: FYPO:0000270
name: sensitive to osmotic stress
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to osmotic stress." [PomBase:mah]
synonym: "hypersensitive to osmotic stress" EXACT [PomBase:mah]
synonym: "osmotic stress resistance: decreased" EXACT [SGD:phenotype_annotation]
synonym: "sensitive to osmotic stress during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000193 ! abnormal cellular response to osmotic stress
is_a: FYPO:0000304 ! sensitive to stress
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000271
name: sensitive to salt stress
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a salt stress." [PomBase:mah]
synonym: "hypersensitive to salt stress" EXACT [PomBase:mah]
synonym: "ionic stress resistance: decreased" EXACT [SGD:phenotype_annotation]
synonym: "sensitive to salt stress during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000270 ! sensitive to osmotic stress
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000272
name: abolished septum formation
def: "A septation phenotype observed in the vegetative growth phase of the life cycle in which a cell fails to form a septum." [PMID:9649519, PomBase:mah]
synonym: "septum formation abolished" EXACT [PomBase:mah]
synonym: "septum formation abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "septum formation: absent" EXACT [SGD:phenotype_annotation]
synonym: "septum initiation defective" RELATED [PomBase:mah]
is_a: FYPO:0000117 ! abnormal septation
is_a: FYPO:0000186 ! abnormal cell division
is_a: FYPO:0000417 ! abolished cytokinesis
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000273
name: centromeric outer repeat transcripts absent
def: "An RNA metabolism phenotype observed in the vegetative growth phase of the life cycle in which small interfering RNA transcripts derived from the centromere outer repeat region are absent." [PMID:20211136, PomBase:mah]
synonym: "centromeric outer repeat transcripts absent during vegetative growth" EXACT [PomBase:mah]
synonym: "siRNAs homologous to outer repeats absent" EXACT [PomBase:vw]
synonym: "siRNAs homologous to outer repeats undetectable" EXACT [PomBase:mah]
is_a: FYPO:0001117 ! decreased RNA level during vegetative growth
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000274
name: increased duration of mitotic M phase
alt_id: FYPO:0000609
def: "A cell cycle phenotype in the duration of M phase of the mitotic cell cycle is longer than normal." [PomBase:mah]
synonym: "delayed mitotic M phase progression" RELATED [PomBase:mah]
synonym: "delayed mitotic M phase progression during vegetative growth" EXACT [PomBase:mah]
synonym: "increased mitotic M phase duration" EXACT [PomBase:mah]
synonym: "increased mitotic M phase duration during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in M phase: delayed" EXACT [SGD:phenotype_annotation]
synonym: "spindle checkpoint activated" RELATED [PomBase:mah]
is_a: FYPO:0000607 ! abnormal mitotic M phase progression
is_a: FYPO:0001069 ! increased duration of mitotic cell cycle phase
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000275
name: spindle checkpoint required
def: "A cell cycle phenotype in which cells are viable only if a spindle checkpoint functions normally." [PMID:15483052, PomBase:mah]
comment: This term was made obsolete because it was used to represent two different phenotypes.
is_obsolete: true
consider: FYPO:0000029
consider: FYPO:0000324
consider: FYPO:0000333
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000276
name: monopolar mitotic spindle
def: "A cellular structure phenotype in which the mitotic spindle forms with microtubules emanating from only one pole." [PMID:11792803, PMID:9763447, PomBase:mah]
synonym: "monopolar mitotic spindle during vegetative growth" EXACT [PomBase:mah]
synonym: "spindle defects, monopolar mitotic spindle" EXACT [PomBase:mah]
synonym: "spindle defects, monopolar spindle" EXACT [PomBase:mah]
is_a: FYPO:0000338 ! abnormal mitotic spindle
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000278
name: decreased cell population growth following spore germination
def: "A cell population phenotype in which cell population growth is decreased following spore germination, resulting in the formation of a smaller colony than normal in a given amount of time." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "decreased growth following spore germination" BROAD [PomBase:mah]
synonym: "reduced cell population growth following spore germination" EXACT [PomBase:mah]
synonym: "slow cell population growth following spore germination" NARROW [PomBase:mah]
synonym: "spores produced smaller colonies" RELATED [PomBase:mah]
is_a: FYPO:0000046 ! decreased cell population growth
is_a: FYPO:0000305 ! abnormal spore germination
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000279
name: formation of azygotic ascus upon sporulation
def: "A sporulation phenotype in which azygotic asci form following conjugation and subsequent sporulation. Azygotic ascus formation occurs when meiosis takes place within a diploid cell rather than in a zygote produced by sporulation. Zygotes can resume vegetative growth and form colonies of diploid cells if returned to rich media before commitment to meiosis; under nitrogen starvation, diploid cells heterozygous for mating type will undergo azygotic meiosis. Azygotic asci have a characteristic linear morphology resembling that of a single vegetatively growing cell." [PMID:16169489, PMID:18780734, PMID:20404563, PomBase:mah]
synonym: "abnormal sporulation resulting in formation of azygotic asci" EXACT [PomBase:mah]
synonym: "formation of azygotic asci upon sporulation" EXACT [PomBase:mah]
synonym: "sporulation defects, azygotic asci" EXACT [PomBase:mah]
is_a: FYPO:0000121 ! abnormal sporulation
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000280
name: sterile
alt_id: FYPO:0000638
def: "A cellular process phenotype in which conjugation does not occur." [PomBase:mah]
synonym: "conjugation abolished" EXACT [PomBase:mah]
synonym: "zygote formation abolished" RELATED [PomBase:mah]
is_a: FYPO:0000031 ! abnormal conjugation
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000281
name: fragmented vacuoles
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which vacuoles are broken into more, smaller fragments than normal." [PomBase:mah]
synonym: "fragmented vacuoles during vegetative growth" EXACT [PomBase:mah]
synonym: "vacuole organization defects, fragmented vacuoles" EXACT [PomBase:mah]
is_a: FYPO:0000368 ! abnormal vacuolar morphology
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000282
name: viable cell at high temperature
def: "A viability phenotype observed in the vegetative growth phase of the life cycle in which a cell is able to survive at a high temperature." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'viable cell population' (FYPO:0002058) or one of its descendants.
synonym: "cell viable at high temperature" EXACT [PomBase:mah]
synonym: "viable cell at high temperature during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001491 ! viable vegetative cell
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000283
name: mitotic chromosome fragmentation upon segregation
def: "A chromosome segregation phenotype in which chromosomes are broken during mitotic chromosome segregation." [PomBase:mah]
synonym: "chromosome fragmentation upon mitotic chromosome segregation" EXACT [PomBase:mah]
synonym: "chromosome fragmentation upon segregation during mitosis" EXACT [PomBase:mah]
synonym: "chromosome fragmentation upon segregation during vegetative growth" EXACT [PomBase:mah]
synonym: "chromosome segregation defects, chromosome fragmentation" EXACT [PomBase:mah]
is_a: FYPO:0000141 ! abnormal mitotic sister chromatid segregation
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000284
name: large and small daughter nuclei
def: "A mitosis phenotype observed in the vegetative growth phase of the life cycle in which the nucleus divides unequally to produce one daughter nucleus that is larger than the other." [PMID:8769419, PomBase:mah]
synonym: "large and small daughter nuclei during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000337 ! abnormal mitosis
created_by: midori
creation_date: 2011-04-19T04:37:01Z

[Term]
id: FYPO:0000286
name: sensitive to manganese depletion
def: "A cell population phenotype observed in the vegetative growth phase of the life cycle in which a population of cells grow poorly in medium that has a low concentration of manganese (Mn2+)." [PMID:14723709, PomBase:mah]
synonym: "hypersensitive to manganese depletion" EXACT [PomBase:mah]
synonym: "sensitive to manganese depletion during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001356 ! abnormal vegetative cell population growth
created_by: midori
creation_date: 2011-04-20T01:42:21Z

[Term]
id: FYPO:0000287
name: abnormal subcellular structure
def: "A cellular structure phenotype in which the amount, distribution, or morphology of a cell part is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
is_a: FYPO:0000136 ! cellular structure phenotype
is_a: FYPO:0001985 ! abnormal phenotype
created_by: midori
creation_date: 2011-04-21T11:18:18Z

[Term]
id: FYPO:0000288
name: gene expression regulation phenotype
def: "A regulation phenotype that affects the regulation of gene expression." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast gene expression regulation phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000142 ! gene expression phenotype
is_a: FYPO:0000145 ! regulation phenotype
created_by: midori
creation_date: 2011-04-21T02:22:36Z

[Term]
id: FYPO:0000289
name: translation regulation phenotype
def: "A gene expression phenotype that affects the regulation of translation." [PomBase:mah]
synonym: "fission yeast translation regulation phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000288 ! gene expression regulation phenotype
created_by: midori
creation_date: 2011-04-21T02:25:06Z

[Term]
id: FYPO:0000290
name: transcription phenotype
def: "A cellular process phenotype that affects DNA-dependent transcription." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast transcription phenotype" EXACT [PomBase:mah]
synonym: "transcription phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000142 ! gene expression phenotype
is_a: FYPO:0000294 ! RNA metabolism phenotype
created_by: midori
creation_date: 2011-04-21T02:31:20Z

[Term]
id: FYPO:0000291
name: translation phenotype
def: "A cellular process phenotype that affects translation." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast translation phenotype" EXACT [PomBase:mah]
synonym: "translation phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000142 ! gene expression phenotype
is_a: FYPO:0001348 ! cellular metabolism phenotype during vegetative growth
created_by: midori
creation_date: 2011-04-21T02:31:20Z

[Term]
id: FYPO:0000292
name: nucleic acid metabolism phenotype
def: "A cellular process phenotype that affects any nucleic acid metabolic process." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast nucleic acid metabolism phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000140 ! cellular metabolism phenotype
created_by: midori
creation_date: 2011-04-21T02:31:20Z

[Term]
id: FYPO:0000293
name: DNA metabolism phenotype
def: "A cellular process phenotype that affects any DNA metabolic process." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast DNA metabolism phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000292 ! nucleic acid metabolism phenotype
created_by: midori
creation_date: 2011-04-21T02:31:20Z

[Term]
id: FYPO:0000294
name: RNA metabolism phenotype
def: "A cellular process phenotype that affects any RNA metabolic process." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast RNA metabolism phenotype" EXACT [PomBase:mah]
synonym: "RNA metabolism phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001347 ! nucleic acid metabolism phenotype during vegetative growth
created_by: midori
creation_date: 2011-04-21T02:31:20Z

[Term]
id: FYPO:0000295
name: cytoskeleton organization phenotype
def: "A cellular process phenotype that affects cytoskeleton organization. Cytoskeleton organization results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures." [GO:0007010, PomBase:mah]
synonym: "cytoskeleton organisation phenotype" EXACT [PomBase:mah]
synonym: "fission yeast cytoskeleton organization phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000334 ! cellular component organization phenotype
created_by: midori
creation_date: 2011-04-21T02:31:20Z

[Term]
id: FYPO:0000296
name: actin cytoskeleton organization phenotype
def: "A cellular process phenotype that affects the organization of the actin cytoskeleton. Actin cytoskeleton organization results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and associated proteins." [GO:0030036, PomBase:mah]
comment: Consider annotating to 'abnormal actin cytoskeleton morphology' (FYPO:0000350), but note that an abnormal cytoskeleton organization process may, but does not necessarily, result in abnormal cytoskeleton morphology.
synonym: "actin cytoskeleton organisation phenotype" EXACT [PomBase:mah]
synonym: "actin cytoskeleton organization phenotype during vegetative growth" EXACT [PomBase:mah]
synonym: "fission yeast actin cytoskeleton organization phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000295 ! cytoskeleton organization phenotype
is_a: FYPO:0001331 ! cellular process phenotype during vegetative growth
created_by: midori
creation_date: 2011-04-21T02:31:20Z

[Term]
id: FYPO:0000297
name: microtubule cytoskeleton organization phenotype
def: "A cellular process phenotype that affects the organization of the microtubule cytoskeleton. Microtubule cytoskeleton organization results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and associated proteins." [GO:0000226, PomBase:mah]
synonym: "fission yeast microtubule cytoskeleton organization phenotype" EXACT [PomBase:mah]
synonym: "microtubule cytoskeleton organisation phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000295 ! cytoskeleton organization phenotype
created_by: midori
creation_date: 2011-04-21T02:31:20Z

[Term]
id: FYPO:0000298
name: cellular response phenotype
def: "A cellular process phenotype that affects a response to a stimulus." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast cellular response phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000114 ! cellular process phenotype
created_by: midori
creation_date: 2011-04-21T04:47:15Z

[Term]
id: FYPO:0000299
name: microcolony formation
def: "A cell population phenotype in which a cell undergoes one or a few rounds of cell division before cells die, resulting in the formation a colony that contains only a few cells." [PomBase:mah]
is_a: FYPO:0000003 ! cell population phenotype
is_a: FYPO:0001985 ! abnormal phenotype
relationship: comprises_cells_with_phenotype FYPO:0000049 ! inviable cell
created_by: midori
creation_date: 2011-04-26T02:13:39Z

[Term]
id: FYPO:0000300
name: biological process phenotype
def: "A phenotype that affects a biological process." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast biological process phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000001 ! phenotype
created_by: midori
creation_date: 2011-04-26T02:25:13Z

[Term]
id: FYPO:0000301
name: mating phenotype
def: "A biological process phenotype that affects conjugation." [PomBase:mah]
synonym: "conjugation phenotype" EXACT [PomBase:mah]
synonym: "fission yeast mating phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000114 ! cellular process phenotype
created_by: midori
creation_date: 2011-04-26T02:29:20Z

[Term]
id: FYPO:0000302
name: abnormal response to pheromone
def: "A conjugation phenotype in which a cell's response to mating pheromone is abnormal." [PomBase:mah]
synonym: "abnormal response to pheromone involved in conjugation with cellular fusion" EXACT [PomBase:mah]
synonym: "defective response to pheromone" EXACT [PomBase:mah]
is_a: FYPO:0000298 ! cellular response phenotype
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-04-26T02:36:20Z

[Term]
id: FYPO:0000303
name: decreased conjugation frequency
def: "A conjugation phenotype in which conjugation occurs less frequently than normal." [PomBase:mah]
comment: Note that this term refers specifically to conjugation, whereas experiments that measure mating efficiency often do so by counting zygotes plus asci, sometimes also including spores. For such experiments, we recommend using 'decreased mating efficiency' (FYPO:0000708).
synonym: "decreased conjugation efficiency" EXACT [PomBase:mah]
synonym: "decreased occurrence of conjugation" EXACT [PomBase:mah]
synonym: "reduced conjugation efficiency" EXACT [PomBase:mah]
synonym: "reduced conjugation frequency" EXACT [PomBase:mah]
synonym: "reduced zygote formation" RELATED [PomBase:mah]
is_a: FYPO:0000031 ! abnormal conjugation
created_by: midori
creation_date: 2011-04-26T02:40:00Z

[Term]
id: FYPO:0000304
name: sensitive to stress
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a stress." [PomBase:mah]
synonym: "hypersensitive to stress" EXACT [PomBase:mah]
synonym: "sensitive to stress during vegetative growth" EXACT [PomBase:mah]
synonym: "stress resistance: decreased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001341 ! abnormal cellular response to stress during vegetative growth
created_by: midori
creation_date: 2011-04-26T03:10:44Z

[Term]
id: FYPO:0000305
name: abnormal spore germination
def: "A cellular process phenotype in which spore germination is abnormal." [PomBase:mah]
is_a: FYPO:0000628 ! abnormal cellular process
is_a: FYPO:0000679 ! developmental process phenotype
created_by: midori
creation_date: 2011-04-27T11:47:04Z

[Term]
id: FYPO:0000306
name: abolished spore germination
def: "A cellular process phenotype in which spore germination does not occur." [PomBase:mah]
synonym: "inviable spore" EXACT [PomBase:jh, PomBase:mah]
synonym: "spore germination abolished" EXACT [PomBase:mah]
is_a: FYPO:0000305 ! abnormal spore germination
created_by: midori
creation_date: 2011-04-27T11:47:04Z

[Term]
id: FYPO:0000307
name: spore germination abolished, small spores
def: "A cellular process phenotype in which spore germination does not occur, and spores are smaller than normal." [PomBase:mah]
is_a: FYPO:0000309 ! spore germination abolished, abnormal spore morphology
relationship: has_part FYPO:0000306 ! abolished spore germination
relationship: has_part FYPO:0000346 ! small spores
created_by: midori
creation_date: 2011-04-27T11:47:04Z

[Term]
id: FYPO:0000308
name: spore germination abolished, swollen spores
def: "A cellular process phenotype in which spore germination does not occur, and spores have a larger volume than normal." [PomBase:mah]
is_a: FYPO:0000309 ! spore germination abolished, abnormal spore morphology
relationship: has_part FYPO:0000306 ! abolished spore germination
relationship: has_part FYPO:0000347 ! swollen spores
created_by: midori
creation_date: 2011-04-27T11:47:04Z

[Term]
id: FYPO:0000309
name: spore germination abolished, abnormal spore morphology
def: "A cellular process phenotype in which spore germination does not occur, and spores have abnormal morphology." [PomBase:mah]
synonym: "spore germination abolished, misshapen spores" EXACT [PomBase:mah]
is_a: FYPO:0000306 ! abolished spore germination
relationship: has_part FYPO:0000306 ! abolished spore germination
relationship: has_part FYPO:0000348 ! abnormal spore morphology
created_by: midori
creation_date: 2011-04-27T11:47:04Z

[Term]
id: FYPO:0000310
name: inviable after spore germination with normal germ tube morphology
def: "A phenotype in which a spore germinates to produce a normal germ tube, but does not go on to form a viable dividing cell." [PomBase:mah]
synonym: "essential; germinating spore with normal germ tube morphology" RELATED [PomBase:mah]
synonym: "inviable following spore germination with normal germ tube morphology" EXACT [PomBase:mah]
synonym: "inviable germinating spore with normal germ tube morphology" RELATED [PomBase:mah]
is_a: FYPO:0001991 ! inviable after spore germination, without cell division
created_by: midori
creation_date: 2011-04-27T11:47:04Z

[Term]
id: FYPO:0000311
name: inviable after spore germination with normal, unseptated germ tube morphology
def: "A phenotype in which a spore germinates to produce a normal germ tube, but does not septate or go on to form a viable dividing cell." [PomBase:mah]
synonym: "essential; germinating spore with normal, unseptated germ tube morphology" RELATED [PomBase:mah]
synonym: "inviable following spore germination with normal, unseptated germ tube morphology" EXACT [PomBase:mah]
synonym: "inviable germinating spore with normal, unseptated germ tube morphology" RELATED [PomBase:mah]
is_a: FYPO:0000310 ! inviable after spore germination with normal germ tube morphology
created_by: midori
creation_date: 2011-04-27T11:47:04Z

[Term]
id: FYPO:0000312
name: inviable after spore germination with normal, septated germ tube morphology
def: "A phenotype in which a spore germinates to produce a normal germ tube, and undergoes septation, but does not go on to form a viable dividing cell." [PomBase:mah]
synonym: "essential; germinating spore with normal, septated germ tube morphology" RELATED [PomBase:mah]
synonym: "inviable following spore germination with normal, septated germ tube morphology" EXACT [PomBase:mah]
synonym: "inviable germinating spore with normal, septated germ tube morphology" RELATED [PomBase:mah]
is_a: FYPO:0000310 ! inviable after spore germination with normal germ tube morphology
created_by: midori
creation_date: 2011-04-27T11:47:04Z

[Term]
id: FYPO:0000313
name: inviable after spore germination with abnormal germ tube morphology
def: "A phenotype in which a spore germinates to produce a germ tube with abnormal morphology, and does not go on to form a viable dividing cell." [PomBase:mah]
synonym: "essential; germinating spore with abnormal germ tube morphology" RELATED [PomBase:mah]
synonym: "inviable following spore germination with abnormal germ tube morphology" EXACT [PomBase:mah]
synonym: "inviable germinating spore with abnormal germ tube morphology" RELATED [PomBase:mah]
is_a: FYPO:0000348 ! abnormal spore morphology
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
is_a: FYPO:0001991 ! inviable after spore germination, without cell division
created_by: midori
creation_date: 2011-04-27T11:47:04Z

[Term]
id: FYPO:0000314
name: inviable after spore germination with elongated germ tube
def: "A phenotype in which a spore germinates to produce an elongated germ tube, and does not go on to form a viable dividing cell." [PomBase:mah]
synonym: "essential; germinating spore with elongated germ tube" RELATED [PomBase:mah]
synonym: "inviable following spore germination with elongated germ tube" EXACT [PomBase:mah]
synonym: "inviable germinating spore with elongated germ tube" RELATED [PomBase:mah]
synonym: "inviable germinating spore with long germ tube" EXACT [PomBase:vw]
is_a: FYPO:0000313 ! inviable after spore germination with abnormal germ tube morphology
is_a: FYPO:0001122 ! elongated vegetative cell
is_a: FYPO:0001123 ! elongated spore
created_by: midori
creation_date: 2011-04-27T11:47:04Z

[Term]
id: FYPO:0000315
name: inviable after spore germination with elongated, septated germ tube
def: "A phenotype in which a spore germinates to produce an elongated germ tube, and undergoes septation, but does not go on to form a viable dividing cell." [PomBase:mah]
synonym: "essential; germinating spore with elongated, septated germ tube" RELATED [PomBase:mah]
synonym: "inviable following spore germination with elongated, septated germ tube" EXACT [PomBase:mah]
synonym: "inviable germinating spore with elongated, septated germ tube" RELATED [PomBase:mah]
synonym: "inviable germinating spore with long, septated germ tube" EXACT [PomBase:vw]
is_a: FYPO:0000313 ! inviable after spore germination with abnormal germ tube morphology
created_by: midori
creation_date: 2011-04-27T11:47:04Z

[Term]
id: FYPO:0000316
name: inviable after spore germination
def: "A viability phenotype in which a spore germinates but fails to produce dividing cells that can survive under normal conditions." [PomBase:jh, PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "essential in germinating spore" RELATED [PomBase:mah]
synonym: "inviable after spore germination" EXACT [PomBase:mah]
synonym: "inviable germinating spore" RELATED [PomBase:mah]
is_a: FYPO:0001489 ! inviable vegetative cell
created_by: midori
creation_date: 2011-04-27T01:13:41Z

[Term]
id: FYPO:0000317
name: mixed population
def: "A cell population phenotype in which a population contains cells with more than one phenotype, usually different morphologies." [PomBase:mah]
is_a: FYPO:0000003 ! cell population phenotype
created_by: midori
creation_date: 2011-04-27T01:32:52Z

[Term]
id: FYPO:0000318
name: inviable mixed population including long cells
def: "A mixed population phenotype in which a microcolony forms, and all cells in the population divide once upon spore germination but are inviable, and some cells are longer than normal." [PomBase:jh, PomBase:mah]
comment: Consider also annotating to 'elongated inviable vegetative cell' (FYPO:0001490) or one of its descendants, to describe the phenotype of the individual elongated cells in the population.
synonym: "essential; mixed population including long cells" RELATED [PomBase:mah]
synonym: "long low penetrance" EXACT [PomBase:jh, PomBase:vw]
is_a: FYPO:0000299 ! microcolony formation
is_a: FYPO:0000317 ! mixed population
relationship: includes_cells_with_phenotype FYPO:0000017 ! elongated cell
created_by: midori
creation_date: 2011-04-27T04:18:16Z

[Term]
id: FYPO:0000319
name: inviable mixed population including spores and divided germinated spores
def: "A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of spores and germinated spores most of which go on to divide once or twice. Some germinated spores remain septated and do not complete cell division." [PomBase:jh, PomBase:mah]
synonym: "essential; mixed population including spores and divided germinated spores" RELATED [PomBase:mah]
synonym: "put cut" RELATED [PomBase:jh]
is_a: FYPO:0000317 ! mixed population
relationship: comprises_cells_with_phenotype FYPO:0000049 ! inviable cell
relationship: includes_cells_with_phenotype FYPO:0000306 ! abolished spore germination
relationship: includes_cells_with_phenotype FYPO:0000320 ! inviable after spore germination, single cell division
created_by: midori
creation_date: 2011-04-27T04:20:40Z

[Term]
id: FYPO:0000320
name: inviable after spore germination, single cell division
def: "A phenotype in which a spore germinates to produce a cell of normal morphology that undergoes a single round of cell division, and then dies." [PomBase:jh, PomBase:mah, PomBase:vw]
synonym: "essential; germinating spore, single cell division" RELATED [PomBase:mah]
synonym: "inviable following spore germination, single cell division" EXACT [PomBase:mah]
synonym: "inviable germinating spore, single cell division" RELATED [PomBase:mah]
is_a: FYPO:0000316 ! inviable after spore germination
created_by: midori
creation_date: 2011-04-27T04:25:13Z

[Term]
id: FYPO:0000321
name: inviable mixed population including spores and undivided germinated spores
def: "A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of ungerminated spores and germinated spores that fail to divide." [PomBase:jh, PomBase:mah]
synonym: "essential; mixed population including spores and undivided germinated spores" RELATED [PomBase:mah]
is_a: FYPO:0000317 ! mixed population
relationship: comprises_cells_with_phenotype FYPO:0000049 ! inviable cell
relationship: includes_cells_with_phenotype FYPO:0000316 ! inviable after spore germination
created_by: midori
creation_date: 2011-04-27T04:32:25Z

[Term]
id: FYPO:0000324
name: mitotic metaphase/anaphase transition delay
alt_id: FYPO:0000393
def: "A cell cycle phenotype in which the onset of anaphase of the mitotic cell cycle takes place later than normal." [PomBase:mah]
synonym: "cell cycle passage through the metaphase-anaphase transition: delayed" EXACT [SGD:phenotype_annotation]
synonym: "delayed cell cycle passage through mitotic metaphase-anaphase transition" EXACT [PomBase:mah]
synonym: "mitotic cell cycle delay at metaphase/anaphase transition" EXACT [PomBase:mah]
synonym: "mitotic metaphase/anaphase transition delay during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000059 ! abnormal mitotic cell cycle progression
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-05-09T04:36:10Z

[Term]
id: FYPO:0000325
name: abnormal attachment of spindle microtubules to kinetochore
def: "A cellular process phenotype in which the attachment of spindle microtubules to the kinetochore during a mitotic or meiotic nuclear division is abnormal." [PomBase:mah]
synonym: "abnormal attachment of spindle microtubules to kinetochore during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-05-11T01:50:15Z

[Term]
id: FYPO:0000326
name: abnormal sister chromatid biorientation
def: "A cellular process phenotype in which the stable attachment of sister chromatids to microtubules emanating from opposite poles of the mitotic spindle is abnormal." [PomBase:mah]
synonym: "abnormal sister chromatid biorientation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000325 ! abnormal attachment of spindle microtubules to kinetochore
is_a: FYPO:0001350 ! abnormal microtubule cytoskeleton organization during vegetative growth
created_by: midori
creation_date: 2011-05-11T01:51:05Z

[Term]
id: FYPO:0000327
name: resistance to trichostatin A
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of trichostatin A than normal." [PomBase:mah]
synonym: "resistance to trichostatin A during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to trichostatin A" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-05-11T02:55:53Z

[Term]
id: FYPO:0000328
name: abnormal protein metabolic process
def: "A cellular process phenotype that affects protein metabolism in the cell." [PomBase:mah]
synonym: "abnormal cellular protein metabolic process" EXACT [PomBase:mah]
synonym: "abnormal protein metabolic process during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001363 ! abnormal metabolic process during vegetative growth
created_by: midori
creation_date: 2011-05-11T03:39:46Z

[Term]
id: FYPO:0000329
name: abnormal protein modification
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein modification is abnormal. All modifications may be affected, or only modifications of a certain type, or on specific proteins, or even specific sites within specific proteins." [PomBase:mah]
synonym: "abnormal protein modification during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal protein/peptide modification" EXACT [PomBase:mah]
synonym: "protein/peptide modification: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000328 ! abnormal protein metabolic process
created_by: midori
creation_date: 2011-05-11T03:40:46Z

[Term]
id: FYPO:0000330
name: abnormal histone modification
def: "A cellular process phenotype that affects histone modification." [PomBase:mah]
synonym: "abnormal histone modification during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000329 ! abnormal protein modification
is_a: FYPO:0001352 ! abnormal chromatin organization during vegetative growth
created_by: midori
creation_date: 2011-05-11T03:41:32Z

[Term]
id: FYPO:0000331
name: decreased histone acetylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone acetylation occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased histone acetylation during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced histone acetylation" EXACT [PomBase:mah]
is_a: FYPO:0000456 ! abnormal histone acetylation
created_by: midori
creation_date: 2011-05-11T03:42:20Z

[Term]
id: FYPO:0000332
name: increased histone acetylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone acetylation occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased histone acetylation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000456 ! abnormal histone acetylation
created_by: midori
creation_date: 2011-05-11T03:43:21Z

[Term]
id: FYPO:0000333
name: mitotic G1/S transition delay
alt_id: FYPO:0000396
alt_id: FYPO:0000480
alt_id: FYPO:0000543
def: "A cell cycle phenotype in which the G1/S transition of the mitotic cell cycle takes place later than normal. The duration of G1 phase is thus longer than normal." [PomBase:mah]
comment: A G1/S delay may indicate that a checkpoint, such as the cell size checkpoint or the G1/S DNA damage checkpoint, is activated. Checkpoint activation can be tested using checkpoint kinase mutants.
synonym: "cell cycle progression through the G1/S phase transition: delayed" EXACT [SGD:phenotype_annotation]
synonym: "delayed cell cycle progression through mitotic G1/S phase transition" EXACT [PomBase:mah]
synonym: "delayed mitotic G1 phase progression" RELATED [PomBase:mah]
synonym: "increased duration of mitotic G1 phase" EXACT [PomBase:mah]
synonym: "increased duration of mitotic G1 phase during vegetative growth" EXACT [PomBase:mah]
synonym: "increased duration of mitotic G1 phase progression" EXACT [PomBase:mah]
synonym: "mitotic cell cycle delay at G1/S transition" EXACT [PomBase:mah]
synonym: "mitotic cell cycle delay in G1" RELATED [PomBase:mah]
synonym: "mitotic cell cycle progression in G1 phase: delayed" RELATED [SGD:phenotype_annotation]
synonym: "mitotic cell cycle progression in G1 phase: increased duration" EXACT [SGD:phenotype_annotation]
synonym: "mitotic G1/S transition delay during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000394 ! abnormal cell cycle progression through mitotic G1/S phase transition
is_a: FYPO:0000409 ! delayed cell cycle phase transition
is_a: FYPO:0000602 ! abnormal mitotic G1 phase progression
is_a: FYPO:0001069 ! increased duration of mitotic cell cycle phase
created_by: midori
creation_date: 2011-05-11T04:08:59Z

[Term]
id: FYPO:0000334
name: cellular component organization phenotype
def: "A phenotype that affects a process of cellular component organization, i.e. the assembly, arrangement of constituent parts, or disassembly of a cellular component, that occurs at the cellular level." [PomBase:mah]
synonym: "cellular component organisation phenotype" EXACT [PomBase:mah]
synonym: "cellular component organization phenotype at cellular level" EXACT [PomBase:mah]
synonym: "fission yeast cellular component organization phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000114 ! cellular process phenotype
created_by: midori
creation_date: 2011-06-03T11:55:29Z

[Term]
id: FYPO:0000335
name: abnormal cellular component organization
def: "A cellular process phenotype in which any process of cellular component organization at the cellular level is abnormal." [GO:0071842, PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "abnormal cellular component organisation" EXACT [PomBase:mah]
synonym: "abnormal cellular component organization at cellular level" EXACT [PomBase:mah]
is_a: FYPO:0000334 ! cellular component organization phenotype
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-06-03T11:57:14Z

[Term]
id: FYPO:0000336
name: abnormal cellular component assembly
def: "A cellular process phenotype in which any process of cellular component assembly at the cellular level is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "abnormal cellular component assembly at cellular level" EXACT [PomBase:mah]
is_a: FYPO:0000335 ! abnormal cellular component organization
created_by: midori
creation_date: 2011-06-03T12:00:35Z

[Term]
id: FYPO:0000337
name: abnormal mitosis
def: "A cellular process phenotype in which mitosis is abnormal." [PomBase:mah]
synonym: "abnormal mitosis during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000607 ! abnormal mitotic M phase progression
created_by: midori
creation_date: 2011-06-03T12:29:47Z

[Term]
id: FYPO:0000338
name: abnormal mitotic spindle
alt_id: FYPO:0000277
def: "A cellular structure phenotype in which the structure of the mitotic spindle is abnormal." [PomBase:mah]
synonym: "abnormal mitotic spindle during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic spindle defects" EXACT [PomBase:mah]
synonym: "spindle polarity defects" RELATED [PomBase:mah]
is_a: FYPO:0000120 ! abnormal spindle
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
created_by: midori
creation_date: 2011-06-03T01:43:41Z

[Term]
id: FYPO:0000339
name: mislocalized septum
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which a cell has a septum in an abnormal location. The normal location is at the midpoint of the long axis of the cell." [PomBase:mah]
comment: Note that the location of the septum is determined by the location of the contractile ring, which in turn is determined by the location of the cell division site, so an abnormality in cell division site determination can be inferred from this phenotype.
synonym: "abnormal barrier septum site selection" RELATED [PomBase:mah]
synonym: "abnormal septum localization" RELATED [PomBase:mah]
synonym: "abnormal septum location" EXACT [PomBase:mah]
synonym: "abnormal septum position" EXACT [PomBase:mah]
synonym: "abnormal septum positioning" RELATED [PomBase:mah]
synonym: "asymmetric septum" EXACT [PomBase:mah]
synonym: "asymmetrically located septum" EXACT [PomBase:mah]
synonym: "mislocalised septum" EXACT [PomBase:mah]
synonym: "mislocalized septum during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2011-06-13T02:57:21Z

[Term]
id: FYPO:0000340
name: haploinsufficient
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which a single functional copy of a gene does not provide sufficient normal function in a diploid cell." [PomBase:mah]
synonym: "haploinsufficient during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2011-06-13T04:23:38Z

[Term]
id: FYPO:0000341
name: haplosufficient
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which a single functional copy of a gene provides sufficient normal function in a diploid cell." [PomBase:mah]
synonym: "haploproficient" EXACT [PomBase:mah]
synonym: "haplosufficient during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2011-06-13T04:25:07Z

[Term]
id: FYPO:0000342
name: decreased cellular respiration
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of cellular respiration is decreased." [PomBase:mah]
synonym: "decreased cellular respiration during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased respiration" BROAD [PomBase:mah]
synonym: "decreased respiratory metabolism" EXACT [PomBase:mah]
synonym: "reduced cellular respiration" EXACT [PomBase:mah]
synonym: "respiratory metabolism: decreased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000078 ! abnormal cellular respiration
created_by: midori
creation_date: 2011-06-14T04:25:19Z

[Term]
id: FYPO:0000343
name: increased hydrogen sulfide biosynthesis
def: "A cellular metabolism phenotype observed in the vegetative growth phase of the life cycle in which the biosynthesis of hydrogen sulfide is increased." [PomBase:mah]
synonym: "increased H2S biosynthesis " EXACT [PomBase:mah]
synonym: "increased hydrogen sulfide biosynthesis during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001348 ! cellular metabolism phenotype during vegetative growth
relationship: has_output FYPO:0001413 ! increased cellular sulfide level
created_by: midori
creation_date: 2011-06-14T04:44:26Z

[Term]
id: FYPO:0000344
name: enlarged nucleus
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the nucleus is larger than normal." [PomBase:mah]
synonym: "enlarged nuclei" EXACT [PomBase:vw]
synonym: "enlarged nucleus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000062 ! abnormal nuclear morphology
created_by: midori
creation_date: 2011-06-15T03:45:06Z

[Term]
id: FYPO:0000345
name: abnormal protein export from nucleus
def: "A transport phenotype observed in the vegetative growth phase of the life cycle in which the export of protein from the nucleus is abnormal. Export of all proteins or a specific protein may be affected." [PomBase:mah]
comment: Encompasses both export of proteins normally retained in the nucleus and nuclear retention of normally exported proteins. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein export from nucleus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000215 ! abnormal intracellular protein transport
is_a: FYPO:0000506 ! abnormal nuclear export
created_by: midori
creation_date: 2011-06-15T05:11:00Z

[Term]
id: FYPO:0000346
name: small spores
def: "A cell morphology phenotype in which spores have an abnormally low volume." [PomBase:mah]
is_a: FYPO:0000023 ! small cell
is_a: FYPO:0000348 ! abnormal spore morphology
created_by: midori
creation_date: 2011-07-07T03:26:17Z

[Term]
id: FYPO:0000347
name: swollen spores
def: "A cell morphology phenotype in which a spore has a larger volume than normal." [PomBase:mah]
is_a: FYPO:0000025 ! swollen cell
is_a: FYPO:0000348 ! abnormal spore morphology
created_by: midori
creation_date: 2011-07-07T03:34:09Z

[Term]
id: FYPO:0000348
name: abnormal spore morphology
def: "A cell phenotype characterized by altered spore morphology." [PomBase:mah]
is_a: FYPO:0000005 ! abnormal cell morphology
relationship: output_of FYPO:0000121 ! abnormal sporulation
created_by: midori
creation_date: 2011-07-07T03:35:26Z

[Term]
id: FYPO:0000349
name: abnormal Golgi morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of the Golgi apparatus is abnormal." [PomBase:mah]
comment: Note that an abnormal Golgi organization process may, but does not necessarily, result in abnormal Golgi morphology.
synonym: "abnormal Golgi morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "Golgi morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000353 ! abnormal endomembrane system morphology
relationship: output_of FYPO:0000806 ! abnormal Golgi organization
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000350
name: abnormal actin cytoskeleton morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of the actin cytoskeleton is abnormal." [PomBase:mah]
comment: Note that an abnormal actin cytoskeleton organization process may, but does not necessarily, result in abnormal actin cytoskeleton morphology.
synonym: "abnormal actin cytoskeleton morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "actin cytoskeleton morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000352 ! abnormal cytoskeleton morphology
relationship: output_of FYPO:0000801 ! abnormal actin cytoskeleton organization
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000351
name: abnormal cell wall morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of the fungal-type cell wall is abnormal." [PomBase:mah]
synonym: "abnormal cell wall morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "cell wall morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000027 ! abnormal cell wall
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000352
name: abnormal cytoskeleton morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of the cytoskeleton is abnormal." [PomBase:mah]
comment: Note that an abnormal cytoskeleton organization process may, but does not necessarily, result in abnormal cytoskeleton morphology.
synonym: "abnormal cytoskeleton morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "cytoskeleton morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
relationship: output_of FYPO:0000802 ! abnormal cytoskeleton organization
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000353
name: abnormal endomembrane system morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of all or part of the endomembrane system is abnormal." [PomBase:mah]
comment: Note that an abnormal endomembrane system organization process may, but does not necessarily, result in abnormal endomembrane system morphology.
synonym: "abnormal endomembrane system morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "endomembrane system morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
relationship: output_of FYPO:0000804 ! abnormal endomembrane system organization
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000354
name: abnormal endoplasmic reticulum morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of the endoplasmic reticulum is abnormal." [PomBase:mah]
comment: Note that an abnormal endoplasmic reticulum organization process may, but does not necessarily, result in abnormal endoplasmic reticulum morphology.
synonym: "abnormal endoplasmic reticulum morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "endoplasmic reticulum morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000353 ! abnormal endomembrane system morphology
relationship: output_of FYPO:0000805 ! abnormal endoplasmic reticulum organization
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000355
name: normal endoplasmic reticulum morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of the endoplasmic reticulum is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "endoplasmic reticulum morphology: normal" EXACT [SGD:phenotype_annotation]
synonym: "normal endoplasmic reticulum morphology during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001313 ! normal subcellular structure during vegetative growth
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000356
name: abnormal lipid particle morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of lipid particles is abnormal." [PomBase:mah]
comment: Note that an abnormal lipid particle organization process may, but does not necessarily, result in abnormal lipid particle morphology.
synonym: "abnormal lipid particle morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "lipid particle morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
relationship: output_of FYPO:0000808 ! abnormal lipid particle organization
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000357
name: abnormal shmoo morphology
def: "A cellular structure phenotype in which the morphology of the mating projection is abnormal." [PomBase:mah]
synonym: "abnormal conjugation tube morphology" EXACT [PomBase:mah]
synonym: "abnormal mating projection morphology" EXACT [PomBase:mah]
synonym: "mating projection morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000287 ! abnormal subcellular structure
relationship: output_of FYPO:0000568 ! abnormal shmoo formation
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000358
name: mating projection absent
def: "A cellular structure phenotype in which cells do not form mating projections." [PomBase:mah]
synonym: "absent mating projection morphology" EXACT [PomBase:mah]
synonym: "mating projection morphology: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000287 ! abnormal subcellular structure
is_a: FYPO:0001126 ! abnormal cell shape
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000359
name: abnormal mitochondrial morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of the mitochondrion is abnormal." [PomBase:mah]
comment: Note that an abnormal mitochondrion organization process may, but does not necessarily, result in abnormal mitochondrial morphology.
synonym: "abnormal mitochondrial morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "mitochondrial morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
relationship: output_of FYPO:0000809 ! abnormal mitochondrion organization
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000360
name: abnormal RNA localization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which RNA localization is abnormal." [PomBase:mah]
synonym: "abnormal RNA localisation" EXACT [PomBase:mah]
synonym: "abnormal RNA localization during vegetative growth" EXACT [PomBase:mah]
synonym: "RNA localization: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000361
name: abnormal nucleolar morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of the nucleolus is abnormal." [PomBase:mah]
comment: Note that an abnormal nucleolus organization process may, but does not necessarily, result in abnormal nucleolar morphology.
synonym: "abnormal nucleolar morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "nucleolar morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
relationship: output_of FYPO:0000814 ! abnormal nucleolus organization
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000362
name: abnormal peroxisomal morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of the peroxisome is abnormal." [PomBase:mah]
comment: Note that an abnormal peroxisome organization process may, but does not necessarily, result in abnormal peroxisome morphology.
synonym: "abnormal peroxisomal morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "peroxisomal morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
relationship: output_of FYPO:0000811 ! abnormal peroxisome organization
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000363
name: peroxisomes absent
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which cells do not contain peroxisomes." [PomBase:mah]
synonym: "absent peroxisomal morphology" EXACT [PomBase:mah]
synonym: "peroxisomal morphology: absent" EXACT [SGD:phenotype_annotation]
synonym: "peroxisomes absent during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000364
name: abnormal plasma membrane morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of the plasma membrane is abnormal." [PomBase:mah]
comment: Note that an abnormal plasma membrane organization process may, but does not necessarily, result in abnormal plasma membrane morphology.
synonym: "abnormal plasma membrane morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "plasma membrane morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
relationship: output_of FYPO:0000813 ! abnormal plasma membrane organization
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000365
name: small nucleus
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the nucleus is smaller than normal." [PomBase:mah]
synonym: "size of nucleus: decreased" EXACT [SGD:phenotype_annotation]
synonym: "small nuclei" EXACT [PomBase:vw]
synonym: "small nucleus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000062 ! abnormal nuclear morphology
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000366
name: decreased RNA localization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of RNA localization is decreased." [PomBase:mah]
synonym: "decreased RNA localisation" EXACT [PomBase:mah]
synonym: "decreased RNA localization during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced RNA localization" EXACT [PomBase:mah]
synonym: "RNA localization: decreased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000360 ! abnormal RNA localization
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000368
name: abnormal vacuolar morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of the fungal-type vacuole is abnormal." [PomBase:mah]
comment: Note that an abnormal vacuole organization process may, but does not necessarily, result in abnormal vacuolar morphology.
synonym: "abnormal vacuolar morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "vacuolar morphology: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
relationship: output_of FYPO:0000812 ! abnormal vacuole organization
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000369
name: vacuoles absent
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which cells do not contain vacuoles." [PomBase:mah]
synonym: "absent vacuolar morphology" EXACT [PomBase:mah]
synonym: "vacuolar morphology: absent" EXACT [SGD:phenotype_annotation]
synonym: "vacuoles absent during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
created_by: midori
creation_date: 2011-07-14T05:04:23Z

[Term]
id: FYPO:0000370
name: abnormal RNA modification
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which RNA modification is abnormal. All RNA modification may be abnormal, or one or more specific RNA modifications may be selectively affected." [PomBase:mah]
synonym: "abnormal RNA modification during vegetative growth" EXACT [PomBase:mah]
synonym: "RNA modification: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000294 ! RNA metabolism phenotype
is_a: FYPO:0001363 ! abnormal metabolic process during vegetative growth
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000371
name: abolished RNA modification
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which RNA modification does not occur. All RNA modification may be abolished, or one or more specific RNA modifications may be selectively affected." [PomBase:mah]
synonym: "absent RNA modification" EXACT [PomBase:mah]
synonym: "RNA modification abolished" EXACT [PomBase:mah]
synonym: "RNA modification abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "RNA modification: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000370 ! abnormal RNA modification
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000372
name: decreased RNA modification
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of RNA modification is decreased. All RNA modification may be decreased, or one or more specific RNA modifications may be selectively affected." [PomBase:mah]
synonym: "decreased RNA modification during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced RNA modification" EXACT [PomBase:mah]
synonym: "RNA modification: decreased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000370 ! abnormal RNA modification
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000373
name: decreased rate of RNA modification
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate of RNA modification is decreased." [PomBase:mah]
synonym: "decreased rate of RNA modification during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced rate of RNA modification" EXACT [PomBase:mah]
synonym: "RNA modification: decreased rate" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000370 ! abnormal RNA modification
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000374
name: increased RNA modification
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of RNA modification is increased. All RNA modification may be increased, or one or more specific RNA modifications may be selectively affected." [PomBase:mah]
synonym: "increased RNA modification during vegetative growth" EXACT [PomBase:mah]
synonym: "RNA modification: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000370 ! abnormal RNA modification
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000375
name: abolished apoptosis
def: "A cellular process phenotype in which apoptosis does not occur. Apoptosis is a form of cell death characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies." [GO:0006915, PomBase:mah]
synonym: "absent apoptosis" EXACT [PomBase:mah]
synonym: "apoptosis abolished" EXACT [PomBase:mah]
synonym: "apoptosis: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000629 ! abnormal apoptosis
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000376
name: decreased apoptosis
def: "A cellular process phenotype in which the occurrence of apoptosis is decreased. Apoptosis is a form of cell death characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies." [GO:0006915, PomBase:mah]
synonym: "apoptosis: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced apoptosis" EXACT [PomBase:mah]
is_a: FYPO:0000629 ! abnormal apoptosis
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000377
name: increased apoptosis
def: "A cellular process phenotype in which the occurrence of apoptosis is increased. Apoptosis is a form of cell death characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies." [GO:0006915, PomBase:mah]
synonym: "apoptosis: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000629 ! abnormal apoptosis
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000378
name: normal apoptosis
def: "A cellular process phenotype in which apoptosis is normal (i.e. indistinguishable from wild type). Apoptosis is a form of cell death characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies." [GO:0006915, PomBase:mah]
synonym: "apoptosis: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000380
name: abolished autophagy
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which autophagy does not occur." [PomBase:mah]
synonym: "absent autophagy" EXACT [PomBase:mah]
synonym: "autophagy abolished" EXACT [PomBase:mah]
synonym: "autophagy abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "autophagy: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000163 ! abnormal autophagy
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000381
name: decreased autophagy
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of autophagy is decreased." [PomBase:mah]
synonym: "autophagy: decreased" EXACT [SGD:phenotype_annotation]
synonym: "decreased autophagy during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced autophagy" EXACT [PomBase:mah]
is_a: FYPO:0000163 ! abnormal autophagy
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000382
name: decreased rate of autophagy
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate of autophagy is decreased." [PomBase:mah]
synonym: "autophagy: decreased rate" EXACT [SGD:phenotype_annotation]
synonym: "decreased rate of autophagy during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced rate of autophagy" EXACT [PomBase:mah]
is_a: FYPO:0000163 ! abnormal autophagy
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000383
name: delayed autophagy
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which autophagy is delayed." [PomBase:mah]
synonym: "autophagy: delayed" EXACT [SGD:phenotype_annotation]
synonym: "delayed autophagy during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000163 ! abnormal autophagy
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000384
name: increased autophagy
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of autophagy is increased." [PomBase:mah]
synonym: "autophagy: increased" EXACT [SGD:phenotype_annotation]
synonym: "increased autophagy during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000163 ! abnormal autophagy
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000385
name: normal autophagy
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which autophagy is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "autophagy: normal" EXACT [SGD:phenotype_annotation]
synonym: "normal autophagy during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000859 ! normal metabolic process
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000386
name: abolished biofilm formation
def: "A cellular process phenotype in which biofilm formation does not occur." [PomBase:mah]
synonym: "absent biofilm formation" EXACT [PomBase:mah]
synonym: "biofilm formation abolished" EXACT [PomBase:mah]
synonym: "biofilm formation: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000630 ! abnormal biofilm formation
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000387
name: decreased biofilm formation
def: "A cellular process phenotype in which the occurrence of biofilm formation is decreased." [PomBase:mah]
synonym: "biofilm formation: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced biofilm formation" EXACT [PomBase:mah]
is_a: FYPO:0000630 ! abnormal biofilm formation
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000388
name: increased biofilm formation
def: "A cellular process phenotype in which the occurrence of biofilm formation is increased." [PomBase:mah]
synonym: "biofilm formation: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000630 ! abnormal biofilm formation
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000389
name: mitotic cell cycle arrest at START
def: "A cellular process phenotype in which traversing the start control point of the mitotic cell cycle is arrested." [PomBase:mah]
synonym: "cell cycle passage through START: arrested" EXACT [SGD:phenotype_annotation]
synonym: "mitotic cell cycle arrest at START during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000148 ! abnormal regulation of mitotic cell cycle
is_a: FYPO:0001028 ! abnormal cell cycle arrest in mitotic interphase
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000390
name: advanced passage through START of mitotic cell cycle
def: "A cellular process phenotype in which traversing the start control point of the mitotic cell cycle takes place earlier than normal." [PomBase:mah]
synonym: "advanced mitotic cell cycle passage through START" EXACT [PomBase:mah]
synonym: "advanced passage through START of mitotic cell cycle during vegetative growth" EXACT [PomBase:mah]
synonym: "cell cycle passage through START: increased rate" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0000148 ! abnormal regulation of mitotic cell cycle
is_a: FYPO:0000827 ! advanced cell cycle progression
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000391
name: normal passage through START of mitotic cell cycle
def: "A cellular process phenotype in which traversing the start control point of the mitotic cell cycle is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "cell cycle passage through START: normal" EXACT [SGD:phenotype_annotation]
synonym: "normal mitotic cell cycle passage through START" EXACT [PomBase:mah]
synonym: "normal passage through START of mitotic cell cycle during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001928 ! normal regulation of mitotic cell cycle
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000392
name: cell cycle arrest at mitotic metaphase/anaphase transition
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested at the metaphase/anaphase transition." [PomBase:mah]
synonym: "abnormal cell cycle arrest at mitotic metaphase/anaphase transition" EXACT [PomBase:mah]
synonym: "cell cycle arrest at mitotic metaphase/anaphase transition during vegetative growth" EXACT [PomBase:mah]
synonym: "cell cycle passage through the metaphase-anaphase transition: arrested" EXACT [SGD:phenotype_annotation]
synonym: "mitotic metaphase/anaphase arrest" EXACT [PomBase:mah]
is_a: FYPO:0000608 ! mitotic cell cycle arrest in M phase
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000394
name: abnormal cell cycle progression through mitotic G1/S phase transition
def: "A cellular process phenotype in which the G1/S transition of the mitotic cell cycle is abnormal." [PomBase:mah]
synonym: "abnormal cell cycle progression through mitotic G1/S phase transition during vegetative growth" EXACT [PomBase:mah]
synonym: "cell cycle progression through the G1/S phase transition: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000059 ! abnormal mitotic cell cycle progression
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000395
name: mitotic cell cycle arrest at G1/S phase transition
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested at the G1/S transition." [PomBase:mah]
synonym: "abnormal mitotic cell cycle arrest at G1/S phase transition" EXACT [PomBase:mah]
synonym: "cell cycle progression through the G1/S phase transition: arrested" EXACT [SGD:phenotype_annotation]
synonym: "mitotic cell cycle arrest at G1/S phase transition during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic G1/S phase arrest" EXACT [PomBase:mah]
is_a: FYPO:0000394 ! abnormal cell cycle progression through mitotic G1/S phase transition
is_a: FYPO:0001028 ! abnormal cell cycle arrest in mitotic interphase
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000397
name: decreased duration of cell cycle progression through mitotic G1/S phase transition
def: "A cellular process phenotype in which the duration of progression through the G1/S transition of the mitotic cell cycle is shorter than normal." [PomBase:mah]
synonym: "cell cycle progression through the G1/S phase transition: increased rate" RELATED [SGD:phenotype_annotation]
synonym: "decreased duration of cell cycle progression through mitotic G1/S phase transition during vegetative growth" EXACT [PomBase:mah]
synonym: "increased rate of cell cycle progression through mitotic G1/S phase transition" RELATED [PomBase:mah]
synonym: "reduced duration of cell cycle progression through mitotic G1/S phase transition" EXACT [PomBase:mah]
is_a: FYPO:0000394 ! abnormal cell cycle progression through mitotic G1/S phase transition
is_a: FYPO:0000410 ! decreased duration of cell cycle phase
created_by: midori
creation_date: 2011-07-14T06:06:09Z

[Term]
id: FYPO:0000398
name: premature cell cycle progression through mitotic G1/S phase transition
def: "A cellular process phenotype in which progression through the G1/S transition of the mitotic cell cycle is premature." [PomBase:mah]
synonym: "cell cycle progression through the G1/S phase transition: premature" EXACT [SGD:phenotype_annotation]
synonym: "premature cell cycle progression through mitotic G1/S phase transition during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000394 ! abnormal cell cycle progression through mitotic G1/S phase transition
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000399
name: abnormal cell cycle progression through mitotic G2/M phase transition
def: "A cellular process phenotype in which the G2/M transition of the mitotic cell cycle is abnormal." [PomBase:mah]
synonym: "abnormal cell cycle progression through mitotic G2/M phase transition during vegetative growth" EXACT [PomBase:mah]
synonym: "cell cycle progression through the G2/M phase transition: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000059 ! abnormal mitotic cell cycle progression
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000400
name: cell cycle arrest at mitotic G2/M phase transition
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested at the G2/M transition." [PomBase:mah]
synonym: "abnormal cell cycle arrest at mitotic G2/M phase transition" EXACT [PomBase:mah]
synonym: "cell cycle arrest at mitotic G2/M phase transition during vegetative growth" EXACT [PomBase:mah]
synonym: "cell cycle progression through the G2/M phase transition: arrested" EXACT [SGD:phenotype_annotation]
synonym: "mitotic G2/M phase arrest" EXACT [PomBase:mah]
is_a: FYPO:0000399 ! abnormal cell cycle progression through mitotic G2/M phase transition
is_a: FYPO:0001028 ! abnormal cell cycle arrest in mitotic interphase
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000402
name: increased cell cycle progression through mitotic G2/M phase transition
def: "A cellular process phenotype in which the occurrence of progression through the G2/M transition of the mitotic cell cycle is increased." [PomBase:mah]
synonym: "cell cycle progression through the G2/M phase transition: increased" EXACT [SGD:phenotype_annotation]
synonym: "increased cell cycle progression through mitotic G2/M phase transition during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000399 ! abnormal cell cycle progression through mitotic G2/M phase transition
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000403
name: increased duration of cell cycle progression through mitotic G2/M phase transition
def: "A cellular process phenotype in which the duration of progression through the G2/M transition of the mitotic cell cycle is increased." [PomBase:mah]
synonym: "cell cycle progression through the G2/M phase transition: increased duration" EXACT [SGD:phenotype_annotation]
synonym: "increased duration of cell cycle progression through mitotic G2/M phase transition during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000399 ! abnormal cell cycle progression through mitotic G2/M phase transition
is_a: FYPO:0000408 ! increased duration of cell cycle phase
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000404
name: decreased duration of cell cycle progression through mitotic G2/M phase transition
def: "A cellular process phenotype in which the duration of progression through the G2/M transition of the mitotic cell cycle is shorter than normal." [PomBase:mah]
synonym: "cell cycle progression through the G2/M phase transition: increased rate" EXACT [SGD:phenotype_annotation]
synonym: "decreased duration of cell cycle progression through mitotic G2/M phase transition during vegetative growth" EXACT [PomBase:mah]
synonym: "increased rate of cell cycle progression through mitotic G2/M phase transition" RELATED [PomBase:mah]
synonym: "reduced duration of cell cycle progression through mitotic G2/M phase transition" EXACT [PomBase:mah]
is_a: FYPO:0000399 ! abnormal cell cycle progression through mitotic G2/M phase transition
is_a: FYPO:0000410 ! decreased duration of cell cycle phase
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000405
name: normal cell cycle progression through mitotic G2/M phase transition
def: "A cellular process phenotype in which the G2/M transition of the mitotic cell cycle is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "cell cycle progression through the G2/M phase transition: normal" EXACT [SGD:phenotype_annotation]
synonym: "normal cell cycle progression through mitotic G2/M phase transition during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000411 ! normal cell cycle progression
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000407
name: abnormally arrested cell cycle progression
def: "A cellular process phenotype in which cell cycle progression is arrested under conditions where arrest does not normally occur." [PomBase:mah]
comment: Note that this term should be used only for cell cycle arrest that occurs in mutants but not in wild type cells. For phenotypes affecting cell cycle that normally occurs, e.g. in response to mating pheromone, see 'normally arrested cell cycle progression' (FYPO:0001025), 'abnormal occurrence of normal cell cycle arrest' (FYPO:0001026), and their child terms.
synonym: "abnormal cell cycle arrest" EXACT [PomBase:mah]
synonym: "abnormally arrested cell cycle progression during vegetative growth" EXACT [PomBase:mah]
synonym: "cell cycle progression: arrested" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000011 ! abnormal cell cycle progression
is_a: FYPO:0001024 ! cell cycle arrest phenotype
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000408
name: increased duration of cell cycle phase
def: "A cellular process phenotype in which the duration of one or more cell cycle phases is longer than normal." [PomBase:mah]
synonym: "cell cycle progression: decreased rate" RELATED [SGD:phenotype_annotation]
synonym: "decreased rate of cell cycle progression" RELATED [PomBase:mah]
synonym: "increased duration of cell cycle phase during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced rate of cell cycle progression" RELATED [PomBase:mah]
is_a: FYPO:0000011 ! abnormal cell cycle progression
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000409
name: delayed cell cycle phase transition
def: "A cellular process phenotype in which one or more cell cycle phase transitions takes place later than normal." [PomBase:mah]
synonym: "cell cycle progression: delayed" EXACT [SGD:phenotype_annotation]
synonym: "delayed cell cycle phase transition during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000011 ! abnormal cell cycle progression
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000410
name: decreased duration of cell cycle phase
def: "A cellular process phenotype in which the duration of one or more cell cycle phases is shorter than normal." [PomBase:mah]
synonym: "cell cycle progression: increased rate" RELATED [SGD:phenotype_annotation]
synonym: "decreased duration of cell cycle phase during vegetative growth" EXACT [PomBase:mah]
synonym: "increased rate of cell cycle progression" RELATED [PomBase:mah]
synonym: "reduced duration of cell cycle phase" EXACT [PomBase:mah]
is_a: FYPO:0000011 ! abnormal cell cycle progression
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000411
name: normal cell cycle progression
def: "A cellular process phenotype in which cell cycle progression is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "cell cycle progression: normal" EXACT [SGD:phenotype_annotation]
synonym: "normal cell cycle progression during vegetative growth" EXACT [PomBase:mah]
synonym: "normal cell-division cycle" EXACT [GO:0007049, PomBase:mah]
is_a: FYPO:0000631 ! cell cycle phenotype
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000412
name: abnormal cell fusion
def: "A cellular process phenotype in which plasma membrane fusion is abnormal." [PomBase:mah]
synonym: "cell fusion: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001013 ! abnormal membrane organization
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000413
name: abolished cell fusion
def: "A cellular process phenotype in which plasma membrane fusion does not occur." [PomBase:mah]
synonym: "absent cell fusion" EXACT [PomBase:mah]
synonym: "cell fusion abolished" EXACT [PomBase:mah]
synonym: "cell fusion: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000412 ! abnormal cell fusion
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000414
name: decreased cell fusion
def: "A cellular process phenotype in which the occurrence of plasma membrane fusion is decreased." [PomBase:mah]
synonym: "cell fusion: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced cell fusion" EXACT [PomBase:mah]
is_a: FYPO:0000412 ! abnormal cell fusion
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000415
name: decreased mitotic sister chromatid segregation
def: "A cellular process phenotype in which the occurrence of mitotic sister chromatid segregation is decreased." [PomBase:mah]
synonym: "chromosome segregation: decreased" BROAD [SGD:phenotype_annotation]
synonym: "decreased chromosome segregation during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased mitotic chromosome segregation" EXACT [GO:0000070]
synonym: "reduced mitotic sister chromatid segregation" EXACT [PomBase:mah]
is_a: FYPO:0000141 ! abnormal mitotic sister chromatid segregation
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000416
name: premature mitotic sister chromatid segregation
def: "A cellular process phenotype in which mitotic sister chromatid segregation occurs prematurely." [PomBase:mah]
synonym: "chromosome segregation: premature" BROAD [SGD:phenotype_annotation]
synonym: "premature chromosome segregation during vegetative growth" EXACT [PomBase:mah]
synonym: "premature mitotic chromosome segregation" EXACT [GO:0000070]
is_a: FYPO:0000141 ! abnormal mitotic sister chromatid segregation
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000417
name: abolished cytokinesis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell cycle cytokinesis does not occur." [PomBase:mah]
synonym: "absent cytokinesis" EXACT [PomBase:mah]
synonym: "cytokinesis abolished" EXACT [PomBase:mah]
synonym: "cytokinesis abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "cytokinesis: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000032 ! abnormal cytokinesis
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000418
name: decreased cytokinesis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of cell cycle cytokinesis is decreased." [PomBase:mah]
synonym: "cytokinesis: decreased" EXACT [SGD:phenotype_annotation]
synonym: "decreased cytokinesis during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced cytokinesis" EXACT [PomBase:mah]
is_a: FYPO:0000032 ! abnormal cytokinesis
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000419
name: decreased rate of cytokinesis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate of cell cycle cytokinesis is decreased." [PomBase:mah]
synonym: "cytokinesis: decreased rate" EXACT [SGD:phenotype_annotation]
synonym: "decreased rate of cytokinesis during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced rate of cytokinesis" EXACT [PomBase:mah]
is_a: FYPO:0000032 ! abnormal cytokinesis
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000420
name: delayed cytokinesis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell cycle cytokinesis is delayed." [PomBase:mah]
synonym: "cytokinesis: delayed" EXACT [SGD:phenotype_annotation]
synonym: "delayed cytokinesis during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000032 ! abnormal cytokinesis
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000421
name: endocytosis abolished
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which endocytosis does not occur." [PomBase:mah]
synonym: "abolished actin-mediated endocytosis" EXACT [PomBase:vw]
synonym: "absent endocytosis" EXACT [PomBase:mah]
synonym: "endocytosis abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "endocytosis: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000034 ! abnormal endocytosis
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000422
name: decreased endocytosis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of endocytosis is decreased." [PomBase:mah]
synonym: "decreased endocytosis during vegetative growth" EXACT [PomBase:mah]
synonym: "endocytosis: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced actin-mediated endocytosis" EXACT [PomBase:vw]
synonym: "reduced endocytosis" EXACT [PomBase:mah]
is_a: FYPO:0000034 ! abnormal endocytosis
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000423
name: decreased rate of endocytosis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate of endocytosis is decreased." [PomBase:mah]
synonym: "decreased rate of actin-mediated endocytosis" EXACT [PomBase:vw]
synonym: "decreased rate of endocytosis during vegetative growth" EXACT [PomBase:mah]
synonym: "endocytosis: decreased rate" EXACT [SGD:phenotype_annotation]
synonym: "reduced rate of endocytosis" EXACT [PomBase:mah]
is_a: FYPO:0000034 ! abnormal endocytosis
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000424
name: delayed endocytosis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which endocytosis is delayed." [PomBase:mah]
synonym: "delayed actin-mediated endocytosis" EXACT [PomBase:vw]
synonym: "delayed endocytosis during vegetative growth" EXACT [PomBase:mah]
synonym: "endocytosis: delayed" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000034 ! abnormal endocytosis
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000425
name: increased endocytosis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of endocytosis is increased." [PomBase:mah]
synonym: "endocytosis: increased" EXACT [SGD:phenotype_annotation]
synonym: "increased actin-mediated endocytosis" EXACT [PomBase:vw]
synonym: "increased endocytosis during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000034 ! abnormal endocytosis
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000426
name: normal endocytosis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which endocytosis is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "endocytosis: normal" EXACT [SGD:phenotype_annotation]
synonym: "normal endocytosis during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001071 ! normal transport
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000427
name: abnormal G1 to G0 transition
def: "A cellular process phenotype in which the G1 to G0 transition is abnormal." [PomBase:mah]
synonym: "abnormal cell cycle quiescence" RELATED [GO:0070314, PomBase:mah]
synonym: "abnormal establishment of cell quiescence" EXACT [GO:0070314, PomBase:mah]
synonym: "abnormal G1/G0 transition" EXACT [GO:0070314, PomBase:mah]
is_a: FYPO:0000145 ! regulation phenotype
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000428
name: abolished entry into G0
def: "A cellular process phenotype in which the G1 to G0 transition does not occur." [PomBase:mah]
synonym: "cell cycle quiescence abolished" RELATED [GO:0070314, PomBase:mah]
synonym: "entry into G0 abolished" EXACT [PomBase:mah]
synonym: "establishment of cell quiescence abolished" EXACT [GO:0070314, PomBase:mah]
synonym: "G1/G0 transition abolished" EXACT [GO:0070314, PomBase:mah]
is_a: FYPO:0000427 ! abnormal G1 to G0 transition
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000429
name: delayed G0 to G1 transition
def: "A cellular process phenotype in which the G0 to G1 transition is abnormal." [PomBase:mah]
synonym: "delayed cell cycle quiescence" RELATED [GO:0070314, PomBase:mah]
synonym: "delayed establishment of cell quiescence" EXACT [GO:0070314, PomBase:mah]
synonym: "delayed G1/G0 transition" EXACT [GO:0070314, PomBase:mah]
synonym: "slow cell growth following nitrogen starvation" RELATED [PomBase:al]
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000430
name: abnormal fermentation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which fermentation is abnormal." [PomBase:mah]
synonym: "abnormal fermentation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal fermentative metabolism" EXACT [PomBase:mah]
synonym: "fermentative metabolism: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001363 ! abnormal metabolic process during vegetative growth
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000431
name: abolished fermentation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which fermentation does not occur." [PomBase:mah]
synonym: "absent fermentative metabolism" EXACT [PomBase:mah]
synonym: "fermentation abolished" EXACT [PomBase:mah]
synonym: "fermentation abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "fermentative metabolism abolished" EXACT [PomBase:mah]
synonym: "fermentative metabolism: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000430 ! abnormal fermentation
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000432
name: decreased fermentation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of fermentation is decreased." [PomBase:mah]
synonym: "decreased fermentation during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased fermentative metabolism" EXACT [PomBase:mah]
synonym: "fermentative metabolism: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced fermentation" EXACT [PomBase:mah]
is_a: FYPO:0000430 ! abnormal fermentation
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000433
name: increased fermentation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of fermentation is increased." [PomBase:mah]
synonym: "fermentative metabolism: increased" EXACT [SGD:phenotype_annotation]
synonym: "increased fermentation during vegetative growth" EXACT [PomBase:mah]
synonym: "increased fermentative metabolism" EXACT [PomBase:mah]
is_a: FYPO:0000430 ! abnormal fermentation
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000434
name: normal fermentation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which fermentation is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "fermentative metabolism: normal" EXACT [SGD:phenotype_annotation]
synonym: "normal fermentation during vegetative growth" EXACT [PomBase:mah]
synonym: "normal fermentative metabolism" EXACT [PomBase:mah]
is_a: FYPO:0000859 ! normal metabolic process
created_by: midori
creation_date: 2011-07-14T06:45:37Z

[Term]
id: FYPO:0000440
name: sensitive to antimycin A
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to antimycin A. Cells stop growing (and may die) at a concentration of antimycin A that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to antimycin A" EXACT [PomBase:mah]
synonym: "sensitive to antimycin A during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-08-03T04:41:43Z

[Term]
id: FYPO:0000441
name: resistance to antimycin A
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of antimycin than normal." [PomBase:mah]
synonym: "resistance to antimycin A during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to antimycin A" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-08-03T04:41:43Z

[Term]
id: FYPO:0000442
name: decreased cell population growth on glycerol/ethanol carbon source
def: "A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing glycerol and ethanol as the carbon sources." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "decreased cell growth on glycerol plus ethanol" EXACT [PomBase:mah]
synonym: "decreased growth on glycerol/ethanol carbon source" BROAD [PomBase:mah]
synonym: "decreased vegetative cell growth on glycerol/ethanol carbon source" EXACT [PomBase:mah]
synonym: "reduced cell growth on glycerol/ethanol carbon source" RELATED [PomBase:mah]
synonym: "slow cell growth on glycerol/ethanol carbon source" NARROW [PomBase:mah]
is_a: FYPO:0000684 ! decreased cell population growth on glycerol carbon source
created_by: midori
creation_date: 2011-08-03T05:18:32Z

[Term]
id: FYPO:0000443
name: abnormal protein localization during vegetative growth
def: "A cell phenotype that affects the localization of a protein in a cell in the vegetative growth phase of the life cycle. A protein may be observed in a place where it is not normally found, absent from a place where it is normally found, or both." [PomBase:mah]
comment: We recommend using one of the more specific terms instead of annotating to this term directly, if possible. If this term is used, we recommend noting which protein(s) were used in the assay.
synonym: "abnormal cellular protein localisation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal cellular protein localization during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal protein localisation during vegetative growth" EXACT [PomBase:mah]
synonym: "protein/peptide distribution: abnormal" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0001337 ! localization phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
is_a: FYPO:0001370 ! abnormal protein localization
created_by: midori
creation_date: 2011-08-04T04:19:46Z

[Term]
id: FYPO:0000444
name: cell cycle arrest with replicated DNA
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested when cells have replicated genomic DNA." [PomBase:mah]
comment: Arrest with replicated DNA may occur between late S and G2/M; if only DNA content is measured, the arrest point cannot be determined with greater precision.
synonym: "cell cycle arrest with 2C DNA content" NARROW [PomBase:mah]
synonym: "cell cycle arrest with replicated DNA during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000407 ! abnormally arrested cell cycle progression
created_by: midori
creation_date: 2011-08-12T02:03:05Z

[Term]
id: FYPO:0000445
name: cell cycle arrest in mitotic G1 phase
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested in G1 phase." [PomBase:mah]
comment: Note that this term should be used only for cell cycle arrest that occurs in mutants. For phenotypes affecting the G1 cell cycle that normally occurs in response to mating pheromone, see 'abnormal cell cycle arrest in response to pheromone' (FYPO:0000530) and its child terms.
synonym: "cell cycle arrest in mitotic G1 phase during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in G1 phase: arrested" EXACT [SGD:phenotype_annotation]
synonym: "mitotic G1 phase arrest" EXACT [PomBase:mah]
is_a: FYPO:0000837 ! cell cycle arrest in mitotic interphase
is_a: FYPO:0001331 ! cellular process phenotype during vegetative growth
created_by: midori
creation_date: 2011-08-12T02:07:59Z

[Term]
id: FYPO:0000446
name: cell cycle arrest in mitotic G2 phase
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested in G2 phase." [PomBase:mah]
synonym: "cell cycle arrest in mitotic G2 phase during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in G2 phase: arrested" EXACT [SGD:phenotype_annotation]
synonym: "mitotic G2 phase arrest" EXACT [PomBase:mah]
is_a: FYPO:0000837 ! cell cycle arrest in mitotic interphase
is_a: FYPO:0001331 ! cellular process phenotype during vegetative growth
created_by: midori
creation_date: 2011-08-12T02:11:06Z

[Term]
id: FYPO:0000447
name: abnormal protein complex assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which any process of protein complex assembly at the cellular level is abnormal." [PomBase:mah]
synonym: "abnormal protein complex assembly during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001354 ! abnormal cellular component assembly during vegetative growth
created_by: midori
creation_date: 2011-08-12T02:26:26Z

[Term]
id: FYPO:0000448
name: abnormal MCM complex assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which MCM complex assembly is abnormal." [PomBase:mah]
synonym: "abnormal MCM complex assembly during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000447 ! abnormal protein complex assembly
created_by: midori
creation_date: 2011-08-12T02:27:22Z

[Term]
id: FYPO:0000449
name: abnormal protein localization to centromere
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the centromere of a chromosome is abnormal." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found at the centromere and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to centromere" EXACT [PomBase:mah]
synonym: "abnormal protein localisation to chromosome, centromeric region" EXACT [GO:0071459, PomBase:mah]
synonym: "abnormal protein localization to centromere during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal protein localization to chromosome, centric region" EXACT [GO:0071459, PomBase:mah]
synonym: "abnormal protein localization to chromosome, centromeric region" EXACT [GO:0071459, PomBase:mah]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
created_by: midori
creation_date: 2011-08-12T02:29:38Z

[Term]
id: FYPO:0000450
name: decreased protein localization to centromere
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the centromere of a chromosome is decreased." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "decreased protein localisation to centromere" EXACT [PomBase:mah]
synonym: "decreased protein localisation to chromosome, centromeric region" EXACT [GO:0071459, PomBase:mah]
synonym: "decreased protein localization to centromere during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased protein localization to chromosome, centric region" EXACT [GO:0071459, PomBase:mah]
synonym: "decreased protein localization to chromosome, centromeric region" EXACT [GO:0071459, PomBase:mah]
synonym: "reduced protein localization to centromere" EXACT [PomBase:mah]
is_a: FYPO:0000449 ! abnormal protein localization to centromere
created_by: midori
creation_date: 2011-08-12T02:33:53Z

[Term]
id: FYPO:0000451
name: increased protein localization to centromere
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the centromere of a chromosome is increased." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "increased protein localisation to centromere" EXACT [PomBase:mah]
synonym: "increased protein localisation to chromosome, centromeric region" EXACT [GO:0071459, PomBase:mah]
synonym: "increased protein localization to centromere during vegetative growth" EXACT [PomBase:mah]
synonym: "increased protein localization to chromosome, centric region" EXACT [GO:0071459, PomBase:mah]
synonym: "increased protein localization to chromosome, centromeric region" EXACT [GO:0071459, PomBase:mah]
is_a: FYPO:0000449 ! abnormal protein localization to centromere
created_by: midori
creation_date: 2011-08-12T02:34:10Z

[Term]
id: FYPO:0000452
name: abnormal protein localization to chromatin during vegetative growth
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found associated with chromatin and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to chromatin during vegetative growth" EXACT [GO:0071168, PomBase:mah]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
is_a: FYPO:0001679 ! abnormal protein localization to chromatin
created_by: midori
creation_date: 2011-08-12T02:35:06Z

[Term]
id: FYPO:0000453
name: DNA content decreased
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell contains less DNA than normal." [PomBase:mah]
synonym: "DNA content decreased during vegetative growth" EXACT [PomBase:mah]
synonym: "DNA content reduced" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2011-08-12T02:37:29Z

[Term]
id: FYPO:0000454
name: inviable mixed population including long and short cells
def: "A mixed population phenotype in which a microcolony forms, all cells in the population are inviable, and some cells are longer and other cells smaller than normal." [PomBase:mah]
synonym: "essential; mixed population including long and short cells" RELATED [PomBase:mah]
is_a: FYPO:0000299 ! microcolony formation
is_a: FYPO:0000317 ! mixed population
relationship: includes_cells_with_phenotype FYPO:0000017 ! elongated cell
relationship: includes_cells_with_phenotype FYPO:0000023 ! small cell
created_by: midori
creation_date: 2011-08-12T02:39:05Z

[Term]
id: FYPO:0000455
name: accumulation of double-strand break sites
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites of double-strand breaks in DNA is greater than normal." [PomBase:mah]
comment: Because Rad22 often accumulates at double-strand breaks, consider also annotating to 'increased number of Rad22 foci' (FYPO:0000972).
synonym: "accumulation of DNA damage foci" EXACT [PomBase:mah]
synonym: "accumulation of double-strand break sites during vegetative growth" EXACT [PomBase:mah]
synonym: "increased number of DNA damage foci" EXACT [PomBase:mah]
synonym: "increased number of double-strand break sites" EXACT [PomBase:mah]
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2011-08-12T02:44:35Z

[Term]
id: FYPO:0000456
name: abnormal histone acetylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone acetylation is abnormal." [PomBase:mah]
synonym: "abnormal histone acetylation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000330 ! abnormal histone modification
created_by: midori
creation_date: 2011-08-12T02:55:54Z

[Term]
id: FYPO:0000457
name: abnormal histone methylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone methylation is abnormal. All histone methylation may be affected, or methylation of specific sites on specific histones may be altered." [PomBase:mah]
synonym: "abnormal histone methylation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000330 ! abnormal histone modification
created_by: midori
creation_date: 2011-08-12T02:56:38Z

[Term]
id: FYPO:0000458
name: abnormal histone H3-K9 methylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 is abnormal." [PomBase:mah]
synonym: "abnormal histone H3 K9 methylation" EXACT [GO:0051567, PomBase:mah]
synonym: "abnormal histone H3-K9 methylation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal histone H3K9me" EXACT [GO:0051567, PomBase:mah]
synonym: "abnormal histone lysine H3 K9 methylation" EXACT [GO:0051567, PomBase:mah]
is_a: FYPO:0000457 ! abnormal histone methylation
created_by: midori
creation_date: 2011-08-12T02:57:59Z

[Term]
id: FYPO:0000459
name: abnormal mitotic centromeric sister chromatid cohesion
def: "A cellular process phenotype in which cohesion between centromeres of sister chromatids is abnormal during mitosis." [PomBase:mah]
synonym: "abnormal centromeric sister chromatid cohesion during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal mitotic sister chromatid cohesion, centromeric" EXACT [GO:0071962, PomBase:mah]
synonym: "abnormal sister chromatid cohesion at centromere during mitosis" EXACT [PomBase:mah]
is_a: FYPO:0000641 ! abnormal chromosome organization
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
relationship: part_of FYPO:0000141 ! abnormal mitotic sister chromatid segregation
created_by: midori
creation_date: 2011-08-12T03:12:26Z

[Term]
id: FYPO:0000460
name: decreased mitotic centromeric sister chromatid cohesion
def: "A cellular process phenotype in which cohesion between centromeres of sister chromatids is decreased during mitosis." [PomBase:mah]
synonym: "decreased centromeric sister chromatid cohesion during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased mitotic sister chromatid cohesion, centromeric" EXACT [GO:0071962, PomBase:mah]
synonym: "decreased sister chromatid cohesion at centromere during mitosis" EXACT [PomBase:mah]
synonym: "reduced mitotic centromeric sister chromatid cohesion" EXACT [PomBase:mah]
is_a: FYPO:0000459 ! abnormal mitotic centromeric sister chromatid cohesion
created_by: midori
creation_date: 2011-08-12T03:14:23Z

[Term]
id: FYPO:0000461
name: flocculation abolished
def: "A cellular process phenotype in which flocculation does not occur." [PomBase:mah]
synonym: "absent flocculation" EXACT [PomBase:mah]
synonym: "flocculation: absent" EXACT [SGD:phenotype_annotation]
is_obsolete: true
created_by: midori
creation_date: 2011-08-12T04:05:34Z

[Term]
id: FYPO:0000463
name: normal flocculation
def: "A cellular process phenotype in which flocculation is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "flocculation: normal" EXACT [SGD:phenotype_annotation]
is_obsolete: true
created_by: midori
creation_date: 2011-08-12T04:05:34Z

[Term]
id: FYPO:0000464
name: decreased intracellular transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of intracellular transport is decreased." [PomBase:mah]
synonym: "decreased intracellular transport during vegetative growth" EXACT [PomBase:mah]
synonym: "intracellular transport: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced intracellular transport" EXACT [PomBase:mah]
is_a: FYPO:0001336 ! transport phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
is_a: FYPO:0001720 ! abnormal transport
created_by: midori
creation_date: 2011-08-12T04:05:34Z

[Term]
id: FYPO:0000466
name: decreased invasive growth
def: "A cellular process phenotype in which the occurrence of invasive growth is decreased." [PomBase:mah]
comment: This term was made obsolete because it is not required to describe fission yeast.
synonym: "invasive growth: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced invasive growth" EXACT [PomBase:mah]
is_obsolete: true
consider: FYPO:0000552
created_by: midori
creation_date: 2011-08-12T04:05:34Z

[Term]
id: FYPO:0000467
name: increased invasive growth
def: "A cellular process phenotype in which the occurrence of invasive growth is increased." [PomBase:mah]
comment: This term was made obsolete because it is not required to describe fission yeast.
synonym: "invasive growth: increased" EXACT [SGD:phenotype_annotation]
is_obsolete: true
consider: FYPO:0000553
created_by: midori
creation_date: 2011-08-12T04:05:34Z

[Term]
id: FYPO:0000468
name: abnormal mating type switching
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mating type switching is abnormal." [PomBase:mah]
synonym: "abnormal mating type switching during vegetative growth" EXACT [PomBase:mah]
synonym: "mating type switching: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000679 ! developmental process phenotype
is_a: FYPO:0001346 ! DNA metabolism phenotype during vegetative growth
is_a: FYPO:0001363 ! abnormal metabolic process during vegetative growth
created_by: midori
creation_date: 2011-08-12T04:05:34Z

[Term]
id: FYPO:0000469
name: abolished mating type switching
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mating type switching does not occur." [PomBase:mah]
synonym: "absent mating type switching" EXACT [PomBase:mah]
synonym: "mating type switching abolished" EXACT [PomBase:mah]
synonym: "mating type switching abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "mating type switching: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000468 ! abnormal mating type switching
created_by: midori
creation_date: 2011-08-12T04:05:34Z

[Term]
id: FYPO:0000470
name: decreased mating type switching
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mating type switching is decreased." [PomBase:mah]
synonym: "decreased mating type switching during vegetative growth" EXACT [PomBase:mah]
synonym: "mating type switching: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced mating type switching" EXACT [PomBase:mah]
is_a: FYPO:0000468 ! abnormal mating type switching
created_by: midori
creation_date: 2011-08-12T04:05:34Z

[Term]
id: FYPO:0000471
name: increased mating type switching
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mating type switching is increased." [PomBase:mah]
synonym: "increased mating type switching during vegetative growth" EXACT [PomBase:mah]
synonym: "mating type switching: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000468 ! abnormal mating type switching
created_by: midori
creation_date: 2011-08-12T04:05:34Z

[Term]
id: FYPO:0000472
name: normal mating type switching
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mating type switching is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "mating type switching: normal" EXACT [SGD:phenotype_annotation]
synonym: "normal mating type switching during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000679 ! developmental process phenotype
is_a: FYPO:0000859 ! normal metabolic process
is_a: FYPO:0001346 ! DNA metabolism phenotype during vegetative growth
created_by: midori
creation_date: 2011-08-12T04:05:34Z

[Term]
id: FYPO:0000473
name: increased mitotic recombination
def: "A cellular process phenotype in which the occurrence of mitotic recombination is increased." [PomBase:mah]
synonym: "increased mitotic recombination during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic recombination: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000481 ! abnormal mitotic recombination
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000474
name: abolished meiosis
def: "A cellular process phenotype in which meiosis does not occur." [PomBase:mah]
synonym: "absent meiosis" EXACT [PomBase:mah]
synonym: "meiosis abolished" EXACT [PomBase:mah]
synonym: "meiosis: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000051 ! abnormal meiosis
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000475
name: arrested meiosis
def: "A cellular process phenotype in which meiosis is arrested." [PomBase:mah]
synonym: "meiosis: arrested" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000051 ! abnormal meiosis
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000476
name: decreased meiosis
def: "A cellular process phenotype in which the occurrence of meiosis is decreased." [PomBase:mah]
synonym: "meiosis: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced meiosis" EXACT [PomBase:mah]
is_a: FYPO:0000051 ! abnormal meiosis
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000477
name: delayed meiosis
def: "A cellular process phenotype in which meiosis is delayed." [PomBase:mah]
synonym: "meiosis: delayed" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000051 ! abnormal meiosis
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000478
name: normal meiosis
def: "A cellular process phenotype in which meiosis is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "meiosis: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000627 ! normal cellular process
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000479
name: premature meiosis
def: "A cellular process phenotype in which meiosis occurs prematurely." [PomBase:mah]
synonym: "meiosis: premature" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000051 ! abnormal meiosis
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000481
name: abnormal mitotic recombination
def: "A cellular process phenotype in which mitotic recombination is abnormal." [PomBase:mah]
synonym: "abnormal mitotic recombination during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic recombination: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001345 ! abnormal DNA recombination during vegetative growth
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000482
name: decreased mitotic recombination
def: "A cellular process phenotype in which the occurrence of mitotic recombination is decreased." [PomBase:mah]
synonym: "decreased mitotic recombination during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic recombination: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced mitotic recombination" EXACT [PomBase:mah]
is_a: FYPO:0000481 ! abnormal mitotic recombination
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000483
name: increased rate of mitotic recombination
def: "A cellular process phenotype in which the rate of mitotic recombination is increased." [PomBase:mah]
synonym: "increased rate of mitotic recombination during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic recombination: increased rate" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000481 ! abnormal mitotic recombination
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000484
name: abolished meiotic recombination
def: "A cellular process phenotype in which reciprocal meiotic recombination does not occur." [PomBase:mah]
synonym: "absent meiotic recombination" EXACT [PomBase:mah]
synonym: "meiotic recombination abolished" EXACT [PomBase:mah]
synonym: "meiotic recombination: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000008 ! abnormal meiotic recombination
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000485
name: decreased meiotic recombination
def: "A cellular process phenotype in which the occurrence of reciprocal meiotic recombination is decreased." [PomBase:mah]
synonym: "meiotic recombination: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced meiotic recombination" EXACT [PomBase:mah]
is_a: FYPO:0000008 ! abnormal meiotic recombination
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000486
name: delayed meiotic recombination
def: "A cellular process phenotype in which reciprocal meiotic recombination is delayed." [PomBase:mah]
synonym: "meiotic recombination: delayed" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000008 ! abnormal meiotic recombination
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000487
name: increased meiotic recombination
def: "A cellular process phenotype in which the occurrence of reciprocal meiotic recombination is increased." [PomBase:mah]
synonym: "meiotic recombination: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000008 ! abnormal meiotic recombination
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000488
name: normal meiotic recombination
def: "A cellular process phenotype in which reciprocal meiotic recombination is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "meiotic recombination: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000293 ! DNA metabolism phenotype
is_a: FYPO:0000627 ! normal cellular process
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000489
name: abnormal mitochondrial distribution
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrion distribution is abnormal." [PomBase:mah]
synonym: "abnormal mitochondrial distribution during vegetative growth" EXACT [PomBase:mah]
synonym: "mitochondrial distribution: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000809 ! abnormal mitochondrion organization
is_a: FYPO:0001337 ! localization phenotype during vegetative growth
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000490
name: abnormal mitochondrial genome maintenance
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial genome maintenance is abnormal." [PomBase:mah]
synonym: "abnormal mitochondrial genome maintenance during vegetative growth" EXACT [PomBase:mah]
synonym: "mitochondrial genome maintenance: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000809 ! abnormal mitochondrion organization
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000491
name: abolished mitochondrial genome maintenance
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial genome maintenance does not occur." [PomBase:mah]
synonym: "absent mitochondrial genome maintenance" EXACT [PomBase:mah]
synonym: "mitochondrial genome maintenance abolished" EXACT [PomBase:mah]
synonym: "mitochondrial genome maintenance abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "mitochondrial genome maintenance: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000490 ! abnormal mitochondrial genome maintenance
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000492
name: decreased mitochondrial genome maintenance
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mitochondrial genome maintenance is decreased." [PomBase:mah]
synonym: "decreased mitochondrial genome maintenance during vegetative growth" EXACT [PomBase:mah]
synonym: "mitochondrial genome maintenance: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced mitochondrial genome maintenance" EXACT [PomBase:mah]
is_a: FYPO:0000490 ! abnormal mitochondrial genome maintenance
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000493
name: increased mitochondrial genome maintenance
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mitochondrial genome maintenance is increased." [PomBase:mah]
synonym: "increased mitochondrial genome maintenance during vegetative growth" EXACT [PomBase:mah]
synonym: "mitochondrial genome maintenance: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000490 ! abnormal mitochondrial genome maintenance
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000494
name: normal mitochondrial genome maintenance
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial genome maintenance is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "mitochondrial genome maintenance: normal" EXACT [SGD:phenotype_annotation]
synonym: "normal mitochondrial genome maintenance during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000495
name: abnormal mitochondrial transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial transport is abnormal." [PomBase:mah]
synonym: "abnormal mitochondrial transport during vegetative growth" EXACT [PomBase:mah]
synonym: "mitochondrial transport: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001336 ! transport phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
is_a: FYPO:0001720 ! abnormal transport
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000496
name: decreased mitochondrial transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mitochondrial transport is decreased." [PomBase:mah]
synonym: "decreased mitochondrial transport during vegetative growth" EXACT [PomBase:mah]
synonym: "mitochondrial transport: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced mitochondrial transport" EXACT [PomBase:mah]
is_a: FYPO:0000464 ! decreased intracellular transport
is_a: FYPO:0000495 ! abnormal mitochondrial transport
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000497
name: decreased rate of mitochondrial transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate of mitochondrial transport is decreased." [PomBase:mah]
synonym: "decreased rate of mitochondrial transport during vegetative growth" EXACT [PomBase:mah]
synonym: "mitochondrial transport: decreased rate" EXACT [SGD:phenotype_annotation]
synonym: "reduced rate of mitochondrial transport" EXACT [PomBase:mah]
is_a: FYPO:0000495 ! abnormal mitochondrial transport
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000498
name: normal mitochondrial transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial transport is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "mitochondrial transport: normal" EXACT [SGD:phenotype_annotation]
synonym: "normal mitochondrial transport during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001071 ! normal transport
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000499
name: abolished mitophagy
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitophagy does not occur." [PomBase:mah]
synonym: "absent mitophagy" EXACT [PomBase:mah]
synonym: "mitophagy abolished" EXACT [PomBase:mah]
synonym: "mitophagy abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "mitophagy: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000380 ! abolished autophagy
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000500
name: decreased mitophagy
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mitophagy is decreased." [PomBase:mah]
synonym: "decreased mitophagy during vegetative growth" EXACT [PomBase:mah]
synonym: "mitophagy: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced mitophagy" EXACT [PomBase:mah]
is_a: FYPO:0000381 ! decreased autophagy
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000501
name: increased mitophagy
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mitophagy is increased." [PomBase:mah]
synonym: "increased mitophagy during vegetative growth" EXACT [PomBase:mah]
synonym: "mitophagy: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000384 ! increased autophagy
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000502
name: abnormally arrested mitotic cell cycle
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested under conditions where arrest does not normally occur." [PomBase:mah]
synonym: "abnormal mitotic cell cycle arrest" RELATED [PomBase:mah]
synonym: "abnormally arrested mitotic cell cycle during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle abnormally arrested" EXACT [PomBase:mah]
synonym: "mitotic cell cycle: arrested" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000059 ! abnormal mitotic cell cycle progression
is_a: FYPO:0000407 ! abnormally arrested cell cycle progression
created_by: midori
creation_date: 2011-08-15T10:19:32Z

[Term]
id: FYPO:0000503
name: normal mitotic recombination
def: "A cellular process phenotype in which mitotic recombination is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "mitotic recombination: normal" EXACT [SGD:phenotype_annotation]
synonym: "normal mitotic recombination during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000859 ! normal metabolic process
is_a: FYPO:0001346 ! DNA metabolism phenotype during vegetative growth
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000504
name: decreased necrotic cell death
def: "A cellular process phenotype in which the occurrence of necrotic cell death is decreased. Necrotic cell death is morphologically characterized by a gain in cell volume (oncosis), swelling of organelles, plasma membrane rupture and subsequent loss of intracellular contents." [GO:0070265, PomBase:mah]
comment: This term was made obsolete because necrotic cell death has not been observed in fission yeast.
synonym: "necrotic cell death: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced necrotic cell death" EXACT [PomBase:mah]
is_obsolete: true
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000505
name: increased necrotic cell death
def: "A cellular process phenotype in which the occurrence of necrotic cell death is increased. Necrotic cell death is morphologically characterized by a gain in cell volume (oncosis), swelling of organelles, plasma membrane rupture and subsequent loss of intracellular contents." [GO:0070265, PomBase:mah]
comment: This term was made obsolete because necrotic cell death has not been observed in fission yeast.
synonym: "necrotic cell death: increased" EXACT [SGD:phenotype_annotation]
is_obsolete: true
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000506
name: abnormal nuclear export
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear export is abnormal. Nuclear export is the directed movement of any substance out of the nucleus; export of all substances or a specific substance may be affected." [PomBase:mah]
synonym: "abnormal nuclear export during vegetative growth" EXACT [PomBase:mah]
synonym: "nuclear export: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000518 ! abnormal nuclear transport
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000507
name: abolished nuclear export
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear export does not occur. Nuclear export is the directed movement of any substance out of the nucleus; export of all substances or a specific substance may be affected." [PomBase:mah]
synonym: "absent nuclear export" EXACT [PomBase:mah]
synonym: "nuclear export abolished" EXACT [PomBase:mah]
synonym: "nuclear export abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "nuclear export: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000506 ! abnormal nuclear export
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000508
name: decreased nuclear export
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of nuclear export is decreased. Nuclear export is the directed movement of any substance out of the nucleus; export of all substances or a specific substance may be affected." [PomBase:mah]
synonym: "decreased nuclear export during vegetative growth" EXACT [PomBase:mah]
synonym: "nuclear export: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced nuclear export" EXACT [PomBase:mah]
is_a: FYPO:0000464 ! decreased intracellular transport
is_a: FYPO:0000506 ! abnormal nuclear export
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000509
name: normal nuclear export
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear export is normal (i.e. indistinguishable from wild type). Nuclear export is the directed movement of any substance out of the nucleus; export of all substances or a specific substance may be affected." [PomBase:mah]
synonym: "normal nuclear export during vegetative growth" EXACT [PomBase:mah]
synonym: "nuclear export: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001071 ! normal transport
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000510
name: abnormal nuclear fusion during mating
def: "A cellular process phenotype in which karyogamy involved in conjugation with cellular fusion is abnormal." [PomBase:mah]
synonym: "abnormal karyogamy" EXACT [PomBase:mah]
synonym: "abnormal karyogamy involved in conjugation with cellular fusion" EXACT [PomBase:mah]
synonym: "nuclear fusion during mating: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000511
name: abolished nuclear fusion during mating
def: "A cellular process phenotype in which karyogamy involved in conjugation with cellular fusion does not occur." [PomBase:mah]
synonym: "absent nuclear fusion during mating" EXACT [PomBase:mah]
synonym: "karyogamy abolished" EXACT [PomBase:mah]
synonym: "karyogamy involved in conjugation with cellular fusion abolished" EXACT [PomBase:mah]
synonym: "nuclear fusion during mating abolished" EXACT [PomBase:mah]
synonym: "nuclear fusion during mating: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000510 ! abnormal nuclear fusion during mating
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000512
name: decreased nuclear fusion during mating
def: "A cellular process phenotype in which the occurrence of karyogamy involved in conjugation with cellular fusion is decreased." [PomBase:mah]
synonym: "decreased karyogamy" EXACT [PomBase:mah]
synonym: "decreased karyogamy involved in conjugation with cellular fusion" EXACT [PomBase:mah]
synonym: "nuclear fusion during mating: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced nuclear fusion during mating" EXACT [PomBase:mah]
is_a: FYPO:0000510 ! abnormal nuclear fusion during mating
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000513
name: delayed nuclear fusion during mating
def: "A cellular process phenotype in which karyogamy involved in conjugation with cellular fusion is delayed." [PomBase:mah]
synonym: "delayed karyogamy" EXACT [PomBase:mah]
synonym: "delayed karyogamy involved in conjugation with cellular fusion" EXACT [PomBase:mah]
synonym: "nuclear fusion during mating: delayed" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000510 ! abnormal nuclear fusion during mating
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000514
name: abolished nuclear import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear import does not occur. Nuclear import is the directed movement of any substance into the nucleus; import of all substances or a specific substance may be affected." [PomBase:mah]
synonym: "absent nuclear import" EXACT [PomBase:mah]
synonym: "nuclear import abolished" EXACT [PomBase:mah]
synonym: "nuclear import abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "nuclear import: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001217 ! abnormal nuclear import
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000515
name: decreased nuclear import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of nuclear import is decreased. Nuclear import is the directed movement of any substance into the nucleus; import of all substances or a specific substance may be affected." [PomBase:mah]
synonym: "decreased nuclear import during vegetative growth" EXACT [PomBase:mah]
synonym: "nuclear import: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced nuclear import" EXACT [PomBase:mah]
is_a: FYPO:0000464 ! decreased intracellular transport
is_a: FYPO:0001217 ! abnormal nuclear import
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000516
name: normal nuclear import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear import is normal (i.e. indistinguishable from wild type). Nuclear import is the directed movement of any substance into the nucleus; import of all substances or a specific substance may be affected." [PomBase:mah]
synonym: "normal nuclear import during vegetative growth" EXACT [PomBase:mah]
synonym: "nuclear import: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001071 ! normal transport
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000517
name: abnormal nucleus localization
def: "A cellular process phenotype in which nucleus localization is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "abnormal nuclear localization" EXACT [PomBase:mah]
synonym: "abnormal nucleus localisation" EXACT [PomBase:mah]
is_a: FYPO:0000138 ! localization phenotype
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000518
name: abnormal nuclear transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear transport is abnormal." [PomBase:mah]
synonym: "abnormal nuclear transport during vegetative growth" EXACT [PomBase:mah]
synonym: "nuclear transport: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001336 ! transport phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
is_a: FYPO:0001720 ! abnormal transport
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000519
name: decreased oxidative phosphorylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of oxidative phosphorylation is decreased." [PomBase:mah]
synonym: "decreased oxidative phosphorylation during vegetative growth" EXACT [PomBase:mah]
synonym: "oxidative phosphorylation: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced oxidative phosphorylation" EXACT [PomBase:mah]
is_a: FYPO:0001348 ! cellular metabolism phenotype during vegetative growth
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000520
name: increased oxidative phosphorylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of oxidative phosphorylation is increased." [PomBase:mah]
synonym: "increased oxidative phosphorylation during vegetative growth" EXACT [PomBase:mah]
synonym: "oxidative phosphorylation: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001348 ! cellular metabolism phenotype during vegetative growth
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000521
name: abnormal peroxisome localization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which peroxisome localization is abnormal." [PomBase:mah]
synonym: "abnormal peroxisomal distribution" EXACT [PomBase:mah]
synonym: "abnormal peroxisome localisation" EXACT [PomBase:mah]
synonym: "abnormal peroxisome localization during vegetative growth" EXACT [PomBase:mah]
synonym: "peroxisomal distribution: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001337 ! localization phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000522
name: abnormal peroxisomal transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which peroxisomal transport is abnormal." [PomBase:mah]
synonym: "abnormal peroxisomal transport during vegetative growth" EXACT [PomBase:mah]
synonym: "peroxisomal transport: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001336 ! transport phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
is_a: FYPO:0001720 ! abnormal transport
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000523
name: abolished peroxisomal transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which peroxisomal transport does not occur." [PomBase:mah]
synonym: "absent peroxisomal transport" EXACT [PomBase:mah]
synonym: "peroxisomal transport abolished" EXACT [PomBase:mah]
synonym: "peroxisomal transport abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "peroxisomal transport: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000522 ! abnormal peroxisomal transport
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000524
name: decreased peroxisomal transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of peroxisomal transport is decreased." [PomBase:mah]
synonym: "decreased peroxisomal transport during vegetative growth" EXACT [PomBase:mah]
synonym: "peroxisomal transport: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced peroxisomal transport" EXACT [PomBase:mah]
is_a: FYPO:0000464 ! decreased intracellular transport
is_a: FYPO:0000522 ! abnormal peroxisomal transport
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000525
name: abolished peroxisome degradation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which pexophagy does not occur." [PomBase:mah]
synonym: "absent pexophagy" EXACT [PomBase:mah]
synonym: "peroxisome degradation abolished" EXACT [PomBase:mah]
synonym: "peroxisome degradation abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "pexophagy abolished" EXACT [PomBase:mah]
synonym: "pexophagy: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000380 ! abolished autophagy
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000526
name: decreased peroxisome degradation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of pexophagy is decreased." [PomBase:mah]
synonym: "decreased peroxisome degradation during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased pexophagy" EXACT [PomBase:mah]
synonym: "pexophagy: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced peroxisome degradation" EXACT [PomBase:mah]
is_a: FYPO:0000381 ! decreased autophagy
is_a: FYPO:0000811 ! abnormal peroxisome organization
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000527
name: decreased rate of peroxisome degradation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate of pexophagy is decreased." [PomBase:mah]
synonym: "decreased rate of peroxisome degradation during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased rate of pexophagy" EXACT [PomBase:mah]
synonym: "pexophagy: decreased rate" EXACT [SGD:phenotype_annotation]
synonym: "reduced rate of peroxisome degradation" EXACT [PomBase:mah]
is_a: FYPO:0000382 ! decreased rate of autophagy
is_a: FYPO:0000811 ! abnormal peroxisome organization
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000528
name: delayed peroxisome degradation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which pexophagy is delayed." [PomBase:mah]
synonym: "delayed peroxisome degradation during vegetative growth" EXACT [PomBase:mah]
synonym: "delayed pexophagy" EXACT [PomBase:mah]
synonym: "pexophagy: delayed" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000383 ! delayed autophagy
is_a: FYPO:0000811 ! abnormal peroxisome organization
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000529
name: normal peroxisome degradation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which peroxisome degradation is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal peroxisome degradation during vegetative growth" EXACT [PomBase:mah]
synonym: "normal pexophagy" EXACT [PomBase:mah]
synonym: "pexophagy: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000385 ! normal autophagy
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000530
name: abnormal cell cycle arrest in response to pheromone
def: "A cellular process phenotype in which the cell cycle arrest that normally occurs in response to pheromone is abnormal." [PomBase:mah]
synonym: "abnormal pheromone-induced cell cycle arrest" EXACT [PomBase:mah]
synonym: "pheromone-induced cell cycle arrest: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000302 ! abnormal response to pheromone
is_a: FYPO:0001026 ! abnormal occurrence of normal cell cycle arrest
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000531
name: abolished cell cycle arrest in response to pheromone
def: "A cellular process phenotype in which cell cycle arrest in response to pheromone does not occur." [PomBase:mah]
synonym: "absent pheromone-induced cell cycle arrest" EXACT [PomBase:mah]
synonym: "cell cycle arrest in response to pheromone abolished" EXACT [PomBase:mah]
synonym: "pheromone-induced cell cycle arrest abolished" EXACT [PomBase:mah]
synonym: "pheromone-induced cell cycle arrest: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000530 ! abnormal cell cycle arrest in response to pheromone
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000532
name: decreased cell cycle arrest in response to pheromone
def: "A cellular process phenotype in which the occurrence of cell cycle arrest in response to pheromone is decreased." [PomBase:mah]
synonym: "decreased pheromone-induced cell cycle arrest" EXACT [PomBase:mah]
synonym: "pheromone-induced cell cycle arrest: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced cell cycle arrest in response to pheromone" EXACT [PomBase:mah]
is_a: FYPO:0000530 ! abnormal cell cycle arrest in response to pheromone
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000533
name: normal cell cycle arrest in response to pheromone
def: "A cellular process phenotype in which cell cycle arrest in response to pheromone is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal pheromone-induced cell cycle arrest" EXACT [PomBase:mah]
synonym: "pheromone-induced cell cycle arrest: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001025 ! normally arrested cell cycle progression
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000534
name: abnormal spindle pole body localization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which spindle pole body localization is abnormal." [PomBase:mah]
synonym: "abnormal position of spindle pole body" EXACT [PomBase:mah]
synonym: "abnormal SPB localization" EXACT [PomBase:mah]
synonym: "abnormal spindle pole body localisation" EXACT [PomBase:mah]
synonym: "abnormal spindle pole body localization during vegetative growth" EXACT [PomBase:mah]
synonym: "position of spindle pole body: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001337 ! localization phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000535
name: normal spindle pole body localization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which spindle pole body localization is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal position of spindle pole body" EXACT [PomBase:mah]
synonym: "normal SPB localization" EXACT [PomBase:mah]
synonym: "normal spindle pole body localisation" EXACT [PomBase:mah]
synonym: "normal spindle pole body localization during vegetative growth" EXACT [PomBase:mah]
synonym: "position of spindle pole body: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001337 ! localization phenotype during vegetative growth
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000536
name: abnormal protein secretion
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein secretion is abnormal." [PomBase:mah]
synonym: "abnormal protein secretion during vegetative growth" EXACT [PomBase:mah]
synonym: "protein secretion: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000540 ! abnormal protein transport
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000537
name: abolished protein secretion
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein secretion does not occur." [PomBase:mah]
synonym: "absent protein secretion" EXACT [PomBase:mah]
synonym: "protein secretion abolished" EXACT [PomBase:mah]
synonym: "protein secretion abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "protein secretion: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000536 ! abnormal protein secretion
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000538
name: decreased protein secretion
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein secretion is decreased." [PomBase:mah]
synonym: "decreased protein secretion during vegetative growth" EXACT [PomBase:mah]
synonym: "protein secretion: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced protein secretion" EXACT [PomBase:mah]
is_a: FYPO:0000536 ! abnormal protein secretion
is_a: FYPO:0000541 ! decreased protein transport
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000539
name: increased protein secretion
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein secretion is increased." [PomBase:mah]
synonym: "increased protein secretion during vegetative growth" EXACT [PomBase:mah]
synonym: "protein secretion: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000536 ! abnormal protein secretion
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000540
name: abnormal protein transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein transport is abnormal." [PomBase:mah]
synonym: "abnormal protein transport during vegetative growth" EXACT [PomBase:mah]
synonym: "protein transport: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
is_a: FYPO:0001336 ! transport phenotype during vegetative growth
is_a: FYPO:0001720 ! abnormal transport
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000541
name: decreased protein transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein transport is decreased." [PomBase:mah]
synonym: "decreased protein transport during vegetative growth" EXACT [PomBase:mah]
synonym: "protein transport: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced protein transport" EXACT [PomBase:mah]
is_a: FYPO:0000540 ! abnormal protein transport
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000542
name: increased rate of protein transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate of protein transport is increased." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "increased rate of protein transport during vegetative growth" EXACT [PomBase:mah]
synonym: "protein transport: increased rate" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000540 ! abnormal protein transport
created_by: midori
creation_date: 2011-08-15T11:08:30Z

[Term]
id: FYPO:0000544
name: abolished protein modification
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein modification does not occur. All modifications may be affected, or only modifications of a certain type, or on specific proteins, or even specific sites within specific proteins." [PomBase:mah]
synonym: "abolished protein/peptide modification" EXACT [PomBase:mah]
synonym: "absent protein/peptide modification" EXACT [PomBase:mah]
synonym: "protein modification abolished" EXACT [PomBase:mah]
synonym: "protein modification abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "protein/peptide modification: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000329 ! abnormal protein modification
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000545
name: decreased protein modification
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein modification is decreased. All modifications may be affected, or only modifications of a certain type, or on specific proteins, or even specific sites within specific proteins." [PomBase:mah]
synonym: "decreased protein modification during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased protein/peptide modification" EXACT [PomBase:mah]
synonym: "protein/peptide modification: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced protein modification" EXACT [PomBase:mah]
is_a: FYPO:0000329 ! abnormal protein modification
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000546
name: delayed protein modification
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein modification is delayed. All modifications may be affected, or only modifications of a certain type, or on specific proteins, or even specific sites within specific proteins." [PomBase:mah]
synonym: "delayed protein modification during vegetative growth" EXACT [PomBase:mah]
synonym: "delayed protein/peptide modification" EXACT [PomBase:mah]
synonym: "protein/peptide modification: delayed" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000329 ! abnormal protein modification
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000547
name: increased protein modification
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein modification is increased. All modifications may be affected, or only modifications of a certain type, or on specific proteins, or even specific sites within specific proteins." [PomBase:mah]
synonym: "increased protein modification during vegetative growth" EXACT [PomBase:mah]
synonym: "increased protein/peptide modification" EXACT [PomBase:mah]
synonym: "protein/peptide modification: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000329 ! abnormal protein modification
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000548
name: increased duration of protein modification
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the duration of protein modification processes is increased. All modifications may be affected, or only modifications of a certain type, or on specific proteins, or even specific sites within specific proteins." [PomBase:mah]
synonym: "increased duration of protein modification during vegetative growth" EXACT [PomBase:mah]
synonym: "increased duration protein/peptide modification" EXACT [PomBase:mah]
synonym: "protein/peptide modification: increased duration" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000329 ! abnormal protein modification
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000549
name: normal protein modification
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein modification is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal protein modification during vegetative growth" EXACT [PomBase:mah]
synonym: "normal protein/peptide modification" EXACT [PomBase:mah]
synonym: "protein/peptide modification: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000859 ! normal metabolic process
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000550
name: abnormal pseudohyphal growth
alt_id: FYPO:0000435
def: "A cellular process phenotype in which pseudohyphal growth is abnormal." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "abnormal filamentous growth" BROAD [PomBase:mah]
synonym: "filamentous growth: abnormal" BROAD [SGD:phenotype_annotation]
synonym: "pseudohyphal growth: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000045 ! abnormal cell population growth
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000551
name: pseudohyphal growth abolished
alt_id: FYPO:0000436
def: "A cellular process phenotype in which pseudohyphal growth does not occur." [PomBase:mah]
synonym: "abolished filamentous growth" BROAD [PomBase:mah]
synonym: "abolished pseudohyphal growth" EXACT [PomBase:mah]
synonym: "absent filamentous growth" BROAD [PomBase:mah]
synonym: "absent pseudohyphal growth" EXACT [PomBase:mah]
synonym: "filamentous growth abolished" BROAD [PomBase:mah]
synonym: "filamentous growth: absent" BROAD [SGD:phenotype_annotation]
synonym: "pseudohyphal growth: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000550 ! abnormal pseudohyphal growth
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000552
name: decreased pseudohyphal growth
alt_id: FYPO:0000437
def: "A cellular process phenotype in which the occurrence of pseudohyphal growth is decreased." [PomBase:mah]
synonym: "decreased filamentous growth" BROAD [PomBase:mah]
synonym: "filamentous growth: decreased" BROAD [SGD:phenotype_annotation]
synonym: "pseudohyphal growth: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced pseudohyphal growth" EXACT [PomBase:mah]
is_a: FYPO:0000550 ! abnormal pseudohyphal growth
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000553
name: increased pseudohyphal growth during cellular hyperosmotic response
alt_id: FYPO:0000438
def: "A cellular process phenotype in which the occurrence of pseudohyphal growth is increased during a cellular hyperosmotic response." [PomBase:mah]
synonym: "increased filamentous growth during cellular hyperosmotic response" BROAD [PomBase:mah]
is_a: FYPO:0000550 ! abnormal pseudohyphal growth
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000554
name: normal pseudohyphal growth
alt_id: FYPO:0000439
def: "A cell population phenotype in which pseudohyphal growth is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "filamentous growth: normal" BROAD [SGD:phenotype_annotation]
synonym: "normal filamentous growth" BROAD [PomBase:mah]
synonym: "pseudohyphal growth: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000047 ! normal cell population growth
is_a: FYPO:0002062 ! normal cell growth
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000555
name: abnormal re-entry into mitotic cell cycle after pheromone arrest
def: "A cellular process phenotype in which re-entry into the mitotic cell cycle after pheromone arrest is abnormal." [PomBase:mah]
synonym: "abnormal recovery from pheromone-induced cell cycle arrest" EXACT [PomBase:mah]
synonym: "recovery from pheromone-induced cell cycle arrest: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000145 ! regulation phenotype
is_a: FYPO:0000302 ! abnormal response to pheromone
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000556
name: abolished re-entry into mitotic cell cycle after pheromone arrest
def: "A cellular process phenotype in which re-entry into the mitotic cell cycle after pheromone arrest does not occur." [PomBase:mah]
synonym: "absent recovery from pheromone-induced cell cycle arrest" EXACT [PomBase:mah]
synonym: "re-entry into mitotic cell cycle after pheromone arrest abolished" EXACT [PomBase:mah]
synonym: "recovery from pheromone-induced cell cycle arrest abolished" EXACT [PomBase:mah]
synonym: "recovery from pheromone-induced cell cycle arrest: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000555 ! abnormal re-entry into mitotic cell cycle after pheromone arrest
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000557
name: decreased re-entry into mitotic cell cycle after pheromone arrest
def: "A cellular process phenotype in which the occurrence of re-entry into the mitotic cell cycle after pheromone arrest is decreased." [PomBase:mah]
synonym: "decreased recovery from pheromone-induced cell cycle arrest" EXACT [PomBase:mah]
synonym: "recovery from pheromone-induced cell cycle arrest: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced re-entry into mitotic cell cycle after pheromone arrest" EXACT [PomBase:mah]
is_a: FYPO:0000555 ! abnormal re-entry into mitotic cell cycle after pheromone arrest
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000558
name: increased re-entry into mitotic cell cycle after pheromone arrest
def: "A cellular process phenotype in which the occurrence of re-entry into the mitotic cell cycle after pheromone arrest is increased." [PomBase:mah]
synonym: "increased recovery from pheromone-induced cell cycle arrest" EXACT [PomBase:mah]
synonym: "recovery from pheromone-induced cell cycle arrest: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000555 ! abnormal re-entry into mitotic cell cycle after pheromone arrest
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000559
name: increased rate of re-entry into mitotic cell cycle after pheromone arrest
def: "A cellular process phenotype in which the rate of re-entry into the mitotic cell cycle after pheromone arrest is increased." [PomBase:mah]
synonym: "increased rate of recovery from pheromone-induced cell cycle arrest" EXACT [PomBase:mah]
synonym: "recovery from pheromone-induced cell cycle arrest: increased rate" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000555 ! abnormal re-entry into mitotic cell cycle after pheromone arrest
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000560
name: normal re-entry into mitotic cell cycle after pheromone arrest
def: "A cellular process phenotype in which re-entry into the mitotic cell cycle after pheromone arrest is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal recovery from pheromone-induced cell cycle arrest" EXACT [PomBase:mah]
synonym: "recovery from pheromone-induced cell cycle arrest: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000145 ! regulation phenotype
is_a: FYPO:0001113 ! normal cellular response to pheromone
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000561
name: normal mitotic G1 phase progression
def: "A cellular process phenotype in which progression through the G1 phase of the mitotic cell cycle is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "mitotic cell cycle progression in G1 phase: normal" EXACT [SGD:phenotype_annotation]
synonym: "normal mitotic cell cycle progression in G1" EXACT [PomBase:mah]
synonym: "normal mitotic G1 phase progression during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000411 ! normal cell cycle progression
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000562
name: abolished cellular respiration
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cellular respiration does not occur." [PomBase:mah]
synonym: "absent respiratory metabolism" EXACT [PomBase:mah]
synonym: "cellular respiration abolished" EXACT [PomBase:mah]
synonym: "cellular respiration abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "respiration abolished" BROAD [PomBase:mah]
synonym: "respiratory metabolism abolished" EXACT [PomBase:mah]
synonym: "respiratory metabolism: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000078 ! abnormal cellular respiration
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000563
name: abnormal mitotic G2 phase progression
def: "A cellular process phenotype in which progression through the G2 phase of the mitotic cell cycle is abnormal." [PomBase:mah]
synonym: "abnormal mitotic cell cycle progression in G2" EXACT [PomBase:mah]
synonym: "abnormal mitotic G2 phase progression during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in G2 phase: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000059 ! abnormal mitotic cell cycle progression
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000564
name: decreased rate of cellular respiration
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate of cellular respiration is decreased." [PomBase:mah]
synonym: "decreased rate of cellular respiration during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased rate of respiration" BROAD [PomBase:mah]
synonym: "decreased rate of respiratory metabolism" EXACT [PomBase:mah]
synonym: "reduced rate of cellular respiration" EXACT [PomBase:mah]
synonym: "respiratory metabolism: decreased rate" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000078 ! abnormal cellular respiration
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000565
name: increased cellular respiration
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of cellular respiration is increased." [PomBase:mah]
synonym: "increased cellular respiration during vegetative growth" EXACT [PomBase:mah]
synonym: "increased respiration" BROAD [PomBase:mah]
synonym: "increased respiratory metabolism" EXACT [PomBase:mah]
synonym: "respiratory metabolism: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000078 ! abnormal cellular respiration
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000566
name: normal cellular respiration
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cellular respiration is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular respiration during vegetative growth" EXACT [PomBase:mah]
synonym: "normal respiration" BROAD [PomBase:mah]
synonym: "normal respiratory metabolism" EXACT [PomBase:mah]
synonym: "respiratory metabolism: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000859 ! normal metabolic process
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000567
name: decreased duration of septation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the duration of septation is decreased." [PomBase:mah]
synonym: "decreased barrier septum formation involved in cell cycle cytokinesis" RELATED [PomBase:mah]
synonym: "decreased duration of barrier septum formation involved in cell cycle cytokinesis" EXACT [PomBase:mah]
synonym: "decreased duration of septation during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased septation" RELATED [PomBase:mah]
synonym: "decreased septum formation" RELATED [PomBase:mah]
synonym: "reduced duration of septation" EXACT [PomBase:mah]
synonym: "septum formation: decreased" BROAD [SGD:phenotype_annotation]
is_a: FYPO:0000117 ! abnormal septation
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000568
name: abnormal shmoo formation
def: "A cellular process phenotype in which mating projection assembly is abnormal." [PomBase:mah]
synonym: "abnormal conjugation tube formation" EXACT [PomBase:mah]
synonym: "abnormal mating projection assembly" EXACT [PomBase:mah]
synonym: "abnormal mating projection formation" EXACT [PomBase:mah]
synonym: "abnormal shmoo assembly" EXACT [PomBase:mah]
synonym: "shmoo formation: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000336 ! abnormal cellular component assembly
is_a: FYPO:0000679 ! developmental process phenotype
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000569
name: abolished shmoo formation
def: "A cellular process phenotype in which mating projection assembly does not occur." [PomBase:mah]
synonym: "abolished conjugation tube formation" EXACT [PomBase:mah]
synonym: "absent shmoo formation" EXACT [PomBase:mah]
synonym: "mating projection assembly abolished" EXACT [PomBase:mah]
synonym: "mating projection formation abolished" EXACT [PomBase:mah]
synonym: "shmoo assembly abolished" EXACT [PomBase:mah]
synonym: "shmoo formation abolished" EXACT [PomBase:mah]
synonym: "shmoo formation: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000568 ! abnormal shmoo formation
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000570
name: decreased shmoo formation
def: "A cellular process phenotype in which the occurrence of mating projection assembly is decreased." [PomBase:mah]
synonym: "decreased conjugation tube formation" EXACT [PomBase:mah]
synonym: "decreased mating projection assembly" EXACT [PomBase:mah]
synonym: "decreased mating projection formation" EXACT [PomBase:mah]
synonym: "decreased shmoo assembly" EXACT [PomBase:mah]
synonym: "reduced shmoo formation" EXACT [PomBase:mah]
synonym: "shmoo formation: decreased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000568 ! abnormal shmoo formation
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000571
name: decreased rate of shmoo formation
def: "A cellular process phenotype in which the rate of mating projection assembly is decreased." [PomBase:mah]
synonym: "decreased rate of conjugation tube formation" EXACT [PomBase:mah]
synonym: "decreased rate of mating projection assembly" EXACT [PomBase:mah]
synonym: "decreased rate of mating projection formation" EXACT [PomBase:mah]
synonym: "decreased rate of shmoo assembly" EXACT [PomBase:mah]
synonym: "reduced rate of shmoo formation" EXACT [PomBase:mah]
synonym: "shmoo formation: decreased rate" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000568 ! abnormal shmoo formation
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000572
name: increased rate of shmoo formation
def: "A cellular process phenotype in which the rate of mating projection assembly is increased." [PomBase:mah]
synonym: "increased rate of conjugation tube formation" EXACT [PomBase:mah]
synonym: "increased rate of mating projection assembly" EXACT [PomBase:mah]
synonym: "increased rate of mating projection formation" EXACT [PomBase:mah]
synonym: "increased rate of shmoo assembly" EXACT [PomBase:mah]
synonym: "shmoo formation: increased rate" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000568 ! abnormal shmoo formation
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000573
name: normal shmoo formation
def: "A cellular process phenotype in which mating projection assembly is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal conjugation tube formation" EXACT [PomBase:mah]
synonym: "normal mating projection assembly" EXACT [PomBase:mah]
synonym: "normal mating projection formation" EXACT [PomBase:mah]
synonym: "normal shmoo assembly" EXACT [PomBase:mah]
synonym: "shmoo formation: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000627 ! normal cellular process
is_a: FYPO:0000679 ! developmental process phenotype
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000574
name: abnormal gene silencing
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which gene silencing is abnormal." [PomBase:mah]
synonym: "abnormal gene silencing during vegetative growth" EXACT [PomBase:mah]
synonym: "silencing: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001333 ! gene expression regulation phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000575
name: abolished gene silencing
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which gene silencing does not occur." [PomBase:mah]
synonym: "absent silencing" EXACT [PomBase:mah]
synonym: "gene silencing abolished" EXACT [PomBase:mah]
synonym: "gene silencing abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "silencing: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000574 ! abnormal gene silencing
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000576
name: decreased gene silencing
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of gene silencing is decreased." [PomBase:mah]
synonym: "decreased gene silencing during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced gene silencing" EXACT [PomBase:mah]
synonym: "silencing: decreased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000574 ! abnormal gene silencing
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000577
name: increased gene silencing
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of gene silencing is increased." [PomBase:mah]
synonym: "increased gene silencing during vegetative growth" EXACT [PomBase:mah]
synonym: "silencing: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000574 ! abnormal gene silencing
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000578
name: normal gene silencing
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which gene silencing is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal gene silencing during vegetative growth" EXACT [PomBase:mah]
synonym: "silencing: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001333 ! gene expression regulation phenotype during vegetative growth
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000579
name: normal spore germination
def: "A cellular process phenotype in which spore germination is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "spore germination: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000627 ! normal cellular process
is_a: FYPO:0000679 ! developmental process phenotype
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000580
name: abnormal ascospore wall biogenesis
def: "A cellular process phenotype in which ascospore wall biogenesis is abnormal." [PomBase:mah]
synonym: "abnormal spore wall formation" RELATED [PomBase:mah]
synonym: "spore wall formation: abnormal" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0000174 ! abnormal cell wall biogenesis
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000581
name: decreased spore germination
def: "A cellular process phenotype in which the occurrence of spore germination is decreased." [PomBase:mah]
synonym: "reduced spore germination" EXACT [PomBase:mah]
synonym: "spore germination: decreased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000305 ! abnormal spore germination
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000582
name: decreased rate of spore germination
def: "A cellular process phenotype in which the rate of spore germination is decreased." [PomBase:mah]
synonym: "reduced rate of spore germination" EXACT [PomBase:mah]
synonym: "spore germination: decreased rate" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000305 ! abnormal spore germination
created_by: midori
creation_date: 2011-08-15T11:41:34Z

[Term]
id: FYPO:0000583
name: abolished sporulation
def: "A cellular process phenotype in which ascospore formation does not occur." [PomBase:mah]
synonym: "absent sporulation" EXACT [PomBase:mah]
synonym: "ascospore formation abolished" EXACT [PomBase:mah]
synonym: "sporulation abolished" EXACT [PomBase:mah]
synonym: "sporulation: absent" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000121 ! abnormal sporulation
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000584
name: decreased sporulation
def: "A cellular process phenotype in which the occurrence of ascospore formation is decreased." [PomBase:mah]
synonym: "decreased ascospore formation" EXACT [PomBase:mah]
synonym: "decreased sporulation frequency" EXACT [PomBase:mah]
synonym: "reduced sporulation" EXACT [PomBase:mah]
synonym: "sporulation: decreased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000121 ! abnormal sporulation
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000585
name: abolished ascospore wall biogenesis
def: "A cellular process phenotype in which ascospore wall biogenesis does not occur." [PomBase:mah]
synonym: "absent spore wall formation" RELATED [PomBase:mah]
synonym: "ascospore wall biogenesis abolished" EXACT [PomBase:mah]
synonym: "spore wall formation abolished" RELATED [PomBase:mah]
synonym: "spore wall formation: absent" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0000580 ! abnormal ascospore wall biogenesis
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000586
name: abolished ascospore wall assembly
def: "A cellular process phenotype in which ascospore wall assembly does not occur." [PomBase:mah]
synonym: "absent spore wall formation" RELATED [PomBase:mah]
synonym: "ascospore wall assembly abolished" EXACT [PomBase:mah]
synonym: "spore wall formation abolished" RELATED [PomBase:mah]
synonym: "spore wall formation: absent" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0000175 ! abnormal ascospore wall assembly
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000587
name: delayed sporulation
def: "A cellular process phenotype in which ascospore formation is delayed." [PomBase:mah]
synonym: "delayed ascospore formation" EXACT [PomBase:mah]
synonym: "sporulation: delayed" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000121 ! abnormal sporulation
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000588
name: increased sporulation
def: "A cellular process phenotype in which the occurrence of ascospore formation is increased." [PomBase:mah]
synonym: "increased ascospore formation" EXACT [PomBase:mah]
synonym: "sporulation: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000121 ! abnormal sporulation
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000589
name: increased rate of sporulation
def: "A cellular process phenotype in which the rate of ascospore formation is increased, i.e. sporulation takes place more rapidly than in wild type." [PomBase:mah]
synonym: "increased rate of ascospore formation" EXACT [PomBase:mah]
synonym: "sporulation: increased rate" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000121 ! abnormal sporulation
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000590
name: normal sporulation
def: "A cellular process phenotype in which ascospore formation is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal ascospore formation" EXACT [PomBase:mah]
synonym: "sporulation: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000627 ! normal cellular process
is_a: FYPO:0000679 ! developmental process phenotype
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000591
name: abnormal transposition
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transposition is abnormal." [PomBase:mah]
synonym: "abnormal transposable element transposition" EXACT [PomBase:mah]
synonym: "abnormal transposition during vegetative growth" EXACT [PomBase:mah]
synonym: "transposable element transposition: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000592
name: abolished transposition
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transposition does not occur." [PomBase:mah]
synonym: "absent transposable element transposition" EXACT [PomBase:mah]
synonym: "transposable element transposition abolished" EXACT [PomBase:mah]
synonym: "transposable element transposition: absent" EXACT [SGD:phenotype_annotation]
synonym: "transposition abolished" EXACT [PomBase:mah]
synonym: "transposition abolished during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000591 ! abnormal transposition
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000593
name: decreased transposition
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of transposition is decreased." [PomBase:mah]
synonym: "decreased transposable element transposition" EXACT [PomBase:mah]
synonym: "decreased transposition during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced transposition" EXACT [PomBase:mah]
synonym: "transposable element transposition: decreased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000591 ! abnormal transposition
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000594
name: increased transposition
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of transposition is increased." [PomBase:mah]
synonym: "increased transposable element transposition" EXACT [PomBase:mah]
synonym: "increased transposition during vegetative growth" EXACT [PomBase:mah]
synonym: "transposable element transposition: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000591 ! abnormal transposition
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000595
name: increased rate of transposition
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate of transposition is increased." [PomBase:mah]
synonym: "increased rate of transposable element transposition" EXACT [PomBase:mah]
synonym: "increased rate of transposition during vegetative growth" EXACT [PomBase:mah]
synonym: "transposable element transposition: increased rate" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000591 ! abnormal transposition
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000596
name: normal transposition
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transposition is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal transposable element transposition" EXACT [PomBase:mah]
synonym: "normal transposition during vegetative growth" EXACT [PomBase:mah]
synonym: "transposable element transposition: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000597
name: abnormal vacuolar transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which vacuolar transport is abnormal." [PomBase:mah]
synonym: "abnormal vacuolar transport during vegetative growth" EXACT [PomBase:mah]
synonym: "vacuolar transport: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001336 ! transport phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
is_a: FYPO:0001720 ! abnormal transport
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000598
name: decreased vacuolar transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of vacuolar transport is decreased." [PomBase:mah]
synonym: "decreased vacuolar transport during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced vacuolar transport" EXACT [PomBase:mah]
synonym: "vacuolar transport: decreased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000464 ! decreased intracellular transport
is_a: FYPO:0000597 ! abnormal vacuolar transport
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000599
name: decreased rate of vacuolar transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate of vacuolar transport is decreased." [PomBase:mah]
synonym: "decreased rate of vacuolar transport during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced rate of vacuolar transport" EXACT [PomBase:mah]
synonym: "vacuolar transport: decreased rate" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000597 ! abnormal vacuolar transport
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000600
name: delayed vacuolar transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which vacuolar transport is delayed." [PomBase:mah]
synonym: "delayed vacuolar transport during vegetative growth" EXACT [PomBase:mah]
synonym: "vacuolar transport: delayed" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000597 ! abnormal vacuolar transport
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000601
name: normal vacuolar transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which vacuolar transport is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal vacuolar transport during vegetative growth" EXACT [PomBase:mah]
synonym: "vacuolar transport: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0001071 ! normal transport
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000602
name: abnormal mitotic G1 phase progression
def: "A cellular process phenotype in which progression through the G1 phase of the mitotic cell cycle is abnormal." [PomBase:mah]
synonym: "abnormal mitotic cell cycle progression in G1" EXACT [PomBase:mah]
synonym: "abnormal mitotic G1 phase progression during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in G1 phase: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000059 ! abnormal mitotic cell cycle progression
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000603
name: decreased duration of mitotic G1 phase
def: "A cellular process phenotype in which the duration of G1 phase of a mitotic cell cycle is shorter than normal." [PomBase:mah]
synonym: "decreased duration of mitotic G1 phase during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in G1 phase: decreased duration" EXACT [SGD:phenotype_annotation]
synonym: "reduced duration of mitotic G1 phase" EXACT [PomBase:mah]
is_a: FYPO:0000602 ! abnormal mitotic G1 phase progression
is_a: FYPO:0001070 ! decreased duration of mitotic cell cycle phase
created_by: midori
creation_date: 2011-08-15T12:00:20Z

[Term]
id: FYPO:0000607
name: abnormal mitotic M phase progression
def: "A cellular process phenotype in which progression through M phase of the mitotic cell cycle is abnormal." [PomBase:mah]
synonym: "abnormal mitotic cell cycle progression in M" EXACT [PomBase:mah]
synonym: "abnormal mitotic M phase progression during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in M phase: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000059 ! abnormal mitotic cell cycle progression
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000608
name: mitotic cell cycle arrest in M phase
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested in M phase." [PomBase:mah]
synonym: "abnormal mitotic cell cycle arrest in M phase" EXACT [PomBase:mah]
synonym: "mitotic cell cycle arrest in M phase during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in M phase: arrested" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000502 ! abnormally arrested mitotic cell cycle
is_a: FYPO:0000607 ! abnormal mitotic M phase progression
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000610
name: abnormal mitotic S phase progression
def: "A cellular process phenotype in which progression through S phase of the mitotic cell cycle is abnormal." [PomBase:mah]
synonym: "abnormal mitotic cell cycle progression in S" EXACT [PomBase:mah]
synonym: "abnormal mitotic S phase progression during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in S phase: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000059 ! abnormal mitotic cell cycle progression
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000611
name: mitotic cell cycle arrest in S phase
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested in S phase." [PomBase:mah]
comment: Cells arrested in S phase typically have more than 1C, but less than 2C, DNA content.
synonym: "abnormal mitotic cell cycle arrest in S phase" EXACT [PomBase:mah]
synonym: "mitotic cell cycle arrest in S phase during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in S phase: arrested" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000610 ! abnormal mitotic S phase progression
is_a: FYPO:0001028 ! abnormal cell cycle arrest in mitotic interphase
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000614
name: increased duration of mitotic S phase
alt_id: FYPO:0000612
alt_id: FYPO:0000613
def: "A cellular process phenotype in which the duration of progression through S phase of the mitotic cell cycle is longer than normal." [PomBase:mah]
synonym: "decreased rate of mitotic S phase progression" RELATED [PomBase:mah]
synonym: "delayed mitotic S phase progression" RELATED [PomBase:mah]
synonym: "delayed mitotic S phase progression during vegetative growth" RELATED [PomBase:mah]
synonym: "increased duration of mitotic S phase during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in S phase: decreased rate" RELATED [SGD:phenotype_annotation]
synonym: "mitotic cell cycle progression in S phase: delayed" EXACT [SGD:phenotype_annotation]
synonym: "mitotic cell cycle progression in S phase: increased duration" EXACT [SGD:phenotype_annotation]
synonym: "reduced rate of mitotic S phase progression" RELATED [PomBase:mah]
is_a: FYPO:0000610 ! abnormal mitotic S phase progression
is_a: FYPO:0001069 ! increased duration of mitotic cell cycle phase
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000615
name: decreased duration of mitotic S phase
def: "A cellular process phenotype in which the duration of progression through S phase of the mitotic cell cycle is shorter than normal." [PomBase:mah]
synonym: "decreased duration of mitotic S phase during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in S phase: increased rate" RELATED [SGD:phenotype_annotation]
synonym: "reduced duration of mitotic S phase" EXACT [PomBase:mah]
is_a: FYPO:0000610 ! abnormal mitotic S phase progression
is_a: FYPO:0001070 ! decreased duration of mitotic cell cycle phase
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000616
name: abnormal mitotic anaphase progression
def: "A cellular process phenotype in which progression through mitotic anaphase is abnormal." [PomBase:mah]
synonym: "abnormal mitotic anaphase progression during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal mitotic cell cycle progression in anaphase" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in anaphase: abnormal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000607 ! abnormal mitotic M phase progression
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000618
name: increased duration of mitotic anaphase
alt_id: FYPO:0000617
def: "A cellular process phenotype in which the duration of progression through the anaphase of mitosis is longer than normal." [PomBase:mah]
synonym: "delayed mitotic anaphase progression" RELATED [PomBase:mah]
synonym: "increased duration of mitotic anaphase during vegetative growth" EXACT [PomBase:mah]
synonym: "increased duration of mitotic anaphase progression" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in anaphase: delayed" RELATED [SGD:phenotype_annotation]
synonym: "mitotic cell cycle progression in anaphase: increased duration" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000616 ! abnormal mitotic anaphase progression
is_a: FYPO:0001069 ! increased duration of mitotic cell cycle phase
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000619
name: mitotic cell cycle arrest in anaphase
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested in anaphase." [PomBase:mah]
synonym: "abnormal mitotic cell cycle arrest in anaphase" EXACT [PomBase:mah]
synonym: "mitotic cell cycle arrest in anaphase during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in late anaphase: arrested" NARROW [SGD:phenotype_annotation]
is_a: FYPO:0000608 ! mitotic cell cycle arrest in M phase
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000620
name: mitotic cell cycle arrest in metaphase
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested in metaphase." [PomBase:mah]
synonym: "abnormal mitotic cell cycle arrest in metaphase" EXACT [PomBase:mah]
synonym: "mitotic cell cycle arrest in metaphase during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in metaphase: arrested" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000608 ! mitotic cell cycle arrest in M phase
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000621
name: delayed onset of mitotic metaphase
def: "A cellular process phenotype in which the onset of metaphase of mitosis is delayed." [PomBase:mah]
synonym: "delayed mitotic metaphase" EXACT [PomBase:mah]
synonym: "delayed onset of mitotic metaphase during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in metaphase: delayed" EXACT [SGD:phenotype_annotation]
synonym: "mitotic metaphase delay" EXACT [PomBase:mah]
is_a: FYPO:0000409 ! delayed cell cycle phase transition
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000622
name: mitotic cell cycle arrest in telophase
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested in telophase." [PomBase:mah]
synonym: "abnormal mitotic cell cycle arrest in telophase" EXACT [PomBase:mah]
synonym: "mitotic cell cycle arrest in telophase during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle progression in telophase: arrested" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000608 ! mitotic cell cycle arrest in M phase
created_by: midori
creation_date: 2011-08-16T10:03:01Z

[Term]
id: FYPO:0000623
name: abnormal positive regulation of transcription
def: "A transcription regulation phenotype in which any process of positive regulation of transcription is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. There may be enough evidence to support annotation to a more specific term such as 'abnormal transcriptional response to pheromone' (FYPO:0000984); if not, it is safer to annotate to 'increased transcription' (FYPO:0000780) or 'decreased transcription' (FYPO:0000781) rather than explicitly claiming that an effect on regulation was observed.
subset: qc_do_not_annotate
synonym: "abnormal activation of gene-specific transcription" RELATED [GO:0045893, PomBase:mah]
synonym: "abnormal activation of transcription, DNA-dependent" NARROW [GO:0045893, PomBase:mah]
synonym: "abnormal positive regulation of cellular transcription, DNA-dependent" EXACT [GO:0045893, PomBase:mah]
synonym: "abnormal positive regulation of gene-specific transcription" RELATED [GO:0045893, PomBase:mah]
synonym: "abnormal positive regulation of transcription, DNA-dependent" EXACT [GO:0045893, PomBase:mah]
synonym: "abnormal stimulation of gene-specific transcription" NARROW [GO:0045893, PomBase:mah]
synonym: "abnormal stimulation of transcription, DNA-dependent" NARROW [GO:0045893, PomBase:mah]
synonym: "abnormal up regulation of gene-specific transcription" RELATED [GO:0045893, PomBase:mah]
synonym: "abnormal up regulation of transcription, DNA-dependent" EXACT [GO:0045893, PomBase:mah]
synonym: "abnormal up-regulation of gene-specific transcription" RELATED [GO:0045893, PomBase:mah]
synonym: "abnormal up-regulation of transcription, DNA-dependent" EXACT [GO:0045893, PomBase:mah]
synonym: "abnormal upregulation of gene-specific transcription" RELATED [GO:0045893, PomBase:mah]
synonym: "abnormal upregulation of transcription, DNA-dependent" EXACT [GO:0045893, PomBase:mah]
is_a: FYPO:0000143 ! transcription regulation phenotype
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-08-19T03:38:05Z

[Term]
id: FYPO:0000624
name: abnormal negative regulation of transcription
def: "A transcription regulation phenotype in which any process of negative regulation of transcription is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. There may be enough evidence to support annotation to a more specific term such as 'abnormal chromatin silencing' (FYPO:0000144); if not, it is safer to annotate to 'increased transcription' (FYPO:0000780) or 'decreased transcription' (FYPO:0000781) rather than explicitly claiming that an effect on regulation was observed.
subset: qc_do_not_annotate
synonym: "abnormal down regulation of gene-specific transcription" RELATED [GO:0045892, PomBase:mah]
synonym: "abnormal down regulation of transcription, DNA-dependent" EXACT [GO:0045892, PomBase:mah]
synonym: "abnormal down-regulation of gene-specific transcription" RELATED [GO:0045892, PomBase:mah]
synonym: "abnormal down-regulation of transcription, DNA-dependent" EXACT [GO:0045892, PomBase:mah]
synonym: "abnormal downregulation of gene-specific transcription" RELATED [GO:0045892, PomBase:mah]
synonym: "abnormal downregulation of transcription, DNA-dependent" EXACT [GO:0045892, PomBase:mah]
synonym: "abnormal inhibition of gene-specific transcription" RELATED [GO:0045892, PomBase:mah]
synonym: "abnormal inhibition of transcription, DNA-dependent" NARROW [GO:0045892, PomBase:mah]
synonym: "abnormal negative regulation of cellular transcription, DNA-dependent" EXACT [GO:0045892, PomBase:mah]
synonym: "abnormal negative regulation of gene-specific transcription" RELATED [GO:0045892, PomBase:mah]
synonym: "abnormal negative regulation of transcription during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal negative regulation of transcription, DNA-dependent" EXACT [GO:0045892, PomBase:mah]
is_a: FYPO:0001335 ! transcription regulation phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-08-19T03:40:47Z

[Term]
id: FYPO:0000625
name: abnormal premeiotic DNA replication
def: "A cellular process phenotype in which premeiotic DNA replication is abnormal." [PomBase:mah]
synonym: "abnormal meiotic DNA replication" RELATED [GO:0006279, GOC:mah]
synonym: "abnormal meiotic DNA synthesis" RELATED [GO:0006279, GOC:mah]
synonym: "abnormal premeiotic DNA synthesis" RELATED [GO:0006279, GOC:mah]
is_a: FYPO:0000217 ! abnormal DNA replication
created_by: midori
creation_date: 2011-08-19T03:48:13Z

[Term]
id: FYPO:0000626
name: abnormal initiation of premeiotic DNA replication
def: "A cellular process phenotype in which the initiation of premeiotic DNA replication is abnormal." [PomBase:mah]
synonym: "abnormal initiation of meiotic DNA synthesis" RELATED [GO:0072691, GOC:mah]
synonym: "abnormal initiation of premeiotic DNA synthesis" RELATED [GO:0072691, GOC:mah]
synonym: "abnormal meiotic DNA replication initiation" RELATED [GO:0072691, GOC:mah]
synonym: "abnormal premeiotic DNA replication initiation" EXACT [GO:0072691, GOC:mah]
is_a: FYPO:0000176 ! abnormal DNA replication initiation
is_a: FYPO:0000625 ! abnormal premeiotic DNA replication
created_by: midori
creation_date: 2011-08-19T03:49:02Z

[Term]
id: FYPO:0000627
name: normal cellular process
def: "A phenotype in which a specific cellular process is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
is_a: FYPO:0000114 ! cellular process phenotype
is_a: FYPO:0000257 ! normal phenotype
created_by: midori
creation_date: 2011-08-19T04:05:16Z

[Term]
id: FYPO:0000628
name: abnormal cellular process
def: "A phenotype in which a specific cellular process is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
is_a: FYPO:0000114 ! cellular process phenotype
is_a: FYPO:0001985 ! abnormal phenotype
created_by: midori
creation_date: 2011-08-19T04:06:34Z

[Term]
id: FYPO:0000629
name: abnormal apoptosis
def: "A cellular process phenotype in which apoptosis is abnormal. Apoptosis is a form of cell death characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies." [GO:0006915, PomBase:mah]
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-08-19T04:10:09Z

[Term]
id: FYPO:0000630
name: abnormal biofilm formation
def: "A cellular process phenotype in which biofilm formation is abnormal." [PomBase:mah]
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2011-08-19T04:12:58Z

[Term]
id: FYPO:0000631
name: cell cycle phenotype
def: "A cellular process phenotype that affects progression of the mitotic or meiotic cell cycle, or regulation of cell cycle progression." [PomBase:mah]
synonym: "cell-division cycle phenotype" EXACT [GO:0007049, PomBase:mah]
synonym: "fission yeast cell cycle phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000114 ! cellular process phenotype
created_by: midori
creation_date: 2011-08-19T04:16:04Z

[Term]
id: FYPO:0000632
name: mitochondrial translation phenotype
def: "A cellular process phenotype that affects mitochondrial translation." [PomBase:mah]
synonym: "fission yeast mitochondrial translation phenotype" EXACT [PomBase:mah]
synonym: "mitochondrial translation phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000291 ! translation phenotype
created_by: midori
creation_date: 2011-08-23T04:58:17Z

[Term]
id: FYPO:0000633
name: sensitive to G418
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to G418. Cells stop growing (and may die) at a concentration of G418 that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to G418" EXACT [PomBase:mah]
synonym: "sensitive to G418 during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to Geneticin" EXACT [CHEBI:459363, PomBase:al]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-08-23T04:58:25Z

[Term]
id: FYPO:0000634
name: protein localization to centromere abolished
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the centromere of a chromosome does not occur." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abolished protein localization to centromere" EXACT [PomBase:mah]
synonym: "protein absent from centromere" RELATED [PomBase:mah]
synonym: "protein localisation to centromere abolished" EXACT [PomBase:mah]
synonym: "protein localisation to chromosome, centromeric region, abolished" EXACT [GO:0071459, PomBase:mah]
synonym: "protein localization to centromere abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "protein localization to chromosome, centric region, abolished" EXACT [GO:0071459, PomBase:mah]
synonym: "protein localization to chromosome, centromeric region, abolished" EXACT [GO:0071459, PomBase:mah]
is_a: FYPO:0001179 ! protein localization abolished during vegetative growth
created_by: midori
creation_date: 2011-08-23T04:58:31Z

[Term]
id: FYPO:0000635
name: growth auxotrophic for leucine
def: "Auxotrophy in which leucine is required for vegetative cell growth." [PomBase:mah]
synonym: "growth auxotrophic for leucine during vegetative growth" EXACT [PomBase:mah]
synonym: "leucine auxotrophy" EXACT [PomBase:mah]
is_a: FYPO:0000128 ! auxotrophy
created_by: midori
creation_date: 2011-08-23T05:17:07Z

[Term]
id: FYPO:0000636
name: increased cell population growth rate
def: "A cell population phenotype in which a cell population in the vegetative growth phase of the life cycle grows at a faster rate than normal." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "enhanced cell population growth" RELATED [PomBase:mah]
synonym: "fast cell population growth" EXACT [PomBase:mah]
synonym: "increased cell population growth rate during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001356 ! abnormal vegetative cell population growth
created_by: midori
creation_date: 2011-08-31T01:30:12Z

[Term]
id: FYPO:0000637
name: increased cell population growth rate on glucose carbon source
def: "A cell population phenotype in which a cell population in the vegetative growth phase of the life cycle grows at a faster rate than normal in a medium containing glucose as the carbon source." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "enhanced growth on glucose" RELATED [PomBase:mah]
synonym: "fast cell population growth on glucose carbon source" EXACT [PomBase:mah]
synonym: "increased vegetative cell population growth rate on glucose carbon source" EXACT [PomBase:mah]
is_a: FYPO:0000636 ! increased cell population growth rate
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-08-31T02:20:29Z

[Term]
id: FYPO:0000639
name: delayed septation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which septation takes place later than normal." [PomBase:al, PomBase:mah]
synonym: "delayed barrier septum formation involved in cell cycle cytokinesis" EXACT [PomBase:mah]
synonym: "delayed septation during vegetative growth" EXACT [PomBase:mah]
synonym: "delayed septum formation" BROAD [PomBase:mah]
is_a: FYPO:0000117 ! abnormal septation
is_a: FYPO:0000420 ! delayed cytokinesis
created_by: midori
creation_date: 2011-08-31T02:55:54Z

[Term]
id: FYPO:0000640
name: abnormal chromatin silencing at centromere central core
def: "A transcription regulation phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at the central core of the centromeric regions is abnormal." [PomBase:mah]
comment: Note that the centromere central core corresponds to SO:0001796.
synonym: "abnormal centromere central core chromatin silencing" EXACT [PomBase:mah]
synonym: "abnormal chromatin silencing at centromere central core during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal chromatin silencing at centromeric central core" EXACT [PomBase:mah]
synonym: "abnormal heterochromatic silencing at centromere central core" EXACT [PomBase:mah]
is_a: FYPO:0000146 ! abnormal chromatin silencing at centromere
created_by: midori
creation_date: 2011-09-12T03:33:40Z

[Term]
id: FYPO:0000641
name: abnormal chromosome organization
def: "A cellular process phenotype in which any process of chromosome organization is abnormal. Chromosome organization results in the assembly, arrangement of constituent parts, or disassembly of chromosomes." [GO:0051276, PomBase:mah]
comment: Consider annotating to 'abnormal chromosome morphology' (FYPO:0000848), but note that an abnormal chromosome organization process may, but does not necessarily, result in abnormal chromosome morphology.
synonym: "abnormal chromosome organisation" EXACT [PomBase:mah]
is_a: FYPO:0000335 ! abnormal cellular component organization
created_by: midori
creation_date: 2011-09-28T12:10:13Z

[Term]
id: FYPO:0000642
name: abnormal chromatin organization
def: "A cellular process phenotype in which any process of chromatin organization is abnormal. Chromatin organization results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin." [GO:0006325, PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "abnormal chromatin organisation" EXACT [PomBase:mah]
is_a: FYPO:0000641 ! abnormal chromosome organization
created_by: midori
creation_date: 2011-09-28T12:16:57Z

[Term]
id: FYPO:0000643
name: abnormal DNA integrity checkpoint
def: "A cell cycle checkpoint phenotype in which a DNA integrity checkpoint is abnormal. A DNA integrity checkpoint normally regulates cell cycle progression in response to changes in DNA structure. In a mutant, the checkpoint may fail to activate under appropriate conditions, or may occur to a greater or lesser extent than wild type under any specified set of conditions." [PomBase:mah]
synonym: "abnormal DNA integrity checkpoint activation" EXACT [PomBase:mah]
is_a: FYPO:0001704 ! abnormal cell cycle checkpoint
created_by: midori
creation_date: 2011-09-28T12:28:26Z

[Term]
id: FYPO:0000644
name: normal protein localization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cellular protein localization is normal." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "normal cellular protein localization" EXACT [PomBase:mah]
synonym: "normal protein localisation" EXACT [PomBase:mah]
synonym: "normal protein localization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001071 ! normal transport
created_by: midori
creation_date: 2011-10-05T04:52:48Z

[Term]
id: FYPO:0000645
name: small vegetative cell
def: "A cell morphology phenotype in which a vegetative cell has an abnormally low volume." [PomBase:mah]
is_a: FYPO:0000023 ! small cell
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
created_by: midori
creation_date: 2011-10-07T02:03:07Z

[Term]
id: FYPO:0000646
name: swollen vegetative cell
def: "A cell morphology phenotype in which a vegetatively growing cell has a larger volume than normal." [PomBase:mah]
is_a: FYPO:0000025 ! swollen cell
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
created_by: midori
creation_date: 2011-10-07T04:19:54Z

[Term]
id: FYPO:0000647
name: cell lysis
def: "An inviable phenotype in which a vegetative cell lyses, i.e. the plasma membrane ruptures and cytoplasm is lost. Note that in fission yeast cell lysis, the integrity of the cell wall is also compromised." [PomBase:mah]
synonym: "cell lysis during vegetative growth" EXACT [PomBase:mah]
synonym: "cytolysis" EXACT [PomBase:mah]
synonym: "inviable, lysed cell" EXACT [PomBase:mah]
is_a: FYPO:0001331 ! cellular process phenotype during vegetative growth
relationship: has_part FYPO:0000049 ! inviable cell
created_by: midori
creation_date: 2011-10-10T03:28:02Z

[Term]
id: FYPO:0000648
name: small viable vegetative cell
def: "A cell morphology phenotype in which a vegetatively growing cell is viable but has an abnormally low volume. Note that small viable cells result from a cell cycle size regulation defect." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'viable cell population' (FYPO:0002058) or one of its descendants.
synonym: "small viable cell during vegetative growth" EXACT [PomBase:mah]
synonym: "wee" EXACT [PomBase:jh, PomBase:mah]
is_a: FYPO:0000645 ! small vegetative cell
is_a: FYPO:0001491 ! viable vegetative cell
relationship: has_part FYPO:0000023 ! small cell
relationship: has_part FYPO:0001491 ! viable vegetative cell
created_by: midori
creation_date: 2011-10-13T12:06:45Z

[Term]
id: FYPO:0000650
name: increased septation index
def: "A cell population phenotype in which the septation index is higher than normal. The septation index is the proportion of the population undergoing septation at any given time, and is usually around 10% (varying between 7-15%) for wild type." [PomBase:mah, PomBase:vw]
synonym: "increased septation" RELATED [PomBase:mah]
synonym: "septated" RELATED [PomBase:vw]
is_a: FYPO:0000003 ! cell population phenotype
is_a: FYPO:0001985 ! abnormal phenotype
relationship: includes_cells_with_phenotype FYPO:0000651 ! increased duration of septation
created_by: midori
creation_date: 2011-10-13T12:34:42Z

[Term]
id: FYPO:0000651
name: increased duration of septation
alt_id: FYPO:0000649
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the duration of septation is increased." [PomBase:mah]
synonym: "increased barrier septum formation involved in cell cycle cytokinesis" RELATED [PomBase:mah]
synonym: "increased duration of barrier septum formation involved in cell cycle cytokinesis" EXACT [PomBase:mah]
synonym: "increased duration of septation during vegetative growth" EXACT [PomBase:mah]
synonym: "increased duration of septum formation" BROAD [PomBase:mah]
synonym: "increased septation" RELATED [PomBase:mah]
synonym: "increased septum formation" RELATED [PomBase:mah]
is_a: FYPO:0000117 ! abnormal septation
created_by: midori
creation_date: 2011-10-13T03:07:53Z

[Term]
id: FYPO:0000652
name: molecular function phenotype
def: "A phenotype that affects a molecular function such as binding or catalytic activity." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast molecular function phenotype" EXACT [PomBase:mah]
synonym: "molecular function phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000001 ! phenotype
created_by: midori
creation_date: 2011-11-11T10:42:36Z

[Term]
id: FYPO:0000653
name: DNA binding phenotype
def: "A phenotype that affects DNA binding." [PomBase:mah]
synonym: "fission yeast DNA binding phenotype" EXACT [PomBase:mah]
is_a: FYPO:0001092 ! binding phenotype
created_by: midori
creation_date: 2011-11-11T10:43:39Z

[Term]
id: FYPO:0000654
name: catalytic activity phenotype
def: "A phenotype that affects a catalytic activity." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "enzymatic activity phenotype" EXACT [PomBase:mah]
synonym: "fission yeast catalytic activity phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000652 ! molecular function phenotype
created_by: midori
creation_date: 2011-11-11T10:44:09Z

[Term]
id: FYPO:0000655
name: normal DNA binding
def: "A molecular function phenotype in which occurrence of DNA binding by a mutated gene product is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0000653 ! DNA binding phenotype
is_a: FYPO:0000706 ! normal molecular function
created_by: midori
creation_date: 2011-11-11T10:45:30Z

[Term]
id: FYPO:0000656
name: abnormal DNA binding
def: "A molecular function phenotype in which occurrence of DNA binding by a gene product is abnormal, when the gene product or the bound DNA sequence is mutated." [PomBase:mah]
is_a: FYPO:0000653 ! DNA binding phenotype
is_a: FYPO:0000707 ! abnormal molecular function
created_by: midori
creation_date: 2011-11-11T10:45:30Z

[Term]
id: FYPO:0000657
name: increased DNA binding
def: "A molecular function phenotype in which occurrence of DNA binding by a gene product is increased, when the gene product or the bound DNA sequence is mutated." [PomBase:mah]
is_a: FYPO:0000656 ! abnormal DNA binding
created_by: midori
creation_date: 2011-11-11T10:45:30Z

[Term]
id: FYPO:0000658
name: decreased DNA binding
def: "A molecular function phenotype in which occurrence of DNA binding by a gene product is decreased, when the gene product or the bound DNA sequence is mutated." [PomBase:mah]
synonym: "reduced DNA binding" EXACT [PomBase:mah]
is_a: FYPO:0000656 ! abnormal DNA binding
created_by: midori
creation_date: 2011-11-11T10:45:30Z

[Term]
id: FYPO:0000659
name: abolished DNA binding
def: "A molecular function phenotype in which DNA binding by a gene product does not occur, when the gene product or the bound DNA sequence is mutated." [PomBase:mah]
synonym: "DNA binding abolished" EXACT [PomBase:mah]
is_a: FYPO:0000656 ! abnormal DNA binding
created_by: midori
creation_date: 2011-11-11T10:45:30Z

[Term]
id: FYPO:0000660
name: normal catalytic activity
def: "A molecular function phenotype in which a the observed rate of a specified catalytic activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0000654 ! catalytic activity phenotype
is_a: FYPO:0000706 ! normal molecular function
created_by: midori
creation_date: 2011-11-11T10:46:28Z

[Term]
id: FYPO:0000661
name: abnormal catalytic activity
def: "A molecular function phenotype in which a the observed rate of a specified catalytic activity is abnormal." [PomBase:mah]
is_a: FYPO:0000654 ! catalytic activity phenotype
is_a: FYPO:0000707 ! abnormal molecular function
created_by: midori
creation_date: 2011-11-11T10:46:28Z

[Term]
id: FYPO:0000662
name: increased catalytic activity
def: "A molecular function phenotype in which a the observed rate of a specified catalytic activity is increased." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2011-11-11T10:46:28Z

[Term]
id: FYPO:0000663
name: decreased catalytic activity
def: "A molecular function phenotype in which a the observed rate of a specified catalytic activity is decreased." [PomBase:mah]
synonym: "reduced catalytic activity" EXACT [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2011-11-11T10:46:28Z

[Term]
id: FYPO:0000664
name: abolished catalytic activity
def: "A molecular function phenotype in which a specified catalytic activity is absent." [PomBase:mah]
synonym: "catalytic activity abolished" EXACT [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2011-11-11T10:46:28Z

[Term]
id: FYPO:0000665
name: normal peptidase activity
def: "A molecular function phenotype in which the observed rate of a peptidase activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal protease activity" EXACT [PomBase:mah]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2011-11-11T10:46:47Z

[Term]
id: FYPO:0000666
name: abnormal peptidase activity
def: "A molecular function phenotype in which the observed rate of a peptidase activity is abnormal." [PomBase:mah]
synonym: "abnormal protease activity" EXACT [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2011-11-11T10:46:47Z

[Term]
id: FYPO:0000667
name: increased peptidase activity
def: "A molecular function phenotype in which the observed rate of a peptidase activity is increased." [PomBase:mah]
synonym: "increased protease activity" EXACT [PomBase:mah]
is_a: FYPO:0000662 ! increased catalytic activity
is_a: FYPO:0000666 ! abnormal peptidase activity
created_by: midori
creation_date: 2011-11-11T10:46:47Z

[Term]
id: FYPO:0000668
name: decreased peptidase activity
def: "A molecular function phenotype in which the observed rate of a peptidase activity is decreased." [PomBase:mah]
synonym: "decreased protease activity" EXACT [PomBase:mah]
synonym: "reduced peptidase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0000666 ! abnormal peptidase activity
created_by: midori
creation_date: 2011-11-11T10:46:47Z

[Term]
id: FYPO:0000669
name: abolished peptidase activity
def: "A molecular function phenotype in which a peptidase activity is absent." [PomBase:mah]
synonym: "abolished protease activity" EXACT [PomBase:mah]
synonym: "peptidase activity abolished" EXACT [PomBase:mah]
is_a: FYPO:0000664 ! abolished catalytic activity
is_a: FYPO:0000666 ! abnormal peptidase activity
created_by: midori
creation_date: 2011-11-11T10:46:47Z

[Term]
id: FYPO:0000670
name: abnormal mitotic chromosome separation
def: "A cellular process phenotype in which mitotic chromosome separation is abnormal." [PomBase:mah]
synonym: "abnormal chromosome separation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal mitotic sister chromatid separation" EXACT [GO:0051306]
synonym: "aneuploidy" RELATED [PomBase:vw]
synonym: "mitotic chromosome nondisjunction" EXACT [PomBase:mah]
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
relationship: part_of FYPO:0000141 ! abnormal mitotic sister chromatid segregation
created_by: midori
creation_date: 2011-11-11T01:51:59Z

[Term]
id: FYPO:0000671
name: abnormal rDNA separation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic chromosome separation at the rDNA repeat regions is abnormal." [PomBase:mah]
synonym: "abnormal rDNA separation during mitosis" EXACT [PomBase:mah]
synonym: "abnormal rDNA separation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal segregation of nucleolar rDNA" RELATED [PomBase:mah]
is_a: FYPO:0000670 ! abnormal mitotic chromosome separation
created_by: midori
creation_date: 2011-11-11T01:59:59Z

[Term]
id: FYPO:0000672
name: normal cell morphology
def: "A cell phenotype characterized by normal cell morphology." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "cellular morphology: normal" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000136 ! cellular structure phenotype
is_a: FYPO:0000257 ! normal phenotype
created_by: midori
creation_date: 2011-11-11T02:51:12Z

[Term]
id: FYPO:0000673
name: normal septation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which septation is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal septation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2011-11-11T02:53:07Z

[Term]
id: FYPO:0000674
name: normal cell population growth at high temperature
def: "A cell population growth phenotype in which vegetative cells grow normally at a high temperature." [PomBase:mah]
synonym: "heat sensitivity: normal" RELATED [SGD:phenotype_annotation]
synonym: "normal growth at high temperature" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth at high temperature" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
is_a: FYPO:0002060 ! viable vegetative cell population
relationship: includes_cells_with_phenotype FYPO:0000282 ! viable cell at high temperature
created_by: midori
creation_date: 2011-11-11T02:55:04Z

[Term]
id: FYPO:0000675
name: abnormal protein targeting
def: "A transport phenotype observed in the vegetative growth phase of the life cycle in which protein targeting is abnormal." [PomBase:mah]
comment: Encompasses both targeting of proteins to a particular location where they are not normally found and decreased or no targeting of proteins normally found in the location. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein targeting during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000215 ! abnormal intracellular protein transport
created_by: midori
creation_date: 2011-11-11T03:24:12Z

[Term]
id: FYPO:0000676
name: abnormal protein targeting to vacuole
def: "A transport phenotype observed in the vegetative growth phase of the life cycle in which protein targeting to the vacuole is abnormal." [PomBase:mah]
comment: Encompasses both targeting of proteins to the vacuole where they are not normally found and decreased or no targeting of proteins normally found in the vacuole. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein targeting to vacuole during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal vacuolar protein sorting" EXACT [PomBase:mah]
is_a: FYPO:0000597 ! abnormal vacuolar transport
is_a: FYPO:0000675 ! abnormal protein targeting
created_by: midori
creation_date: 2011-11-11T03:25:01Z

[Term]
id: FYPO:0000677
name: abnormal protein targeting to prospore membrane
def: "A transport phenotype in which protein targeting to the prospore membrane is abnormal." [PomBase:mah]
comment: Encompasses both targeting of proteins to the prospore membrane where they are not normally found and decreased or no targeting of proteins normally found in the prospore membrane. We recommend noting which protein(s) were used in the assay when annotating to this term.
is_a: FYPO:0000675 ! abnormal protein targeting
created_by: midori
creation_date: 2011-11-29T05:16:27Z

[Term]
id: FYPO:0000678
name: chromosome nondisjunction at meiosis I
def: "A cellular process phenotype in which homologous chromosomes fail to segregate properly, or disjoin, during meiosis I." [PomBase:mah]
is_a: FYPO:0000925 ! unequal meiotic chromosome segregation
created_by: midori
creation_date: 2011-11-29T05:44:25Z

[Term]
id: FYPO:0000679
name: developmental process phenotype
def: "A phenotype that affects a developmental process." [PomBase:mah]
synonym: "fission yeast developmental process phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000300 ! biological process phenotype
created_by: midori
creation_date: 2011-11-29T06:02:16Z

[Term]
id: FYPO:0000680
name: abnormal ascus development
def: "A developmental process phenotype in which ascus development is abnormal." [PomBase:mah]
is_a: FYPO:0000679 ! developmental process phenotype
is_a: FYPO:0001985 ! abnormal phenotype
created_by: midori
creation_date: 2011-11-29T06:03:31Z

[Term]
id: FYPO:0000681
name: abnormal sporulation resulting in formation of two-spore ascus
def: "A sporulation phenotype that results in the formation of an ascus that has abnormal morphology and contains two diploid spores." [PMID:11156975, PomBase:mah, PomBase:vw]
synonym: "abnormal ascospore formation resulting in formation of two-spore ascus" EXACT [GO:0030437, PomBase:mah]
synonym: "abnormal sporulation resulting in formation of two-spore asci" EXACT [PomBase:mah]
is_a: FYPO:0000121 ! abnormal sporulation
created_by: midori
creation_date: 2011-12-01T01:29:02Z

[Term]
id: FYPO:0000682
name: abnormal regulation of molecular function
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which regulation of a molecular function is abnormal." [PomBase:mah]
synonym: "abnormal regulation of molecular function during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-12-01T01:43:05Z

[Term]
id: FYPO:0000683
name: constitutive catalytic activity
def: "A regulation phenotype in which the basal activity of an enzyme is increased relative to normal. Basal enzyme activity is the activity observed in the absence of a regulator. Abnormally elevated basal activity may or may not reach the levels observed in the normal activated state." [PomBase:al, PomBase:mah]
synonym: "constitutive catalytic activity during vegetative growth" EXACT [PomBase:mah]
synonym: "constitutive enzymatic activity" EXACT [PomBase:mah]
synonym: "constitutively active enzyme" RELATED [PomBase:mah]
is_a: FYPO:0000682 ! abnormal regulation of molecular function
created_by: midori
creation_date: 2011-12-01T01:51:53Z

[Term]
id: FYPO:0000684
name: decreased cell population growth on glycerol carbon source
def: "A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing glycerol as the carbon source." [PomBase:al, PomBase:mah]
comment: Note that trace amounts of another carbon source are usually required for S. pombe growth on glycerol; yeast extract-based rich medium supplies the trace substance, but minimal medium must be supplemented. It is therefore important to annotate the growth medium as an experimental condition when using this term. Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "decreased growth on glycerol carbon source" BROAD [PomBase:mah]
synonym: "decreased vegetative cell growth on glycerol carbon source" EXACT [PomBase:mah]
synonym: "reduced cell growth on glycerol carbon source" EXACT [PomBase:mah]
synonym: "slow cell growth on glycerol carbon source" NARROW [PomBase:mah]
is_a: FYPO:0001355 ! decreased vegetative cell population growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-12-01T04:41:03Z

[Term]
id: FYPO:0000685
name: transcriptional response to pheromone at decreased pheromone level
def: "A cellular response phenotype in which pheromone-responsive positive regulation of transcription occurs at a lower level of pheromone than normal." [PomBase:mah]
synonym: "increased sensitivity of positive regulation of transcription from RNA polymerase II promoter by pheromones to pheromone" RELATED [PomBase:mah]
synonym: "increased transcriptional response to pheromone" RELATED [PomBase:mah]
synonym: "sensitive to pheromone" RELATED [PomBase:al, PomBase:mah]
is_a: FYPO:0000623 ! abnormal positive regulation of transcription
is_a: FYPO:0000984 ! abnormal transcriptional response to pheromone
created_by: midori
creation_date: 2011-12-01T04:46:17Z

[Term]
id: FYPO:0000686
name: normal peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity
def: "A molecular function phenotype in which the observed rate of peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000687
name: abnormal peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity
def: "A molecular function phenotype in which the observed rate of peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000688
name: decreased peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity
def: "A molecular function phenotype in which the observed rate of peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity is decreased." [PomBase:mah]
synonym: "reduced peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0000687 ! abnormal peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000689
name: abnormal oxidoreductase activity
def: "A molecular function phenotype in which the observed rate of an oxidoreductase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000690
name: decreased oxidoreductase activity
def: "A molecular function phenotype in which the observed rate of an oxidoreductase activity is decreased." [PomBase:mah]
synonym: "reduced oxidoreductase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0000689 ! abnormal oxidoreductase activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000691
name: normal DNA-1,N6-ethenoadenine N-glycosylase activity
def: "A molecular function phenotype in which the observed rate of DNA-1,N6-ethenoadenine N-glycosylase activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000692
name: abnormal DNA-1,N6-ethenoadenine N-glycosylase activity
def: "A molecular function phenotype in which the observed rate of DNA-1,N6-ethenoadenine N-glycosylase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000693
name: decreased DNA-1,N6-ethenoadenine N-glycosylase activity
def: "A molecular function phenotype in which the observed rate of DNA-1,N6-ethenoadenine N-glycosylase activity is decreased." [PomBase:mah]
synonym: "reduced DNA-1,N6-ethenoadenine N-glycosylase activity" EXACT [PomBase:al]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0000692 ! abnormal DNA-1,N6-ethenoadenine N-glycosylase activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000694
name: abolished DNA-1,N6-ethenoadenine N-glycosylase activity
def: "A molecular function phenotype in which DNA-1,N6-ethenoadenine N-glycosylase activity is absent." [PomBase:mah]
synonym: "DNA-1,N6-ethenoadenine N-glycosylase activity abolished" EXACT [PomBase:mah]
is_a: FYPO:0000664 ! abolished catalytic activity
is_a: FYPO:0000692 ! abnormal DNA-1,N6-ethenoadenine N-glycosylase activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000695
name: increased DNA-1,N6-ethenoadenine N-glycosylase activity
def: "A molecular function phenotype in which the observed rate of DNA-1,N6-ethenoadenine N-glycosylase activity is increased." [PomBase:mah]
is_a: FYPO:0000662 ! increased catalytic activity
is_a: FYPO:0000692 ! abnormal DNA-1,N6-ethenoadenine N-glycosylase activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000696
name: normal DNA-7-methylguanine glycosylase activity
def: "A molecular function phenotype in which the observed rate of DNA-7-methylguanine glycosylase activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000697
name: abnormal DNA-7-methylguanine glycosylase activity
def: "A molecular function phenotype in which the observed rate of DNA-7-methylguanine glycosylase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000698
name: decreased DNA-7-methylguanine glycosylase activity
def: "A molecular function phenotype in which the observed rate of DNA-7-methylguanine glycosylase activity is decreased." [PomBase:mah]
synonym: "reduced DNA-7-methylguanine glycosylase activity" EXACT [PomBase:al]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0000697 ! abnormal DNA-7-methylguanine glycosylase activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000699
name: abolished DNA-7-methylguanine glycosylase activity
def: "A molecular function phenotype in which DNA-7-methylguanine glycosylase activity is absent." [PomBase:mah]
synonym: "DNA-7-methylguanine glycosylase activity abolished" EXACT [PomBase:mah]
is_a: FYPO:0000664 ! abolished catalytic activity
is_a: FYPO:0000697 ! abnormal DNA-7-methylguanine glycosylase activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000700
name: increased DNA-7-methylguanine glycosylase activity
def: "A molecular function phenotype in which the observed rate of DNA-7-methylguanine glycosylase activity is increased." [PomBase:mah]
is_a: FYPO:0000662 ! increased catalytic activity
is_a: FYPO:0000697 ! abnormal DNA-7-methylguanine glycosylase activity
created_by: midori
creation_date: 2011-12-01T05:15:00Z

[Term]
id: FYPO:0000701
name: abolished DNA damage checkpoint override in response to caffeine
def: "A cellular response phenotype in which caffeine does not override the DNA damage checkpoint (as it does in wild type cells), allowing mitotic cell cycle arrest to occur." [PMID:10224243, PomBase:mah]
synonym: "caffeine-mediated DNA damage checkpoint override abolished" EXACT [GOC:mah, GOC:vw]
synonym: "DNA damage checkpoint override in response to caffeine abolished" EXACT [PomBase:mah]
synonym: "DNA damage checkpoint override in response to caffeine abolished during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000207 ! abnormal cellular response to caffeine
is_a: FYPO:0001704 ! abnormal cell cycle checkpoint
created_by: midori
creation_date: 2011-12-05T01:59:12Z

[Term]
id: FYPO:0000702
name: protein binding phenotype
def: "A phenotype that protein affects the binding of one protein to another." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast protein binding phenotype" EXACT [PomBase:mah]
is_a: FYPO:0001092 ! binding phenotype
created_by: midori
creation_date: 2011-12-05T02:24:49Z

[Term]
id: FYPO:0000703
name: normal protein binding
def: "A molecular function phenotype in which the binding of one protein to another is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
comment: This term can be used for any protein-protein interaction that is tested in a mutant, whether or not the mutated gene product is one of the interacting proteins. We recommend noting which proteins were used in the assay when annotating to this term.
synonym: "normal protein-protein interaction" EXACT [PomBase:mah]
is_a: FYPO:0000702 ! protein binding phenotype
is_a: FYPO:0000706 ! normal molecular function
created_by: midori
creation_date: 2011-12-05T02:25:15Z

[Term]
id: FYPO:0000704
name: abnormal protein binding
def: "A molecular function phenotype in which the binding of one protein to another is abnormal." [PomBase:mah]
comment: This term can be used for any protein-protein interaction that is affected by a mutation, whether or not the mutated gene product is one of the interacting proteins. We recommend noting which proteins were used in the assay when annotating to this term.
synonym: "abnormal protein-protein interaction" EXACT [PomBase:mah]
is_a: FYPO:0000702 ! protein binding phenotype
is_a: FYPO:0000707 ! abnormal molecular function
created_by: midori
creation_date: 2011-12-05T02:25:58Z

[Term]
id: FYPO:0000705
name: abolished protein binding
def: "A molecular function phenotype in which the binding of one protein to another does not occur." [PomBase:mah]
comment: This term can be used for any protein-protein interaction that is affected by a mutation, whether or not the mutated gene product is one of the interacting proteins. We recommend noting which proteins were used in the assay when annotating to this term.
synonym: "abolished protein-protein interaction" EXACT [PomBase:mah]
synonym: "protein binding abolished" EXACT [PomBase:mah]
is_a: FYPO:0000704 ! abnormal protein binding
created_by: midori
creation_date: 2011-12-05T02:26:17Z

[Term]
id: FYPO:0000706
name: normal molecular function
def: "A phenotype in which a specific molecular function is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0000257 ! normal phenotype
is_a: FYPO:0000652 ! molecular function phenotype
created_by: midori
creation_date: 2011-12-05T03:06:23Z

[Term]
id: FYPO:0000707
name: abnormal molecular function
def: "A phenotype in which a specific molecular function is abnormal." [PomBase:mah]
is_a: FYPO:0000652 ! molecular function phenotype
is_a: FYPO:0001985 ! abnormal phenotype
created_by: midori
creation_date: 2011-12-05T03:09:24Z

[Term]
id: FYPO:0000708
name: decreased mating efficiency
def: "A biological process phenotype in which the observed mating efficiency is lower than normal." [PMID:15300681, PMID:16598689, PomBase:al, PomBase:mah]
comment: Note that mating efficiency is often measured by counting zygotes plus asci, sometimes also including spores, so a change in measured mating efficiency may reflect a change in conjugation frequency (see FYPO:0000031 and its descendants), a change in sporulation (see FYPO:0000121 and its descendants), or both. For this reason, this term is not a child of 'mating phenotype' (FYPO:0000031).
synonym: "mating efficiency: decreased" EXACT [SGD:phenotype_annotation]
synonym: "reduced mating efficiency" EXACT [PomBase:mah]
is_a: FYPO:0000300 ! biological process phenotype
created_by: midori
creation_date: 2011-12-05T04:26:20Z

[Term]
id: FYPO:0000709
name: decreased cell population growth during nitrogen starvation
def: "A cell growth phenotype in which cell population growth is decreased relative to normal under nitrogen starvation conditions, such as in nitrogen-deficient minimal medium." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "decreased cell population growth in response to nitrogen starvation" EXACT [PomBase:mah]
synonym: "reduced cell population growth during nitrogen starvation" RELATED [PomBase:mah]
synonym: "slow cell population growth during nitrogen starvation" NARROW [PomBase:mah]
synonym: "slow cell population growth in nitrogen-deficient minimal medium" RELATED [PomBase:al, PomBase:mah]
synonym: "slow growth during nitrogen starvation" BROAD [PomBase:mah]
is_a: FYPO:0000046 ! decreased cell population growth
is_a: FYPO:0000152 ! abnormal cellular response to nitrogen starvation
created_by: midori
creation_date: 2011-12-05T04:43:53Z

[Term]
id: FYPO:0000710
name: abnormal cell cycle arrest in response to nitrogen starvation
def: "A cellular process phenotype in which cell cycle arrest in response to nitrogen starvation, which normally occurs in G1 phase, is abnormal." [PomBase:mah]
is_a: FYPO:0000152 ! abnormal cellular response to nitrogen starvation
is_a: FYPO:0001026 ! abnormal occurrence of normal cell cycle arrest
created_by: midori
creation_date: 2011-12-06T12:15:03Z

[Term]
id: FYPO:0000711
name: decreased cell cycle arrest in response to nitrogen starvation
def: "A cellular process phenotype in which the occurrence of cell cycle arrest in response to nitrogen starvation is decreased." [PomBase:mah]
synonym: "reduced cell cycle arrest in response to nitrogen starvation" EXACT [PomBase:mah]
is_a: FYPO:0000710 ! abnormal cell cycle arrest in response to nitrogen starvation
created_by: midori
creation_date: 2011-12-06T12:15:32Z

[Term]
id: FYPO:0000712
name: delayed cell cycle arrest in response to nitrogen starvation
def: "A cellular process phenotype in which the occurrence of cell cycle arrest in response to nitrogen starvation is delayed." [PomBase:mah]
is_a: FYPO:0000710 ! abnormal cell cycle arrest in response to nitrogen starvation
created_by: midori
creation_date: 2011-12-06T12:16:53Z

[Term]
id: FYPO:0000713
name: abnormal cellular response to starvation
def: "A stress response phenotype in which the response to starvation for one or more nutrients is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
is_a: FYPO:0000162 ! abnormal cellular response to stress
created_by: midori
creation_date: 2011-12-06T12:25:40Z

[Term]
id: FYPO:0000714
name: sensitive to leptomycin B
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to leptomycin B. Cells stop growing (and may die) at a concentration of leptomycin B that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to leptomycin B" EXACT [PomBase:mah]
synonym: "sensitive to leptomycin B during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to LMB" EXACT [CHEBI:52646, PomBase:al]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-12-06T12:31:38Z

[Term]
id: FYPO:0000715
name: sensitive to K-252a
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to K-252a. Cells stop growing (and may die) at a concentration of K-252a that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to K-252a" EXACT [PomBase:mah]
synonym: "sensitive to K-252a during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-12-06T12:31:38Z

[Term]
id: FYPO:0000716
name: sensitive to valinomycin
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to valinomycin. Cells stop growing (and may die) at a concentration of valinomycin that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to valinomycin" EXACT [PomBase:mah]
synonym: "sensitive to valinomycin during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-12-06T12:31:38Z

[Term]
id: FYPO:0000717
name: sensitive to actinomycin D
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to actinomycin D. Cells stop growing (and may die) at a concentration of actinomycin D that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to actinomycin D" EXACT [PomBase:mah]
synonym: "sensitive to actinomycin D during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-12-06T12:31:38Z

[Term]
id: FYPO:0000718
name: sensitive to trisodium vanadate
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to trisodium vanadate (also known as sodium orthovanadate). Cells stop growing (and may die) at a concentration of trisodium vanadate that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to trisodium vanadate" EXACT [PomBase:mah]
synonym: "sensitive to sodium orthovanadate" EXACT [CHEBI:35607, PomBase:al]
synonym: "sensitive to trisodium vanadate during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2011-12-06T12:31:38Z

[Term]
id: FYPO:0000719
name: normal fatty acid synthase activity
def: "A molecular function phenotype in which the observed rate of fatty acid synthase activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal FAS activity" EXACT [PomBase:al, PomBase:mah]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2011-12-06T01:43:30Z

[Term]
id: FYPO:0000720
name: abnormal fatty acid synthase activity
def: "A molecular function phenotype in which the observed rate of fatty acid synthase activity is abnormal." [PomBase:mah]
synonym: "abnormal FAS activity" EXACT [PomBase:al, PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2011-12-06T01:57:58Z

[Term]
id: FYPO:0000721
name: abnormal cellular response to pH
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to a pH stimulus is abnormal." [PomBase:mah]
synonym: "abnormal cellular response to pH during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001342 ! cellular response phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2011-12-06T02:45:18Z

[Term]
id: FYPO:0000722
name: sensitive to acidity
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to acidic pH. Cells stop growing (and may die) at a pH that allows wild type cells to grow." [PomBase:mah]
comment: In chemistry, acid pH is below 7.0. This term, however, is most useful for annotating phenotypes observed at any pH lower than that of standard fission yeast media, about 5.8. Also see 'sensitive to low pH' (FYPO:0001989).
synonym: "acid pH resistance: decreased" EXACT [SGD:phenotype_annotation]
synonym: "hypersensitive to acidity" EXACT [PomBase:mah]
synonym: "sensitive to acidity during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000721 ! abnormal cellular response to pH
created_by: midori
creation_date: 2011-12-06T02:47:00Z

[Term]
id: FYPO:0000723
name: sensitive to alkalinity
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to alkaline pH. Cells stop growing (and may die) at a pH that allows wild type cells to grow." [PomBase:mah]
comment: In chemistry, alkaline pH is over 7.0. This term, however, is most useful for annotating phenotypes observed at any pH higher than that of standard fission yeast media, about 5.8. Also see 'sensitive to high pH' (FYPO:0001987).
synonym: "alkaline pH resistance: decreased" EXACT [SGD:phenotype_annotation]
synonym: "hypersensitive to alkalinity" EXACT [PomBase:mah]
synonym: "sensitive to alkalinity during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000721 ! abnormal cellular response to pH
created_by: midori
creation_date: 2011-12-06T02:48:18Z

[Term]
id: FYPO:0000724
name: resistance to N-methyl-N'-nitro-N-nitrosoguanidine
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of N-methyl-N'-nitro-N-nitrosoguanidine than normal." [PomBase:mah]
synonym: "resistance to methylnitronitrosoguanidine" EXACT [CHEBI:21759]
synonym: "resistance to N-methyl-N'-nitro-N-nitrosoguanidine during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to MNNG" EXACT [CHEBI:21759]
synonym: "resistant to N-methyl-N'-nitro-N-nitrosoguanidine" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-12-06T04:17:30Z

[Term]
id: FYPO:0000725
name: resistance to methyl methanesulfonate
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of methyl methanesulfonate than normal." [PomBase:mah]
synonym: "resistance to methyl methanesulfonate during vegetative growth" EXACT [PomBase:mah]
synonym: "resistance to methyl methanesulphonate" EXACT [PomBase:mah]
synonym: "resistance to MMS" EXACT [PomBase:mah]
synonym: "resistant to methyl methanesulfonate" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2011-12-07T11:28:32Z

[Term]
id: FYPO:0000726
name: sensitive to oxidative stress
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to oxidative stress." [PomBase:mah]
synonym: "hypersensitive to oxidative stress" EXACT [PomBase:mah]
synonym: "oxidative stress resistance: decreased" EXACT [SGD:phenotype_annotation]
synonym: "sensitive to oxidative stress during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000304 ! sensitive to stress
is_a: FYPO:0001340 ! abnormal cellular response to oxidative stress during vegetative growth
created_by: midori
creation_date: 2011-12-07T01:17:37Z

[Term]
id: FYPO:0000727
name: abnormal actin filament organization
def: "A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which the assembly and distribution of cytoskeletal structures comprising actin filaments does not occur normally." [GO:0007015, PomBase:mah]
synonym: "abnormal actin filament organisation" EXACT [PomBase:mah]
synonym: "abnormal actin filament organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000801 ! abnormal actin cytoskeleton organization
created_by: midori
creation_date: 2011-12-07T02:53:31Z

[Term]
id: FYPO:0000728
name: abnormal actin cortical patch assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch assembly is abnormal." [PomBase:mah]
synonym: "abnormal actin cortical patch assembly during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000790 ! abnormal actin cortical patch organization
created_by: midori
creation_date: 2011-12-07T03:02:33Z

[Term]
id: FYPO:0000729
name: delayed actomyosin contractile ring assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which contractile ring assembly is delayed." [PomBase:mah]
synonym: "delayed actomyosin contractile ring assembly during vegetative growth" EXACT [PomBase:mah]
synonym: "delayed actomyosin contractile ring formation" RELATED [GO:0000915, PomBase:vw]
synonym: "delayed contractile ring assembly" EXACT [PomBase:mah]
synonym: "delayed cytokinetic ring assembly" RELATED [PomBase:vw]
synonym: "delayed cytokinetic ring formation" RELATED [PomBase:vw]
is_a: FYPO:0000161 ! abnormal actomyosin contractile ring assembly
is_a: FYPO:0000420 ! delayed cytokinesis
created_by: midori
creation_date: 2011-12-07T04:50:03Z

[Term]
id: FYPO:0000730
name: long spindle
def: "A spindle phenotype in which the spindle is longer than normal." [PomBase:mah]
synonym: "long spindles" EXACT [PomBase:mah]
is_a: FYPO:0000120 ! abnormal spindle
created_by: midori
creation_date: 2011-12-07T04:51:57Z

[Term]
id: FYPO:0000731
name: abnormal protein localization to medial cortex during vegetative growth
def: "A cell phenotype in which the localization of a protein to the medial cortex is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found at the medial cortex and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to medial cortex during vegetative growth" EXACT [GO:0071574, PomBase:mah]
synonym: "abnormal protein localization to medial ring during vegetative growth" EXACT [GO:0031097, GO:0071574]
is_a: FYPO:0000928 ! abnormal protein localization to cell cortex
is_a: FYPO:0001373 ! abnormal protein localization to medial cortex
created_by: midori
creation_date: 2011-12-07T05:16:57Z

[Term]
id: FYPO:0000732
name: short mitotic spindle
def: "A spindle phenotype in which the mitotic spindle is shorter than normal." [PomBase:mah]
comment: Note that short mitotic spindles are usually not parallel to the long axis of the cell, because short spindle formation takes place before spindle orientation is established (see GO:0000132).
synonym: "short bipolar mitotic spindle" EXACT [PomBase:vw]
synonym: "short mitotic spindle during vegetative growth" EXACT [PomBase:mah]
synonym: "short mitotic spindles" EXACT [PomBase:mah]
is_a: FYPO:0000130 ! short spindle
is_a: FYPO:0001574 ! abnormal bipolar mitotic spindle
created_by: midori
creation_date: 2012-01-11T11:30:01Z

[Term]
id: FYPO:0000733
name: long mitotic spindle
def: "A spindle phenotype in which the mitotic spindle is longer than normal." [PomBase:mah]
synonym: "long bipolar mitotic spindle" EXACT [PomBase:vw]
synonym: "long mitotic spindle during vegetative growth" EXACT [PomBase:mah]
synonym: "long mitotic spindles" EXACT [PomBase:mah]
is_a: FYPO:0000730 ! long spindle
is_a: FYPO:0001574 ! abnormal bipolar mitotic spindle
created_by: midori
creation_date: 2012-01-11T11:30:01Z

[Term]
id: FYPO:0000734
name: abnormal meiotic spindle
def: "A cellular structure phenotype in which the structure of the meiotic spindle is abnormal." [PomBase:mah]
is_a: FYPO:0000120 ! abnormal spindle
created_by: midori
creation_date: 2012-01-11T11:30:13Z

[Term]
id: FYPO:0000735
name: short meiotic spindle
def: "A spindle phenotype in which the meiotic spindle is shorter than normal." [PomBase:mah]
synonym: "short meiotic spindles" EXACT [PomBase:mah]
is_a: FYPO:0000130 ! short spindle
is_a: FYPO:0000734 ! abnormal meiotic spindle
created_by: midori
creation_date: 2012-01-11T11:30:48Z

[Term]
id: FYPO:0000736
name: long meiotic spindle
def: "A spindle phenotype in which the meiotic spindle is longer than normal." [PomBase:mah]
synonym: "long meiotic spindles" EXACT [PomBase:mah]
is_a: FYPO:0000730 ! long spindle
is_a: FYPO:0000734 ! abnormal meiotic spindle
created_by: midori
creation_date: 2012-01-11T11:30:48Z

[Term]
id: FYPO:0000737
name: abnormal meiotic spindle assembly
def: "A cellular process phenotype in which assembly of the meiotic spindle is abnormal." [PomBase:mah]
synonym: "abnormal spindle assembly involved in meiosis" EXACT [PomBase:mah]
is_a: FYPO:0000051 ! abnormal meiosis
is_a: FYPO:0000119 ! abnormal spindle assembly
relationship: results_in_formation_of FYPO:0000734 ! abnormal meiotic spindle
created_by: midori
creation_date: 2012-01-11T11:42:55Z

[Term]
id: FYPO:0000739
name: cellular pigment accumulation phenotype
def: "A cellular process phenotype that affects the occurrence of pigment accumulation in a cell." [PomBase:mah]
comment: Note that this term refers to GO:0033059 'cellular pigmentation', rather than GO:0043482 'cellular pigment accumulation', because GO:0043482 has paths to 'response to stimulus' in GO.
synonym: "cellular pigment accumulation phenotype during vegetative growth" EXACT [PomBase:mah]
synonym: "fission yeast cellular pigment accumulation phenotype" EXACT [PomBase:mah]
is_a: FYPO:0001331 ! cellular process phenotype during vegetative growth
created_by: midori
creation_date: 2012-01-11T12:21:14Z

[Term]
id: FYPO:0000740
name: normal cellular pigment accumulation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of cellular pigment accumulation is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
comment: Note that normal cells do not accumulate detectable levels of any pigment; also note that this term refers to GO:0033059 'cellular pigmentation', rather than GO:0043482 'cellular pigment accumulation', because GO:0043482 has paths to 'response to stimulus' in GO.
synonym: "normal cellular pigment accumulation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000739 ! cellular pigment accumulation phenotype
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2012-01-11T12:27:26Z

[Term]
id: FYPO:0000741
name: increased cellular pigment accumulation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of cellular pigment accumulation is increased." [PomBase:mah]
comment: Note that normal cells do not accumulate detectable levels of any pigment; for this reason, FYPO does not include separate terms for 'increased' and 'abnormal' pigment accumulation. Also note that pigment accumulates in the vacuole. This term refers to GO:0033059 'cellular pigmentation', rather than GO:0043482 'cellular pigment accumulation', because GO:0043482 has paths to 'response to stimulus' in GO.
synonym: "abnormal cellular pigment accumulation" EXACT [PomBase:mah]
synonym: "altered colony color" RELATED [PomBase:al, PomBase:mah]
synonym: "altered colony colour" RELATED [PomBase:al, PomBase:mah]
synonym: "increased cellular pigment accumulation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000739 ! cellular pigment accumulation phenotype
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-01-11T12:29:34Z

[Term]
id: FYPO:0000742
name: abnormal protein localization to actin cortical patch
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to actin cortical patches is abnormal." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found in actin cortical patches and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to actin cortical patch" EXACT [PomBase:mah]
synonym: "abnormal protein localization to actin cortical patch during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
created_by: midori
creation_date: 2012-01-11T12:45:30Z

[Term]
id: FYPO:0000743
name: abnormal actin cortical patch internalization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch internalization is abnormal." [PomBase:mah]
synonym: "abnormal actin cortical patch internalisation" EXACT [PomBase:mah]
synonym: "abnormal actin cortical patch internalization during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal actin patch internalization" EXACT [PomBase:vw]
is_a: FYPO:0000190 ! abnormal actin cortical patch localization
is_a: FYPO:0000790 ! abnormal actin cortical patch organization
created_by: midori
creation_date: 2012-01-11T12:50:31Z

[Term]
id: FYPO:0000744
name: normal protein localization to actin cortical patch
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to actin cortical patches is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "normal protein localisation to actin cortical patch" EXACT [PomBase:mah]
synonym: "normal protein localization to actin cortical patch during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000644 ! normal protein localization
created_by: midori
creation_date: 2012-01-11T01:47:11Z

[Term]
id: FYPO:0000745
name: delayed actin cortical patch internalization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch internalization is delayed." [PomBase:mah]
synonym: "delayed abnormal actin cortical patch internalization during vegetative growth" EXACT [PomBase:mah]
synonym: "delayed actin cortical patch internalisation" EXACT [PomBase:mah]
is_a: FYPO:0000743 ! abnormal actin cortical patch internalization
created_by: midori
creation_date: 2012-01-11T01:57:25Z

[Term]
id: FYPO:0000746
name: abolished actin cortical patch internalization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch internalization does not occur." [PomBase:mah]
synonym: "abolished actin cortical patch internalisation" EXACT [PomBase:mah]
synonym: "abolished actin cortical patch internalization during vegetative growth" EXACT [PomBase:mah]
synonym: "actin cortical patch internalization abolished" EXACT [PomBase:mah]
is_a: FYPO:0000743 ! abnormal actin cortical patch internalization
created_by: midori
creation_date: 2012-01-11T01:57:40Z

[Term]
id: FYPO:0000747
name: growth auxotrophic for adenine
def: "Auxotrophy in which adenine is required for vegetative cell growth." [PomBase:mah]
synonym: "adenine auxotrophy" EXACT [PomBase:mah]
synonym: "growth auxotrophic for adenine during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000128 ! auxotrophy
created_by: midori
creation_date: 2012-01-11T01:59:50Z

[Term]
id: FYPO:0000748
name: sensitive to mercury
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to mercury ions. Cells stop growing (and may die) at a concentration of mercury ions that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to mercury" EXACT [PomBase:mah]
synonym: "sensitive to mercury during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to mercury ions" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-01-11T02:03:34Z

[Term]
id: FYPO:0000749
name: sensitive to selenite ion
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to selenite ((SeO3)2-) ions. Cells stop growing (and may die) at a concentration of selenite ions that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to selenite ion" EXACT [PomBase:mah]
synonym: "sensitive to selenite ion during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to selenite ions" EXACT [PomBase:mah]
synonym: "sensitive to selenium" RELATED [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-01-11T02:09:20Z

[Term]
id: FYPO:0000750
name: sensitive to silver
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to silver ions. Cells stop growing (and may die) at a concentration of silver ions that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to silver" EXACT [PomBase:mah]
synonym: "sensitive to silver during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to silver ions" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-01-11T02:23:17Z

[Term]
id: FYPO:0000751
name: sensitive to nickel
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to nickel ions. Cells stop growing (and may die) at a concentration of nickel ions that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to nickel" EXACT [PomBase:mah]
synonym: "sensitive to nickel during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to nickel ions" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-01-11T02:23:37Z

[Term]
id: FYPO:0000752
name: resistance to selenate
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of selenate ions than normal." [PomBase:mah]
synonym: "resistance to selenate during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to selenate" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-01-11T02:24:43Z

[Term]
id: FYPO:0000753
name: normal glutathione gamma-glutamylcysteinyltransferase activity
def: "A molecular function phenotype in which the observed rate of glutathione gamma-glutamylcysteinyltransferase activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2012-01-11T02:33:09Z

[Term]
id: FYPO:0000754
name: abnormal glutathione gamma-glutamylcysteinyltransferase activity
def: "A molecular function phenotype in which the observed rate of glutathione gamma-glutamylcysteinyltransferase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-01-11T02:34:18Z

[Term]
id: FYPO:0000755
name: decreased glutathione gamma-glutamylcysteinyltransferase activity
def: "A molecular function phenotype in which the observed rate of glutathione gamma-glutamylcysteinyltransferase activity is decreased." [PomBase:mah]
synonym: "reduced glutathione gamma-glutamylcysteinyltransferase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0000754 ! abnormal glutathione gamma-glutamylcysteinyltransferase activity
created_by: midori
creation_date: 2012-01-11T02:34:31Z

[Term]
id: FYPO:0000756
name: sensitive to bafilomycin A1
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to bafilomycin A1. Cells stop growing (and may die) at a concentration of bafilomycin A1 that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to bafilomycin A1" EXACT [PomBase:mah]
synonym: "sensitive to bafilomycin A" RELATED [PomBase:mah]
synonym: "sensitive to bafilomycin A1 during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-01-12T11:24:11Z

[Term]
id: FYPO:0000757
name: sensitive to nigericin
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to nigericin. Cells stop growing (and may die) at a concentration of nigericin that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to nigericin" EXACT [PomBase:mah]
synonym: "sensitive to nigericin during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-01-12T11:25:08Z

[Term]
id: FYPO:0000758
name: sensitive to bismuth
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to bismuth. Cells stop growing (and may die) at a concentration of bismuth that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to bismuth" EXACT [PomBase:mah]
synonym: "sensitive to bismuth during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-01-18T03:00:13Z

[Term]
id: FYPO:0000759
name: sensitive to lead
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to lead ions. Cells stop growing (and may die) at a concentration of lead ions that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to lead" EXACT [PomBase:mah]
synonym: "sensitive to lead during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to lead ions" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-01-18T03:00:32Z

[Term]
id: FYPO:0000760
name: normal conjugation
def: "A cellular process phenotype in which conjugation is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal conjugation frequency" NARROW [PomBase:mah]
synonym: "normal conjugation with cellular fusion" EXACT [PomBase:mah]
synonym: "normal zygote formation" RELATED [PomBase:mah]
is_a: FYPO:0000301 ! mating phenotype
is_a: FYPO:0000627 ! normal cellular process
created_by: midori
creation_date: 2012-01-18T03:02:59Z

[Term]
id: FYPO:0000761
name: increased conjugation frequency
def: "A conjugation phenotype in which conjugation occurs more frequently than normal." [PomBase:mah]
comment: Note that this term refers specifically to conjugation, whereas experiments that measure mating efficiency often do so by counting zygotes plus asci, sometimes also including spores. For such experiments, we recommend using 'increased mating efficiency' (FYPO:0001043).
synonym: "increased conjugation efficiency" EXACT [PomBase:mah]
synonym: "increased occurrence of conjugation" EXACT [PomBase:mah]
synonym: "increased zygote formation" RELATED [PomBase:mah]
is_a: FYPO:0000031 ! abnormal conjugation
created_by: midori
creation_date: 2012-01-18T03:03:19Z

[Term]
id: FYPO:0000762
name: protein accumulation
def: "A localization phenotype observed in the vegetative growth phase of the life cycle in which specific proteins abnormally accumulate in the cell, or in a part of the cell such as within an organelle." [PomBase:mah]
synonym: "protein accumulation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
created_by: midori
creation_date: 2012-02-09T02:50:56Z

[Term]
id: FYPO:0000763
name: resistance to cadmium
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of cadmium ions than normal." [PomBase:mah]
synonym: "resistance to cadmium during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-02-09T03:40:24Z

[Term]
id: FYPO:0000764
name: resistance to cycloheximide
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of selenate ions than normal." [PomBase:mah]
synonym: "resistance to cycloheximide during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-02-09T03:40:24Z

[Term]
id: FYPO:0000765
name: resistance to leptomycin B
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of leptomycin B than normal." [PomBase:mah]
synonym: "resistance to leptomycin B during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-02-09T03:40:24Z

[Term]
id: FYPO:0000766
name: resistance to N-ethylmaleimide
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of selenate ions than normal." [PomBase:mah]
synonym: "resistance to N-ethylmaleimide during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-02-09T03:40:24Z

[Term]
id: FYPO:0000767
name: resistance to staurosporine
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of selenate ions than normal." [PomBase:mah]
synonym: "resistance to staurosporine during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-02-09T03:40:24Z

[Term]
id: FYPO:0000768
name: resistance to valinomycin
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of selenate ions than normal." [PomBase:mah]
synonym: "resistance to valinomycin during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-02-09T03:40:24Z

[Term]
id: FYPO:0000769
name: abnormal nuclear envelope morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of all or part of the nuclear envelope is abnormal." [PomBase:mah]
comment: Note that an abnormal nuclear envelope organization process may, but does not necessarily, result in abnormal nuclear envelope morphology.
synonym: "abnormal nuclear envelope morphology during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal nuclear membrane morphology" NARROW [PomBase:mah]
is_a: FYPO:0000062 ! abnormal nuclear morphology
is_a: FYPO:0000353 ! abnormal endomembrane system morphology
relationship: output_of FYPO:0000815 ! abnormal nuclear envelope organization
created_by: midori
creation_date: 2012-02-09T03:51:02Z

[Term]
id: FYPO:0000770
name: branched nuclear inner membrane
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the nuclear inner membrane forms branched structures that extend into the nuclear lumen." [PMID:21880100, PomBase:mah]
synonym: "branched nuclear inner membrane during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000769 ! abnormal nuclear envelope morphology
created_by: midori
creation_date: 2012-02-09T03:54:48Z

[Term]
id: FYPO:0000771
name: normal nuclear pore distribution
def: "A localization phenotype observed in the vegetative growth phase of the life cycle in which the spatial arrangement of nuclear pores within the nuclear envelope is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal nuclear pore distribution during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000644 ! normal protein localization
created_by: midori
creation_date: 2012-02-09T04:03:08Z

[Term]
id: FYPO:0000772
name: perforated nuclear envelope
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the nuclear envelope has perforations or gaps (other than nuclear pores) instead of a continuous structure." [PMID:22156749, PomBase:mah]
synonym: "disrupted nuclear envelope" RELATED [PomBase:mah]
synonym: "disrupted nuclear membrane" RELATED [PomBase:mah]
synonym: "gapped nuclear envelope" EXACT [PomBase:mah]
synonym: "perforated nuclear envelope during vegetative growth" EXACT [PomBase:mah]
synonym: "perforated nuclear membrane" RELATED [PomBase:mah]
is_a: FYPO:0000769 ! abnormal nuclear envelope morphology
created_by: midori
creation_date: 2012-02-09T04:12:08Z

[Term]
id: FYPO:0000773
name: abnormal pre-replicative complex assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which pre-replicative complex assembly is abnormal." [PomBase:mah]
synonym: "abnormal pre-RC assembly" EXACT [PomBase:mah]
synonym: "abnormal pre-replicative complex assembly during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal pre-replicative complex formation" EXACT [GO:0006267, PomBase:mah]
is_a: FYPO:0000447 ! abnormal protein complex assembly
created_by: midori
creation_date: 2012-02-09T04:18:40Z

[Term]
id: FYPO:0000774
name: decreased pre-replicative complex assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of pre-replicative complex assembly is decreased." [PomBase:mah]
synonym: "decreased pre-RC assembly" EXACT [PomBase:mah]
synonym: "decreased pre-replicative complex assembly during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased pre-replicative complex formation" EXACT [GO:0006267, PomBase:mah]
synonym: "reduced pre-replicative complex assembly" EXACT [PomBase:mah]
is_a: FYPO:0000773 ! abnormal pre-replicative complex assembly
created_by: midori
creation_date: 2012-02-09T04:26:56Z

[Term]
id: FYPO:0000775
name: abnormal protein phosphorylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is abnormal." [PomBase:mah]
comment: When using this term, it is recommended to note the specific protein(s) affected.
synonym: "abnormal protein phosphorylation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000329 ! abnormal protein modification
created_by: midori
creation_date: 2012-02-09T04:32:41Z

[Term]
id: FYPO:0000776
name: normal protein phosphorylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
comment: When using this term, it is recommended to note the specific protein(s) affected.
synonym: "normal protein phosphorylation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000549 ! normal protein modification
created_by: midori
creation_date: 2012-02-09T04:33:28Z

[Term]
id: FYPO:0000777
name: abnormal double-strand break repair
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which double-strand break repair is abnormal." [PomBase:mah]
synonym: "abnormal double-strand break repair during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000188 ! abnormal DNA repair
created_by: midori
creation_date: 2012-02-09T04:35:48Z

[Term]
id: FYPO:0000778
name: delayed double-strand break repair
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which double-strand break repair is delayed." [PomBase:mah]
synonym: "delayed double-strand break repair during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000777 ! abnormal double-strand break repair
created_by: midori
creation_date: 2012-02-09T04:37:10Z

[Term]
id: FYPO:0000779
name: dumbbell-shaped cell
alt_id: FYPO:0000018
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is longer than normal and shaped in the form of a dumbbell, i.e. having two connected, rounded parts of approximately equal size, tapering towards a narrower region in the center of the long axis. In some dumbbell-shaped cells, the diameter at the ends is much greater than in wild-type cells." [PomBase:mah]
comment: Note that all dumbbell-shaped cells observed are also elongated. The distinction between this phenotype and swollen elongated cells (FYPO:0001429) is that dumbbell-shaped cells have a constriction along the long axis, whereas swollen elongated cells do not. Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "cell morphology, elongated dumbbell" EXACT [PomBase:mah]
synonym: "cell morphology, long dumbbell" EXACT [PomBase:vw]
synonym: "dumbbell-shaped cell during vegetative growth" EXACT [PomBase:mah]
synonym: "elongated dumbbell morphology" EXACT [PomBase:mah]
synonym: "elongated inviable dumbbell-shaped cell" EXACT [PomBase:vw]
is_a: FYPO:0000950 ! elongated aseptate cell
relationship: has_part FYPO:0000017 ! elongated cell
created_by: midori
creation_date: 2012-02-13T12:48:01Z

[Term]
id: FYPO:0000780
name: increased transcription
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a greater extent than normal. All genes, or a specific subset of genes, may be affected." [PomBase:mah]
comment: Use this term if there is evidence, such as labeled nucleotide incorporation, showing that transcription rather than RNA stability is affected; otherwise, use 'increased RNA level' (FYPO:0000825).
synonym: "increased transcription during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000290 ! transcription phenotype
is_a: FYPO:0001335 ! transcription regulation phenotype during vegetative growth
relationship: has_output FYPO:0000825 ! increased RNA level during vegetative growth
created_by: midori
creation_date: 2012-02-28T03:56:27Z

[Term]
id: FYPO:0000781
name: decreased transcription
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a lower extent than normal. All genes, or a specific subset of genes, may be affected." [PomBase:mah]
comment: Use this term if there is evidence, such as labeled nucleotide incorporation, showing that transcription rather than RNA stability is affected; otherwise, use 'decreased RNA level' (FYPO:0000826).
synonym: "decreased transcription during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced transcription" EXACT [PomBase:mah]
is_a: FYPO:0000290 ! transcription phenotype
is_a: FYPO:0001335 ! transcription regulation phenotype during vegetative growth
relationship: has_output FYPO:0000826 ! decreased RNA level
created_by: midori
creation_date: 2012-02-28T03:57:44Z

[Term]
id: FYPO:0000782
name: mislocalized protein
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein is observed in a particular location where it is not normally found." [PomBase:mah]
comment: The difference between this term and 'abnormal protein localization' (FYPO:0000443) is that 'mislocalized protein' describes a protein that is observed in a place where it is not normally found, whereas 'abnormal protein localization' additionally encompasses the absence of protein from a place where it is normally found. FYPO:0000782 can therefore be used in any case where a protein is in a different location in a mutant compared to wild type, whereas additional information is usually required to support annotation to FYPO:0000443 or its descendants. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "mislocalised protein" EXACT [PomBase:mah]
synonym: "mislocalized protein during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001320 ! vegetative cell phenotype
relationship: output_of FYPO:0000443 ! abnormal protein localization during vegetative growth
created_by: midori
creation_date: 2012-02-29T12:48:27Z

[Term]
id: FYPO:0000783
name: protein mislocalized to cytoplasm
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found in the cytoplasm is observed there." [PomBase:mah]
comment: Note that this term can be used to annotate any case where a protein is found in the cytoplasm in a mutant, but not in wild type. In some cases, there may be enough additional information to annotate to 'abnormal protein localization' (FYPO:0000443) or one of its descendants. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "protein mislocalised to cytoplasm" EXACT [PomBase:mah]
synonym: "protein mislocalized to cytoplasm during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000782 ! mislocalized protein
created_by: midori
creation_date: 2012-02-29T12:49:47Z

[Term]
id: FYPO:0000784
name: protein mislocalized to nucleus
alt_id: FYPO:0001251
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found in the nucleus is observed there." [PomBase:mah]
comment: Note that this term can be used to annotate any case where a protein is found in the nucleus in a mutant, but not in wild type. In some cases, there may be enough additional information to annotate to 'abnormal protein localization' (FYPO:0000443) or one of its descendants. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "protein mislocalised to nucleus" EXACT [PomBase:mah]
synonym: "protein mislocalised to nucleus during vegetative growth" EXACT [PomBase:mah]
synonym: "protein mislocalized to nucleus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000782 ! mislocalized protein
relationship: output_of FYPO:0001129 ! abnormal protein localization to nucleus
created_by: midori
creation_date: 2012-02-29T12:50:40Z

[Term]
id: FYPO:0000785
name: sensitive to formamide
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to formamide. Cells stop growing (and may die) at a concentration of formamide that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to formamide" EXACT [PomBase:mah]
synonym: "sensitive to formamide during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-02-29T01:30:18Z

[Term]
id: FYPO:0000786
name: increased plasmid loss
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which plasmids are lost at a higher frequency than normal. Plasmid loss occurs when one or both daughter cells do not inherit copies of a plasmid from the mother cell, and may result from failure of plasmid replication or segregation." [PomBase:mah]
comment: Note that in budding yeast, increased plasmid loss is often called a minichromosome maintenance defect, because "minichromosome" is roughly synonymous with an autonomously replicated and segregated plasmid in that organism.
synonym: "increased plasmid loss during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2012-02-29T01:39:20Z

[Term]
id: FYPO:0000787
name: abnormal histone H3-K9 trimethylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 9 of histone H3 is abnormal." [PomBase:mah]
synonym: "abnormal histone H3 K9 trimethylation" EXACT [GO:0036124, PomBase:mah]
synonym: "abnormal histone H3-K9 trimethylation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal histone H3K9 trimethylation" EXACT [PomBase:vw]
synonym: "abnormal histone lysine H3 K9 trimethylation" EXACT [GO:0036124, PomBase:mah]
is_a: FYPO:0000458 ! abnormal histone H3-K9 methylation
created_by: midori
creation_date: 2012-02-29T01:43:54Z

[Term]
id: FYPO:0000788
name: abnormal histone H3-K14 acetylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 is abnormal." [PomBase:mah]
synonym: "abnormal histone H3-K14 acetylation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal histone H3K14 acetylation" EXACT [GO:0044154, PomBase:vw]
is_a: FYPO:0000456 ! abnormal histone acetylation
created_by: midori
creation_date: 2012-02-29T01:46:18Z

[Term]
id: FYPO:0000789
name: sensitive to 1-NA-PP1
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to 1-NA-PP1. Cells stop growing (and may die) at a concentration of 1-NA-PP1 that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to 1-NA-PP1" EXACT [PomBase:mah]
synonym: "sensitive to 1-NA-PP1 during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to 1-tert-butyl-3-naphthalen-1-yl-1H-pyrazolo[3,4-d]pyrimidin-4-amine " EXACT [CHEBI:52310, PomBase:mah]
synonym: "sensitive to 4-amino-1-tert-butyl-3-(1'-naphthyl)pyrazolo[3,4-d]pyrimidine " EXACT [CHEBI:52310, PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-02-29T01:53:55Z

[Term]
id: FYPO:0000790
name: abnormal actin cortical patch organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch organization is abnormal. The process normally results in the assembly, arrangement of constituent parts, or disassembly of an actin cortical patch." [GO:0044396, PomBase:mah]
synonym: "abnormal actin cortical patch organisation" EXACT [PomBase:mah]
synonym: "abnormal actin cortical patch organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000801 ! abnormal actin cytoskeleton organization
is_a: FYPO:0001354 ! abnormal cellular component assembly during vegetative growth
created_by: midori
creation_date: 2012-02-29T03:11:58Z

[Term]
id: FYPO:0000791
name: abnormal actin cortical patch morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of actin cortical patches is abnormal." [PomBase:mah]
synonym: "abnormal actin cortical patch morphology during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000350 ! abnormal actin cytoskeleton morphology
relationship: output_of FYPO:0000790 ! abnormal actin cortical patch organization
created_by: midori
creation_date: 2012-02-29T03:14:15Z

[Term]
id: FYPO:0000792
name: normal glycerol dehydrogenase activity
def: "A molecular function phenotype in which the observed rate of glycerol dehydrogenase activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2012-02-29T03:25:55Z

[Term]
id: FYPO:0000793
name: abnormal glycerol dehydrogenase activity
def: "A molecular function phenotype in which the observed rate of glycerol dehydrogenase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000689 ! abnormal oxidoreductase activity
created_by: midori
creation_date: 2012-02-29T03:26:33Z

[Term]
id: FYPO:0000794
name: abolished glycerol dehydrogenase activity
def: "A molecular function phenotype in which glycerol dehydrogenase activity is absent." [PomBase:mah]
synonym: "glycerol dehydrogenase activity abolished" EXACT [PomBase:mah]
is_a: FYPO:0000664 ! abolished catalytic activity
is_a: FYPO:0000793 ! abnormal glycerol dehydrogenase activity
created_by: midori
creation_date: 2012-02-29T03:27:45Z

[Term]
id: FYPO:0000795
name: decreased glycerol dehydrogenase activity
def: "A molecular function phenotype in which the observed rate of glycerol dehydrogenase activity is decreased." [PomBase:mah]
synonym: "reduced glycerol dehydrogenase activity" EXACT [PomBase:mah]
is_a: FYPO:0000690 ! decreased oxidoreductase activity
is_a: FYPO:0000793 ! abnormal glycerol dehydrogenase activity
created_by: midori
creation_date: 2012-02-29T03:27:51Z

[Term]
id: FYPO:0000796
name: increased glycerol dehydrogenase activity
def: "A molecular function phenotype in which the observed rate of glycerol dehydrogenase activity is increased." [PomBase:mah]
synonym: "increased peptidase activity" EXACT [PomBase:mah]
is_a: FYPO:0000662 ! increased catalytic activity
is_a: FYPO:0000793 ! abnormal glycerol dehydrogenase activity
created_by: midori
creation_date: 2012-02-29T03:27:58Z

[Term]
id: FYPO:0000797
name: sensitive to TBPH
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to tert-butyl hydroperoxide (TBPH or t-BOOH). Cells stop growing (and may die) at a concentration of TBPH that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to TBPH" EXACT [PomBase:mah]
synonym: "sensitive to 2-methyl-prop-2-yl-hydroperoxide" EXACT [CHEBI:64090]
synonym: "sensitive to t-BOOH" EXACT [PomBase:al, PomBase:mah]
synonym: "sensitive to TBPH during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to tert-butyl hydroperoxide" EXACT [CHEBI:64090, PomBase:al]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-02-29T03:49:47Z

[Term]
id: FYPO:0000798
name: sensitive to anisomycin
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to anisomycin. Cells stop growing (and may die) at a concentration of anisomycin that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to anisomycin" EXACT [PomBase:mah]
synonym: "sensitive to anisomycin during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-02-29T03:54:43Z

[Term]
id: FYPO:0000799
name: sensitive to diamide
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to N,N,N',N'-tetramethyldiazene-1,2-dicarboxamide, also known as diamide. Cells stop growing (and may die) at a concentration of diamide that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to diamide" EXACT [PomBase:mah]
synonym: "sensitive to diamide during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to N,N,N',N'-tetramethyldiazene-1,2-dicarboxamide" EXACT [CHEBI:48958]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-03-01T01:37:57Z

[Term]
id: FYPO:0000800
name: increased concentration of substance in growth medium
def: "A phenotype in which the concentration of a substance released into the growth medium by cells is higher than normal." [PomBase:mah]
comment: Note that this term refers only to substances released into the growth medium by cells, not to the concentration of ingredients in the medium as formulated. Consider also annotating to 'increased level of substance in cell' (FYPO:0000990), if there is evidence that the intracellular level of a substance is also increased.
synonym: "increased accumulation of substance in growth medium" RELATED [PomBase:mah]
synonym: "increased level of substance in growth medium" EXACT [PomBase:mah]
synonym: "increased release of substance into growth medium" RELATED [PomBase:mah]
is_a: FYPO:0001155 ! altered effect on growth medium
created_by: midori
creation_date: 2012-03-07T03:41:12Z

[Term]
id: FYPO:0000801
name: abnormal actin cytoskeleton organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cytoskeleton organization is abnormal." [GO:0030036, PMID:19713940, PomBase:mah]
comment: Consider annotating to 'abnormal actin cytoskeleton morphology' (FYPO:0000350), but note that an abnormal actin cytoskeleton organization process may, but does not necessarily, result in abnormal actin cytoskeleton morphology.
synonym: "abnormal actin cytoskeleton organisation" EXACT [PomBase:mah]
synonym: "abnormal actin cytoskeleton organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000296 ! actin cytoskeleton organization phenotype
is_a: FYPO:0001328 ! abnormal cytoskeleton organization during vegetative growth
created_by: midori
creation_date: 2012-03-01T02:05:28Z

[Term]
id: FYPO:0000802
name: abnormal cytoskeleton organization
def: "A cellular process phenotype in which cytoskeleton organization is abnormal." [GO:0007010, PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "abnormal cytoskeleton organisation" EXACT [PomBase:mah]
is_a: FYPO:0000295 ! cytoskeleton organization phenotype
is_a: FYPO:0000335 ! abnormal cellular component organization
created_by: midori
creation_date: 2012-03-01T02:43:53Z

[Term]
id: FYPO:0000803
name: increased concentration of DHA in growth medium
def: "A phenotype in which the concentration of glycerone (also called 1,3-dihydroxypropan-2-one, dihydroxyacetone, or DHA) released into the growth medium by cells is higher than normal." [PomBase:mah]
synonym: "increased accumulation of DHA in growth medium" RELATED [PomBase:mah]
synonym: "increased concentration of 1,3-dihydroxypropan-2-one in growth medium" EXACT [CHEBI:16016]
synonym: "increased concentration of dihydroxyacetone in growth medium" EXACT [CHEBI:16016]
synonym: "increased concentration of glycerone in growth medium" EXACT [CHEBI:16016]
synonym: "increased level of DHA in growth medium" EXACT [PomBase:mah]
synonym: "increased release of DHA into growth medium" RELATED [PomBase:mah]
is_a: FYPO:0000800 ! increased concentration of substance in growth medium
created_by: midori
creation_date: 2012-03-07T03:42:46Z

[Term]
id: FYPO:0000804
name: abnormal endomembrane system organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which endomembrane system organization is abnormal. Endomembrane system organization results in the assembly, arrangement of constituent parts, or disassembly of the endomembrane system, which encompasses the endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope." [GO:0010256, GO:0012505, PomBase:mah]
comment: Consider annotating to 'abnormal endomembrane system morphology' (FYPO:0000353), but note that an abnormal endomembrane system organization process may, but does not necessarily, result in abnormal endomembrane system morphology.
synonym: "abnormal endomembrane system organisation" EXACT [PomBase:mah]
synonym: "abnormal endomembrane system organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001351 ! abnormal membrane organization during vegetative growth
created_by: midori
creation_date: 2012-03-01T03:25:09Z

[Term]
id: FYPO:0000805
name: abnormal endoplasmic reticulum organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which endoplasmic reticulum (ER) organization is abnormal. ER organization results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum." [GO:0007029, PomBase:mah]
comment: Consider annotating to 'abnormal endoplasmic reticulum morphology' (FYPO:0000354), but note that an abnormal endoplasmic reticulum organization process may, but does not necessarily, result in abnormal endoplasmic reticulum morphology.
synonym: "abnormal endoplasmic reticulum organisation" EXACT [PomBase:mah]
synonym: "abnormal endoplasmic reticulum organization during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal ER organization" EXACT [PomBase:mah]
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2012-03-01T03:25:48Z

[Term]
id: FYPO:0000806
name: abnormal Golgi organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which Golgi organization is abnormal. Golgi organization results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus." [GO:0007030, PomBase:mah]
comment: Consider annotating to 'abnormal Golgi morphology' (FYPO:0000349), but note that an abnormal Golgi organization process may, but does not necessarily, result in abnormal Golgi morphology.
synonym: "abnormal Golgi organisation" EXACT [PomBase:mah]
synonym: "abnormal Golgi organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2012-03-01T03:29:07Z

[Term]
id: FYPO:0000807
name: abnormal kinetochore organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which kinetochore organization is abnormal. Kinetochore organization results in the assembly, arrangement of constituent parts, or disassembly of the kinetochore, the chromosomal attachment point for the spindle microtubules." [GO:0051383, PomBase:mah]
comment: Consider annotating to 'abnormal kinetochore structure' (FYPO:0000050), but note that an abnormal kinetochore organization process may, but does not necessarily, result in abnormal kinetochore structure.
synonym: "abnormal kinetochore organisation" EXACT [PomBase:mah]
synonym: "abnormal kinetochore organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000641 ! abnormal chromosome organization
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2012-03-01T03:29:58Z

[Term]
id: FYPO:0000808
name: abnormal lipid particle organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which lipid particle organization is abnormal. Lipid particle organization results in the assembly, arrangement of constituent parts, or disassembly of a lipid particle." [GO:0034389, PomBase:mah]
comment: Consider annotating to 'abnormal lipid particle morphology' (FYPO:0000356), but note that an abnormal lipid particle organization process may, but does not necessarily, result in abnormal lipid particle morphology.
synonym: "abnormal lipid particle organisation" EXACT [PomBase:mah]
synonym: "abnormal lipid particle organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2012-03-01T03:31:02Z

[Term]
id: FYPO:0000809
name: abnormal mitochondrion organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrion organization is abnormal. Mitochondrion organization results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion, and includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome, as well as synthesis of new mitochondrial components." [GO:0007005, PomBase:mah]
comment: Consider annotating to 'abnormal mitochondrial morphology' (FYPO:0000359), but note that an abnormal mitochondrion organization process may, but does not necessarily, result in abnormal mitochondrial morphology.
synonym: "abnormal mitochondrion organisation" EXACT [PomBase:mah]
synonym: "abnormal mitochondrion organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2012-03-01T03:31:48Z

[Term]
id: FYPO:0000810
name: abnormal nucleus organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleus organization is abnormal. Nucleus organization results in the assembly, arrangement of constituent parts, or disassembly of the nucleus." [GO:0006997, PomBase:mah]
comment: Consider annotating to 'abnormal nuclear morphology' (FYPO:0000062), but note that an abnormal nucleus organization process may, but does not necessarily, result in abnormal nuclear morphology.
synonym: "abnormal nuclear organization" EXACT [PomBase:mah]
synonym: "abnormal nucleus organisation" EXACT [PomBase:mah]
synonym: "abnormal nucleus organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2012-03-01T03:34:22Z

[Term]
id: FYPO:0000811
name: abnormal peroxisome organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which peroxisome organization is abnormal. Peroxisome organization results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome." [GO:0007031, PomBase:mah]
comment: Consider annotating to 'abnormal peroxisomal morphology' (FYPO:0000362), but note that an abnormal peroxisome organization process may, but does not necessarily, result in abnormal peroxisome morphology.
synonym: "abnormal peroxisome organisation" EXACT [PomBase:mah]
synonym: "abnormal peroxisome organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2012-03-01T03:38:04Z

[Term]
id: FYPO:0000812
name: abnormal vacuole organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which vacuole organization is abnormal. Vacuole organization results in the assembly, arrangement of constituent parts, or disassembly of a vacuole." [GO:0007033, PomBase:mah]
comment: Consider annotating to 'abnormal vacuolar morphology' (FYPO:0000368), but note that an abnormal vacuole organization process may, but does not necessarily, result in abnormal vacuolar morphology.
synonym: "abnormal vacuolar organisation" EXACT [PomBase:vw]
synonym: "abnormal vacuolar organization" EXACT [PomBase:vw]
synonym: "abnormal vacuole organisation" EXACT [PomBase:mah]
synonym: "abnormal vacuole organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2012-03-01T03:38:52Z

[Term]
id: FYPO:0000813
name: abnormal plasma membrane organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which plasma membrane organization is abnormal. Plasma membrane organization results in the assembly, arrangement of constituent parts, or disassembly of the plasma membrane." [GO:0007009, PomBase:mah]
comment: Consider annotating to 'abnormal plasma membrane morphology' (FYPO:0000364), but note that an abnormal plasma membrane organization process may, but does not necessarily, result in abnormal plasma membrane morphology.
synonym: "abnormal plasma membrane organisation" EXACT [PomBase:mah]
synonym: "abnormal plasma membrane organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001351 ! abnormal membrane organization during vegetative growth
created_by: midori
creation_date: 2012-03-01T03:41:39Z

[Term]
id: FYPO:0000814
name: abnormal nucleolus organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleolus organization is abnormal. Nucleolus organization results in the assembly, arrangement of constituent parts, or disassembly of the nucleolus." [PomBase:mah]
comment: Consider annotating to 'abnormal nucleolar morphology' (FYPO:0000361), but note that an abnormal nucleolus organization process may, but does not necessarily, result in abnormal nucleolar morphology.
synonym: "abnormal nucleolus organisation" EXACT [PomBase:mah]
synonym: "abnormal nucleolus organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000810 ! abnormal nucleus organization
created_by: midori
creation_date: 2012-03-01T03:42:44Z

[Term]
id: FYPO:0000815
name: abnormal nuclear envelope organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear envelope organization is abnormal. Nuclear envelope organization results in the assembly, arrangement of constituent parts, or disassembly of the nuclear envelope." [PomBase:mah]
comment: Consider annotating to 'abnormal nuclear envelope morphology' (FYPO:0000769), but note that an abnormal nuclear envelope organization process may, but does not necessarily, result in abnormal nuclear envelope morphology.
synonym: "abnormal nuclear envelope organisation" EXACT [PomBase:mah]
synonym: "abnormal nuclear envelope organization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000810 ! abnormal nucleus organization
is_a: FYPO:0001351 ! abnormal membrane organization during vegetative growth
created_by: midori
creation_date: 2012-03-01T03:45:03Z

[Term]
id: FYPO:0000816
name: decreased concentration of substance in growth medium
def: "A phenotype in which the concentration of a substance released into the growth medium by cells is lower than normal." [PomBase:mah]
comment: Note that this term refers only to substances released into the growth medium by cells, not to the concentration of ingredients in the medium as formulated. Consider also annotating to 'decreased level of substance in cell' (FYPO:0000991), if there is evidence that the intracellular level of a substance is also increased.
synonym: "decreased accumulation of substance in growth medium" RELATED [PomBase:mah]
synonym: "decreased level of substance in growth medium" EXACT [PomBase:mah]
synonym: "decreased release of substance into growth medium" RELATED [PomBase:mah]
synonym: "reduced concentration of substance in growth medium" EXACT [PomBase:mah]
is_a: FYPO:0001155 ! altered effect on growth medium
created_by: midori
creation_date: 2012-03-07T03:47:46Z

[Term]
id: FYPO:0000817
name: increased concentration of pheromone in growth medium
def: "A phenotype in which the concentration of a peptide pheromone released into the growth medium by cells is higher than normal." [PomBase:mah]
synonym: "increased accumulation of pheromone in growth medium" RELATED [PomBase:mah]
synonym: "increased concentration of peptide pheromone in growth medium" EXACT [PomBase:mah]
synonym: "increased level of pheromone in growth medium" EXACT [PomBase:mah]
synonym: "increased release of pheromone into growth medium" RELATED [PomBase:mah]
synonym: "pheromone production: increased" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0000800 ! increased concentration of substance in growth medium
created_by: midori
creation_date: 2012-03-07T03:50:03Z

[Term]
id: FYPO:0000818
name: increased concentration of M-factor in growth medium
def: "A phenotype in which the concentration of M-factor, the mating pheromone produced by mating type minus cells, released into the growth medium is higher than normal." [PomBase:mah]
synonym: "increased accumulation of M-factor in growth medium" RELATED [PomBase:mah]
synonym: "increased level of M-factor in growth medium" EXACT [PomBase:mah]
synonym: "increased release of M-factor into growth medium" RELATED [PomBase:mah]
is_a: FYPO:0000817 ! increased concentration of pheromone in growth medium
created_by: midori
creation_date: 2012-03-07T04:12:02Z

[Term]
id: FYPO:0000819
name: increased concentration of P-factor in growth medium
def: "A phenotype in which the concentration of P-factor, the mating pheromone produced by mating type plus cells, released into the growth medium is higher than normal." [PomBase:mah]
synonym: "increased accumulation of P-factor in growth medium" RELATED [PomBase:mah]
synonym: "increased level of P-factor in growth medium" EXACT [PomBase:mah]
synonym: "increased release of P-factor into growth medium" RELATED [PomBase:mah]
is_a: FYPO:0000817 ! increased concentration of pheromone in growth medium
created_by: midori
creation_date: 2012-03-07T04:14:04Z

[Term]
id: FYPO:0000820
name: decreased concentration of pheromone in growth medium
def: "A phenotype in which the concentration of a peptide pheromone released into the growth medium by cells is lower than normal." [PomBase:mah]
synonym: "decreased accumulation of pheromone in growth medium" RELATED [PomBase:mah]
synonym: "decreased concentration of peptide pheromone in growth medium" EXACT [PomBase:mah]
synonym: "decreased level of pheromone in growth medium" EXACT [PomBase:mah]
synonym: "decreased release of pheromone into growth medium" RELATED [PomBase:mah]
synonym: "pheromone production: decreased" RELATED [SGD:phenotype_annotation]
synonym: "reduced concentration of pheromone in growth medium" EXACT [PomBase:mah]
is_a: FYPO:0000816 ! decreased concentration of substance in growth medium
created_by: midori
creation_date: 2012-03-07T04:14:58Z

[Term]
id: FYPO:0000821
name: decreased concentration of M-factor in growth medium
def: "A phenotype in which the concentration of M-factor, the mating pheromone produced by mating type minus cells, released into the growth medium is lower than normal." [PomBase:mah]
synonym: "decreased accumulation of M-factor in growth medium" RELATED [PomBase:mah]
synonym: "decreased level of M-factor in growth medium" EXACT [PomBase:mah]
synonym: "decreased release of M-factor into growth medium" RELATED [PomBase:mah]
synonym: "reduced concentration of M-factor in growth medium" EXACT [PomBase:mah]
is_a: FYPO:0000820 ! decreased concentration of pheromone in growth medium
created_by: midori
creation_date: 2012-03-07T04:15:08Z

[Term]
id: FYPO:0000822
name: decreased concentration of P-factor in growth medium
def: "A phenotype in which the concentration of P-factor, the mating pheromone produced by mating type plus cells, released into the growth medium is lower than normal." [PomBase:mah]
synonym: "decreased accumulation of P-factor in growth medium" RELATED [PomBase:mah]
synonym: "decreased level of P-factor in growth medium" EXACT [PomBase:mah]
synonym: "decreased release of P-factor into growth medium" RELATED [PomBase:mah]
synonym: "reduced concentration of P-factor in growth medium" EXACT [PomBase:mah]
is_a: FYPO:0000820 ! decreased concentration of pheromone in growth medium
created_by: midori
creation_date: 2012-03-07T04:15:24Z

[Term]
id: FYPO:0000824
name: altered RNA level
def: "A cell phenotype in which the amount of RNA measured in a cell differs from normal. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "abnormal RNA level" EXACT [PomBase:mah]
synonym: "altered cellular mRNA level" NARROW [PomBase:vw]
synonym: "altered cellular RNA level" EXACT [PomBase:mah]
synonym: "RNA accumulation: abnormal" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0000989 ! altered level of substance in cell
relationship: output_of FYPO:0000142 ! gene expression phenotype
created_by: midori
creation_date: 2012-03-08T03:02:56Z

[Term]
id: FYPO:0000825
name: increased RNA level during vegetative growth
alt_id: FYPO:0001247
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell is higher than normal. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "increased cellular mRNA level during vegetative growth" NARROW [PomBase:vw]
synonym: "increased cellular RNA level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased mRNA level during vegetative growth" NARROW [PomBase:mah]
synonym: "increased RNA accumulation during vegetative growth" RELATED [PomBase:mah]
synonym: "increased RNA level during vegetative growth" EXACT [PomBase:mah]
synonym: "RNA accumulation: increased during vegetative growth" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0001326 ! altered RNA level during vegetative growth
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
is_a: FYPO:0001890 ! increased RNA level
created_by: midori
creation_date: 2012-03-08T03:15:26Z

[Term]
id: FYPO:0000826
name: decreased RNA level
def: "A cell phenotype in which the amount of RNA measured in a cell is lower than normal. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
subset: qc_do_not_manually_annotate
synonym: "decreased cellular mRNA level" NARROW [PomBase:vw]
synonym: "decreased cellular RNA level" EXACT [PomBase:mah]
synonym: "decreased RNA accumulation" RELATED [PomBase:mah]
synonym: "reduced RNA level" EXACT [PomBase:mah]
synonym: "RNA accumulation: decreased" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0000824 ! altered RNA level
is_a: FYPO:0000991 ! decreased level of substance in cell
created_by: midori
creation_date: 2012-03-08T03:16:30Z

[Term]
id: FYPO:0000827
name: advanced cell cycle progression
def: "A cellular process phenotype in which cell cycle progression is advanced, one or more cell cycle phase transitions takes place earlier than normal." [PomBase:mah]
synonym: "advanced cell cycle progression during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000011 ! abnormal cell cycle progression
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-03-08T03:30:50Z

[Term]
id: FYPO:0000828
name: advanced mitotic G1 phase progression
def: "A cellular process phenotype in which progression through the G1 phase of the mitotic cell cycle is advanced." [PomBase:mah]
synonym: "accelerated entry into G1" RELATED [PomBase:al]
synonym: "advanced mitotic G1 phase progression during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic cell cycle advance in G1" EXACT [PomBase:mah]
is_a: FYPO:0000602 ! abnormal mitotic G1 phase progression
is_a: FYPO:0000827 ! advanced cell cycle progression
created_by: midori
creation_date: 2012-03-08T03:30:59Z

[Term]
id: FYPO:0000829
name: resistance to cisplatin
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of cisplatin than normal." [PomBase:mah]
synonym: "resistance to cis-DPP" EXACT [CHEBI:27899]
synonym: "resistance to cisplatin during vegetative growth" EXACT [PomBase:mah]
synonym: "resistance to DPP" BROAD [CHEBI:27899]
synonym: "resistant to cisplatin" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-03-08T03:43:33Z

[Term]
id: FYPO:0000830
name: resistance to vanadate
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of vanadate ions than normal." [PomBase:mah]
synonym: "resistance to vanadate during vegetative growth" EXACT [PomBase:mah]
synonym: "resistance to vanadium oxoanion" EXACT [CHEBI:30528]
synonym: "resistant to vanadate" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-03-08T03:44:55Z

[Term]
id: FYPO:0000831
name: resistance to actinomycin D
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of actinomycin D than normal." [PomBase:mah]
synonym: "resistance to actinomycin D during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to actinomycin D" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-03-08T03:46:56Z

[Term]
id: FYPO:0000832
name: elongated nucleus
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the nucleus is longer than normal." [PomBase:mah]
synonym: "elongated nuclei" EXACT [PomBase:vw]
synonym: "elongated nucleus during vegetative growth" EXACT [PomBase:mah]
synonym: "long nucleus" EXACT [PomBase:vw]
is_a: FYPO:0000062 ! abnormal nuclear morphology
created_by: midori
creation_date: 2012-03-09T03:40:40Z

[Term]
id: FYPO:0000833
name: normal protein level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "normal protein level during vegetative growth" EXACT [PomBase:mah]
synonym: "protein/peptide accumulation: normal" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-03-09T03:50:03Z

[Term]
id: FYPO:0000834
name: altered protein level
def: "A cell phenotype in which the amount of protein measured in a cell differs from normal. Total protein or a specific protein may be affected." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
subset: qc_do_not_manually_annotate
synonym: "abnormal protein level" EXACT [PomBase:mah]
synonym: "altered cellular protein level" EXACT [PomBase:mah]
synonym: "protein/peptide accumulation: abnormal" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0000989 ! altered level of substance in cell
relationship: output_of FYPO:0000142 ! gene expression phenotype
created_by: midori
creation_date: 2012-03-09T03:50:50Z

[Term]
id: FYPO:0000835
name: decreased protein level
def: "A cell phenotype in which the amount of protein measured in a cell is lower than normal. Total protein or a specific protein may be affected." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
subset: qc_do_not_manually_annotate
synonym: "decreased protein accumulation" RELATED [PomBase:mah]
synonym: "protein/peptide accumulation: decreased" RELATED [SGD:phenotype_annotation]
synonym: "reduced protein level" EXACT [PomBase:mah]
is_a: FYPO:0000834 ! altered protein level
is_a: FYPO:0000991 ! decreased level of substance in cell
created_by: midori
creation_date: 2012-03-09T03:50:57Z

[Term]
id: FYPO:0000836
name: increased protein level
def: "A cell phenotype in which the amount of protein measured in a cell is higher than normal. Total protein or a specific protein may be affected." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
subset: qc_do_not_manually_annotate
synonym: "increased protein accumulation" RELATED [PomBase:mah]
synonym: "protein/peptide accumulation: increased" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0000834 ! altered protein level
is_a: FYPO:0000990 ! increased level of substance in cell
created_by: midori
creation_date: 2012-03-09T03:51:05Z

[Term]
id: FYPO:0000837
name: cell cycle arrest in mitotic interphase
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested in any part of interphase. Includes normal and abnormal occurrences of arrest." [PomBase:mah]
synonym: "cell cycle arrest in mitotic interphase during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic interphase cell cycle arrest" EXACT [PomBase:mah]
is_a: FYPO:0001024 ! cell cycle arrest phenotype
created_by: midori
creation_date: 2012-03-09T04:18:58Z

[Term]
id: FYPO:0000838
name: normal protein localization to nucleus
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "normal protein localisation to nucleus" EXACT [PomBase:mah]
synonym: "normal protein localization to nucleus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000644 ! normal protein localization
created_by: midori
creation_date: 2012-03-12T03:24:23Z

[Term]
id: FYPO:0000839
name: elongated mononucleate aseptate cell
def: "A cell phenotype in which a cell contains one nucleus, has no septum, is elongated, and is inviable." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "elongated mononucleate aseptate cell during vegetative growth" EXACT [PomBase:mah]
synonym: "inviable elongated mononucleate aseptate cell" EXACT [PomBase:mah, PomBase:vw]
synonym: "long aseptate mononucleate cell" EXACT [PomBase:vw]
is_a: FYPO:0001916 ! elongated mononucleate cell
is_a: FYPO:0002066 ! inviable elongated aseptate cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000060 ! mononucleate
relationship: has_part FYPO:0000949 ! aseptate
relationship: has_part FYPO:0001489 ! inviable vegetative cell
relationship: output_of FYPO:0001028 ! abnormal cell cycle arrest in mitotic interphase
created_by: midori
creation_date: 2012-03-12T03:25:38Z

[Term]
id: FYPO:0000840
name: normal RNA level
def: "A cell phenotype in which the amount of RNA measured in a cell is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
subset: qc_do_not_manually_annotate
synonym: "normal cellular RNA level" EXACT [PomBase:mah]
synonym: "normal mRNA level" NARROW [PomBase:mah]
synonym: "RNA accumulation: normal" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0001076 ! normal level of substance in cell
created_by: midori
creation_date: 2012-03-14T12:06:03Z

[Term]
id: FYPO:0000841
name: sensitive to sodium dodecyl sulfate
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to sodium dodecyl sulfate (SDS). Cells stop growing (and may die) at a concentration of SDS that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to sodium dodecyl sulfate" EXACT [PomBase:mah]
synonym: "sensitive to SDS" EXACT [CHEBI:8984]
synonym: "sensitive to sodium dodecyl sulfate during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to sodium dodecyl sulphate" EXACT [CHEBI:8984]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-03-14T01:14:35Z

[Term]
id: FYPO:0000842
name: sensitive to ethanol
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to ethanol. Cells stop growing (and may die) at a concentration of ethanol that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to ethanol" EXACT [PomBase:mah]
synonym: "sensitive to ethanol during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to ethyl alcohol" EXACT [CHEBI:16236]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-03-14T01:25:07Z

[Term]
id: FYPO:0000843
name: sensitive to dithiothreitol
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to 1,4-dithiothreitol (DTT). Cells stop growing (and may die) at a concentration of dithiothreitol that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to dithiothreitol" EXACT [PomBase:mah]
synonym: "sensitive to 1,4-dithiothreitol" EXACT [CHEBI:18320]
synonym: "sensitive to dithiothreitol during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to DTT" EXACT [PomBase:al]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-03-14T01:26:35Z

[Term]
id: FYPO:0000844
name: sensitive to mercaptoethanol
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to mercaptoethanol. Cells stop growing (and may die) at a concentration of mercaptoethanol that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to mercaptoethanol" EXACT [PomBase:mah]
synonym: "sensitive to 2-sulfanylethanol" EXACT [CHEBI:41218]
synonym: "sensitive to mercaptoethanol during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-03-14T01:27:55Z

[Term]
id: FYPO:0000845
name: abnormal protein degradation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein degradation is abnormal. Protein degradation, also known as protein catabolism, is any metabolic process that results in the destruction of the native, active configuration of a protein, with or without the hydrolysis of peptide bonds." [GO:0030163, PomBase:mah]
synonym: "abnormal protein breakdown" EXACT [GO:0030163]
synonym: "abnormal protein catabolic process" EXACT [GO:0030163, PomBase:mah]
synonym: "abnormal protein catabolism" EXACT [GO:0030163, PomBase:mah]
synonym: "abnormal protein degradation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000328 ! abnormal protein metabolic process
created_by: midori
creation_date: 2012-03-14T02:33:44Z

[Term]
id: FYPO:0000846
name: decreased protein degradation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein degradation is decreased." [PomBase:mah]
synonym: "decreased protein catabolic process" EXACT [GO:0030163, PomBase:mah]
synonym: "decreased protein catabolism" EXACT [GO:0030163, PomBase:mah]
synonym: "decreased protein degradation during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced protein degradation" EXACT [PomBase:mah]
is_a: FYPO:0000845 ! abnormal protein degradation
relationship: has_output FYPO:0000836 ! increased protein level
created_by: midori
creation_date: 2012-03-14T02:57:05Z

[Term]
id: FYPO:0000847
name: increased protein degradation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein degradation is increased." [PomBase:mah]
synonym: "increased protein catabolic process" EXACT [GO:0030163, PomBase:mah]
synonym: "increased protein catabolism" EXACT [GO:0030163, PomBase:mah]
synonym: "increased protein degradation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000845 ! abnormal protein degradation
created_by: midori
creation_date: 2012-03-14T03:00:52Z

[Term]
id: FYPO:0000848
name: abnormal chromosome morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of one or more chromosomes is abnormal." [PomBase:mah]
comment: Note that an abnormal chromosome organization process may, but does not necessarily, result in abnormal chromosome morphology.
synonym: "abnormal chromosome morphology during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
relationship: output_of FYPO:0000641 ! abnormal chromosome organization
created_by: midori
creation_date: 2012-03-14T03:09:26Z

[Term]
id: FYPO:0000849
name: cytoplasmic protein accumulation
def: "A localization phenotype observed in the vegetative growth phase of the life cycle in which specific proteins abnormally accumulate, and are constitutively located in, the cytoplasm." [PomBase:mah]
synonym: "cytoplasmic accumulation of protein" EXACT [PomBase:mah]
synonym: "cytoplasmic protein accumulation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000762 ! protein accumulation
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2012-03-14T04:24:49Z

[Term]
id: FYPO:0000850
name: resistance to stress during vegetative growth
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show decreased sensitivity to a stress." [PomBase:mah]
synonym: "resistant to stress during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001341 ! abnormal cellular response to stress during vegetative growth
is_a: FYPO:0002046 ! resistance to stress
created_by: midori
creation_date: 2012-03-15T10:55:12Z

[Term]
id: FYPO:0000851
name: resistance to osmotic stress
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show decreased sensitivity to osmotic stress." [PomBase:mah]
synonym: "resistance to osmotic stress during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to osmotic stress" EXACT [PomBase:mah]
is_a: FYPO:0000193 ! abnormal cellular response to osmotic stress
is_a: FYPO:0000850 ! resistance to stress during vegetative growth
created_by: midori
creation_date: 2012-03-15T10:55:59Z

[Term]
id: FYPO:0000852
name: resistance to salt stress
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show decreased sensitivity to a salt stress." [PomBase:mah]
synonym: "ionic stress resistance: increased" EXACT [SGD:phenotype_annotation]
synonym: "resistant to salt stress" EXACT [PomBase:mah]
synonym: "resistant to salt stress during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000851 ! resistance to osmotic stress
created_by: midori
creation_date: 2012-03-15T10:56:15Z

[Term]
id: FYPO:0000853
name: abnormal nucleosome positioning
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome positioning is abnormal. Nucleosome positioning is the ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another." [GO:0016584, PomBase:mah]
synonym: "abnormal nucleosome positioning during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal nucleosome spacing" EXACT [GO:0016584, PomBase:mah]
is_a: FYPO:0001352 ! abnormal chromatin organization during vegetative growth
created_by: midori
creation_date: 2012-03-20T11:46:43Z

[Term]
id: FYPO:0000854
name: abnormal nucleosome positioning in euchromatin
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome positioning in regions of euchromatin is abnormal. Nucleosome positioning is the ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another." [GO:0016584, PomBase:mah]
synonym: "abnormal nucleosome positioning in euchromatin during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal nucleosome spacing in euchromatin" EXACT [GO:0016584, PomBase:mah]
is_a: FYPO:0000853 ! abnormal nucleosome positioning
created_by: midori
creation_date: 2012-03-20T11:52:16Z

[Term]
id: FYPO:0000855
name: abnormal nucleosome positioning in heterochromatin
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome positioning in regions of heterochromatin is abnormal. Nucleosome positioning is the ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another." [GO:0016584, PomBase:mah]
synonym: "abnormal nucleosome positioning in heterochromatin during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal nucleosome spacing in heterochromatin" EXACT [GO:0016584, PomBase:mah]
is_a: FYPO:0000853 ! abnormal nucleosome positioning
created_by: midori
creation_date: 2012-03-20T11:53:31Z

[Term]
id: FYPO:0000856
name: normal nucleosome positioning
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome positioning is normal (i.e. indistinguishable from wild type). Nucleosome positioning is the ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another." [GO:0016584, PomBase:mah]
synonym: "normal nucleosome positioning during vegetative growth" EXACT [PomBase:mah]
synonym: "normal nucleosome spacing" EXACT [GO:0016584, PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2012-03-20T11:54:42Z

[Term]
id: FYPO:0000857
name: normal nucleosome positioning in euchromatin
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome positioning in regions of euchromatin is normal (i.e. indistinguishable from wild type). Nucleosome positioning is the ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another." [GO:0016584, PomBase:mah]
synonym: "normal nucleosome positioning in euchromatin during vegetative growth" EXACT [PomBase:mah]
synonym: "normal nucleosome spacing in euchromatin" EXACT [GO:0016584, PomBase:mah]
is_a: FYPO:0000856 ! normal nucleosome positioning
created_by: midori
creation_date: 2012-03-20T11:55:39Z

[Term]
id: FYPO:0000858
name: normal nucleosome positioning in heterochromatin
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome positioning in regions of heterochromatin is normal (i.e. indistinguishable from wild type). Nucleosome positioning is the ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another." [GO:0016584, PomBase:mah]
synonym: "normal nucleosome positioning in heterochromatin during vegetative growth" EXACT [PomBase:mah]
synonym: "normal nucleosome spacing in heterochromatin" EXACT [GO:0016584, PomBase:mah]
is_a: FYPO:0000856 ! normal nucleosome positioning
created_by: midori
creation_date: 2012-03-20T11:55:49Z

[Term]
id: FYPO:0000859
name: normal metabolic process
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which a cellular metabolic process is normal (i.e. indistinguishable from wild type). A metabolic process is any set of chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances." [GO:0044237, PomBase:mah]
synonym: "normal cellular metabolic process" EXACT [GO:0044237, PomBase:mah]
synonym: "normal metabolic process during vegetative growth" EXACT [PomBase:mah]
synonym: "normal metabolism" EXACT [GO:0044237, PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001348 ! cellular metabolism phenotype during vegetative growth
created_by: midori
creation_date: 2012-03-20T12:10:04Z

[Term]
id: FYPO:0000860
name: abnormal metabolic process
def: "A cellular process phenotype in which a cellular metabolic process is abnormal. A metabolic process is any set of chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances." [GO:0044237, PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "abnormal cellular metabolic process" EXACT [GO:0044237, PomBase:mah]
synonym: "abnormal metabolism" EXACT [GO:0044237, PomBase:mah]
is_a: FYPO:0000140 ! cellular metabolism phenotype
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2012-03-20T12:11:59Z

[Term]
id: FYPO:0000861
name: normal histone methylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone methylation is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal histone methylation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000549 ! normal protein modification
created_by: midori
creation_date: 2012-03-20T12:15:03Z

[Term]
id: FYPO:0000862
name: normal histone H3-K9 dimethylation at centromere
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromeric regions is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal centromeric histone H3-K9 dimethylation " EXACT [PomBase:mah]
synonym: "normal histone H3-K9 dimethylation at centromere during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000861 ! normal histone methylation
created_by: midori
creation_date: 2012-03-20T12:18:40Z

[Term]
id: FYPO:0000863
name: normal histone H3-K9 dimethylation at centromere inner repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal histone H3-K9 dimethylation at centromere inner repeat during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000862 ! normal histone H3-K9 dimethylation at centromere
created_by: midori
creation_date: 2012-03-20T12:20:16Z

[Term]
id: FYPO:0000864
name: abnormal histone H3-K9 trimethylation at centromere
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromeric regions is abnormal." [PomBase:mah]
synonym: "abnormal centromeric histone H3-K9 trimethylation" EXACT [PomBase:mah]
synonym: "abnormal histone H3 K9 trimethylation at centromere" EXACT [GO:0036124, PomBase:mah]
synonym: "abnormal histone H3-K9 trimethylation at centromere during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal histone H3K9 trimethylation at centromere" EXACT [PomBase:vw]
synonym: "abnormal histone lysine H3 K9 trimethylation at centromere" EXACT [GO:0036124, PomBase:mah]
is_a: FYPO:0000787 ! abnormal histone H3-K9 trimethylation
created_by: midori
creation_date: 2012-03-20T12:22:17Z

[Term]
id: FYPO:0000865
name: abnormal histone H3-K9 trimethylation at centromere inner repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions is abnormal." [PomBase:mah]
synonym: "abnormal histone H3 K9 trimethylation at centromere inner repeat" EXACT [GO:0036124, PomBase:mah]
synonym: "abnormal histone H3-K9 trimethylation at centromere inner repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal histone H3K9 trimethylation at centromere inner repeat" EXACT [PomBase:vw]
synonym: "abnormal histone lysine H3 K9 trimethylation at centromere inner repeat" EXACT [GO:0036124, PomBase:mah]
is_a: FYPO:0000864 ! abnormal histone H3-K9 trimethylation at centromere
created_by: midori
creation_date: 2012-03-20T12:25:24Z

[Term]
id: FYPO:0000866
name: abnormal histone H3-K9 dimethylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 9 of histone H3 is abnormal." [PomBase:mah]
synonym: "abnormal histone H3 K9 dimethylation" EXACT [GO:0036123, PomBase:mah]
synonym: "abnormal histone H3-K9 dimethylation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal histone H3K9 dimethylation" EXACT [PomBase:vw]
synonym: "abnormal histone lysine H3 K9 dimethylation" EXACT [GO:0036123, PomBase:mah]
is_a: FYPO:0000458 ! abnormal histone H3-K9 methylation
created_by: midori
creation_date: 2012-03-20T12:28:22Z

[Term]
id: FYPO:0000867
name: abnormal histone H3-K9 dimethylation at centromere
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromeric regions is abnormal." [PomBase:mah]
synonym: "abnormal centromeric histone H3-K9 dimethylation" EXACT [PomBase:mah]
synonym: "abnormal histone H3 K9 dimethylation at centromere" EXACT [GO:0036123, PomBase:mah]
synonym: "abnormal histone H3-K9 dimethylation at centromere during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal histone H3K9 dimethylation at centromere" EXACT [PomBase:vw]
synonym: "abnormal histone lysine H3 K9 dimethylation at centromere" EXACT [GO:0036123, PomBase:mah]
is_a: FYPO:0000866 ! abnormal histone H3-K9 dimethylation
created_by: midori
creation_date: 2012-03-20T12:29:39Z

[Term]
id: FYPO:0000868
name: abnormal histone H3-K9 dimethylation at centromere inner repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions is abnormal." [PomBase:mah]
synonym: "abnormal histone H3 K9 dimethylation at centromere inner repeat" EXACT [GO:0036123, PomBase:mah]
synonym: "abnormal histone H3-K9 dimethylation at centromere inner repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal histone H3K9 dimethylation at centromere inner repeat" EXACT [PomBase:vw]
synonym: "abnormal histone lysine H3 K9 dimethylation at centromere inner repeat" EXACT [GO:0036123, PomBase:mah]
is_a: FYPO:0000867 ! abnormal histone H3-K9 dimethylation at centromere
created_by: midori
creation_date: 2012-03-20T12:29:52Z

[Term]
id: FYPO:0000869
name: increased histone methylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone methylation occurs to a greater extent than normal. All histone methylation may be affected, or methylation of specific sites on specific histones may be increased." [PomBase:mah]
synonym: "increased histone methylation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000457 ! abnormal histone methylation
created_by: midori
creation_date: 2012-03-20T12:32:05Z

[Term]
id: FYPO:0000870
name: decreased histone methylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone methylation occurs to a lower extent than normal. All histone methylation may be affected, or methylation of specific sites on specific histones may be decreased." [PomBase:mah]
synonym: "decreased histone methylation during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced histone methylation" EXACT [PomBase:mah]
is_a: FYPO:0000457 ! abnormal histone methylation
created_by: midori
creation_date: 2012-03-20T12:32:18Z

[Term]
id: FYPO:0000871
name: increased histone H3-K9 methylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased histone H3 K9 methylation" EXACT [GO:0051567, PomBase:mah]
synonym: "increased histone H3-K9 methylation during vegetative growth" EXACT [PomBase:mah]
synonym: "increased histone H3K9me" EXACT [GO:0051567, PomBase:mah]
synonym: "increased histone lysine H3 K9 methylation" EXACT [GO:0051567, PomBase:mah]
is_a: FYPO:0000458 ! abnormal histone H3-K9 methylation
is_a: FYPO:0000869 ! increased histone methylation
created_by: midori
creation_date: 2012-03-20T12:33:11Z

[Term]
id: FYPO:0000872
name: decreased histone H3-K9 methylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased histone H3 K9 methylation" EXACT [GO:0051567, PomBase:mah]
synonym: "decreased histone H3-K9 methylation during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased histone H3K9me" EXACT [GO:0051567, PomBase:mah]
synonym: "decreased histone lysine H3 K9 methylation" EXACT [GO:0051567, PomBase:mah]
synonym: "reduced histone H3-K9 methylation" EXACT [PomBase:mah]
is_a: FYPO:0000458 ! abnormal histone H3-K9 methylation
is_a: FYPO:0000870 ! decreased histone methylation
created_by: midori
creation_date: 2012-03-20T12:34:25Z

[Term]
id: FYPO:0000873
name: increased histone H3-K9 dimethylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 9 of histone H3 occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased histone H3 K9 dimethylation" EXACT [GO:0036123, PomBase:mah]
synonym: "increased histone H3-K9 dimethylation during vegetative growth" EXACT [PomBase:mah]
synonym: "increased histone H3K9 dimethylation" EXACT [PomBase:vw]
synonym: "increased histone lysine H3 K9 dimethylation" EXACT [GO:0036123, PomBase:mah]
is_a: FYPO:0000866 ! abnormal histone H3-K9 dimethylation
is_a: FYPO:0000871 ! increased histone H3-K9 methylation
created_by: midori
creation_date: 2012-03-20T01:25:01Z

[Term]
id: FYPO:0000874
name: increased histone H3-K9 dimethylation at centromere
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromeric regions occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased centromeric histone H3-K9 dimethylation" EXACT [PomBase:mah]
synonym: "increased histone H3 K9 dimethylation at centromere" EXACT [GO:0036123, PomBase:mah]
synonym: "increased histone H3-K9 dimethylation at centromere during vegetative growth" EXACT [PomBase:mah]
synonym: "increased histone H3K9 dimethylation at centromere" EXACT [PomBase:vw]
synonym: "increased histone lysine H3 K9 dimethylation at centromere" EXACT [GO:0036123, PomBase:mah]
is_a: FYPO:0000867 ! abnormal histone H3-K9 dimethylation at centromere
is_a: FYPO:0000873 ! increased histone H3-K9 dimethylation
created_by: midori
creation_date: 2012-03-20T01:25:10Z

[Term]
id: FYPO:0000875
name: increased histone H3-K9 dimethylation at centromere inner repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased histone H3 K9 dimethylation at centromere inner repeat" EXACT [GO:0036123, PomBase:mah]
synonym: "increased histone H3-K9 dimethylation at centromere inner repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "increased histone H3K9 dimethylation at centromere inner repeat" EXACT [PomBase:vw]
synonym: "increased histone lysine H3 K9 dimethylation at centromere inner repeat" EXACT [GO:0036123, PomBase:mah]
is_a: FYPO:0000868 ! abnormal histone H3-K9 dimethylation at centromere inner repeat
is_a: FYPO:0000874 ! increased histone H3-K9 dimethylation at centromere
created_by: midori
creation_date: 2012-03-20T01:25:53Z

[Term]
id: FYPO:0000876
name: decreased histone H3-K9 dimethylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 9 of histone H3 occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased histone H3 K9 dimethylation" EXACT [GO:0036123, PomBase:mah]
synonym: "decreased histone H3-K9 dimethylation during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased histone H3K9 dimethylation" EXACT [PomBase:vw]
synonym: "decreased histone lysine H3 K9 dimethylation" EXACT [GO:0036123, PomBase:mah]
synonym: "reduced histone H3-K9 dimethylation" EXACT [PomBase:mah]
is_a: FYPO:0000866 ! abnormal histone H3-K9 dimethylation
is_a: FYPO:0000872 ! decreased histone H3-K9 methylation
created_by: midori
creation_date: 2012-03-20T01:35:21Z

[Term]
id: FYPO:0000877
name: decreased histone H3-K9 dimethylation at centromere
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromeric regions occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased centromeric histone H3-K9 dimethylation" EXACT [PomBase:mah]
synonym: "decreased histone H3 K9 dimethylation at centromere" EXACT [GO:0036123, PomBase:mah]
synonym: "decreased histone H3-K9 dimethylation at centromere during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased histone H3K9 dimethylation at centromere" EXACT [PomBase:vw]
synonym: "decreased histone lysine H3 K9 dimethylation at centromere" EXACT [GO:0036123, PomBase:mah]
synonym: "reduced histone H3-K9 dimethylation at centromere" EXACT [PomBase:mah]
is_a: FYPO:0000867 ! abnormal histone H3-K9 dimethylation at centromere
is_a: FYPO:0000876 ! decreased histone H3-K9 dimethylation
created_by: midori
creation_date: 2012-03-20T01:36:04Z

[Term]
id: FYPO:0000878
name: decreased histone H3-K9 dimethylation at centromere inner repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased histone H3 K9 dimethylation at centromere inner repeat" EXACT [GO:0036123, PomBase:mah]
synonym: "decreased histone H3-K9 dimethylation at centromere inner repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased histone H3K9 dimethylation at centromere inner repeat" EXACT [PomBase:vw]
synonym: "reduced histone H3-K9 dimethylation at centromere inner repeat" EXACT [PomBase:mah]
synonym: "v histone lysine H3 K9 dimethylation at centromere inner repeat" EXACT [GO:0036123, PomBase:mah]
is_a: FYPO:0000868 ! abnormal histone H3-K9 dimethylation at centromere inner repeat
is_a: FYPO:0000877 ! decreased histone H3-K9 dimethylation at centromere
created_by: midori
creation_date: 2012-03-20T01:36:23Z

[Term]
id: FYPO:0000879
name: increased histone H3-K9 trimethylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 9 of histone H3 occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased histone H3 K9 trimethylation" EXACT [GO:0036124, PomBase:mah]
synonym: "increased histone H3-K9 trimethylation during vegetative growth" EXACT [PomBase:mah]
synonym: "increased histone H3K9 trimethylation" EXACT [PomBase:vw]
synonym: "increased histone lysine H3 K9 trimethylation" EXACT [GO:0036124, PomBase:mah]
is_a: FYPO:0000787 ! abnormal histone H3-K9 trimethylation
is_a: FYPO:0000871 ! increased histone H3-K9 methylation
created_by: midori
creation_date: 2012-03-20T01:42:40Z

[Term]
id: FYPO:0000880
name: increased histone H3-K9 trimethylation at centromere
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromeric regions occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased centromeric histone H3-K9 trimethylation" EXACT [PomBase:mah]
synonym: "increased histone H3 K9 trimethylation at centromere" EXACT [GO:0036124, PomBase:mah]
synonym: "increased histone H3-K9 trimethylation at centromere during vegetative growth" EXACT [PomBase:mah]
synonym: "increased histone H3K9 trimethylation at centromere" EXACT [PomBase:vw]
synonym: "increased histone lysine H3 K9 trimethylation at centromere" EXACT [GO:0036124, PomBase:mah]
is_a: FYPO:0000864 ! abnormal histone H3-K9 trimethylation at centromere
is_a: FYPO:0000879 ! increased histone H3-K9 trimethylation
created_by: midori
creation_date: 2012-03-20T01:42:53Z

[Term]
id: FYPO:0000881
name: increased histone H3-K9 trimethylation at centromere inner repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased histone H3 K9 trimethylation at centromere inner repeat" EXACT [GO:0036124, PomBase:mah]
synonym: "increased histone H3-K9 trimethylation at centromere inner repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "increased histone H3K9 trimethylation at centromere inner repeat" EXACT [PomBase:vw]
synonym: "increased histone lysine H3 K9 trimethylation at centromere inner repeat" EXACT [GO:0036124, PomBase:mah]
is_a: FYPO:0000865 ! abnormal histone H3-K9 trimethylation at centromere inner repeat
is_a: FYPO:0000880 ! increased histone H3-K9 trimethylation at centromere
created_by: midori
creation_date: 2012-03-20T01:43:01Z

[Term]
id: FYPO:0000882
name: decreased histone H3-K9 trimethylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 9 of histone H3 occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased histone H3 K9 trimethylation" EXACT [GO:0036124, PomBase:mah]
synonym: "decreased histone H3-K9 trimethylation during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased histone H3K9 trimethylation" EXACT [PomBase:vw]
synonym: "decreased histone lysine H3 K9 trimethylation" EXACT [GO:0036124, PomBase:mah]
synonym: "reduced histone H3-K9 trimethylation" EXACT [PomBase:mah]
is_a: FYPO:0000787 ! abnormal histone H3-K9 trimethylation
is_a: FYPO:0000872 ! decreased histone H3-K9 methylation
created_by: midori
creation_date: 2012-03-20T01:47:31Z

[Term]
id: FYPO:0000883
name: decreased histone H3-K9 trimethylation at centromere
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromeric regions occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased centromeric histone H3-K9 trimethylation" EXACT [PomBase:mah]
synonym: "decreased histone H3 K9 trimethylation at centromere" EXACT [GO:0036124, PomBase:mah]
synonym: "decreased histone H3-K9 trimethylation at centromere during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased histone H3K9 trimethylation at centromere" EXACT [PomBase:vw]
synonym: "decreased histone lysine H3 K9 trimethylation at centromere" EXACT [GO:0036124, PomBase:mah]
synonym: "reduced histone H3-K9 trimethylation at centromere" EXACT [PomBase:mah]
is_a: FYPO:0000864 ! abnormal histone H3-K9 trimethylation at centromere
is_a: FYPO:0000882 ! decreased histone H3-K9 trimethylation
created_by: midori
creation_date: 2012-03-20T01:47:38Z

[Term]
id: FYPO:0000884
name: decreased histone H3-K9 trimethylation at centromere inner repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased histone H3 K9 trimethylation at centromere inner repeat" EXACT [GO:0036124, PomBase:mah]
synonym: "decreased histone H3-K9 trimethylation at centromere inner repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased histone H3K9 trimethylation at centromere inner repeat" EXACT [PomBase:vw]
synonym: "decreased histone lysine H3 K9 trimethylation at centromere inner repeat" EXACT [GO:0036124, PomBase:mah]
synonym: "reduced histone H3-K9 trimethylation at centromere inner repeat" EXACT [PomBase:mah]
is_a: FYPO:0000865 ! abnormal histone H3-K9 trimethylation at centromere inner repeat
is_a: FYPO:0000883 ! decreased histone H3-K9 trimethylation at centromere
created_by: midori
creation_date: 2012-03-20T01:47:46Z

[Term]
id: FYPO:0000885
name: abnormal histone H3-K9 trimethylation at centromere outer repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromere outer repeat regions is abnormal." [PomBase:mah]
synonym: "abnormal histone H3 K9 trimethylation at centromere outer repeat" EXACT [GO:0036124, PomBase:mah]
synonym: "abnormal histone H3-K9 trimethylation at centromere outer repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal histone H3K9 trimethylation at centromere outer repeat" EXACT [PomBase:vw]
synonym: "abnormal histone lysine H3 K9 trimethylation at centromere outer repeat" EXACT [GO:0036124, PomBase:mah]
is_a: FYPO:0000864 ! abnormal histone H3-K9 trimethylation at centromere
created_by: midori
creation_date: 2012-03-20T12:25:24Z

[Term]
id: FYPO:0000886
name: abnormal histone H3-K9 dimethylation at centromere outer repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromere outer repeat regions is abnormal." [PomBase:mah]
synonym: "abnormal histone H3 K9 dimethylation at centromere outer repeat" EXACT [GO:0036123, PomBase:mah]
synonym: "abnormal histone H3-K9 dimethylation at centromere outer repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal histone H3K9 dimethylation at centromere outer repeat" EXACT [PomBase:vw]
synonym: "abnormal histone lysine H3 K9 dimethylation at centromere outer repeat" EXACT [GO:0036123, PomBase:mah]
is_a: FYPO:0000867 ! abnormal histone H3-K9 dimethylation at centromere
created_by: midori
creation_date: 2012-03-20T12:29:52Z

[Term]
id: FYPO:0000887
name: increased histone H3-K9 dimethylation at centromere outer repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromere outer repeat regions occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased histone H3 K9 dimethylation at centromere outer repeat" EXACT [GO:0036123, PomBase:mah]
synonym: "increased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "increased histone H3K9 dimethylation at centromere outer repeat" EXACT [PomBase:vw]
synonym: "increased histone lysine H3 K9 dimethylation at centromere outer repeat" EXACT [GO:0036123, PomBase:mah]
is_a: FYPO:0000874 ! increased histone H3-K9 dimethylation at centromere
is_a: FYPO:0000886 ! abnormal histone H3-K9 dimethylation at centromere outer repeat
created_by: midori
creation_date: 2012-03-20T01:25:53Z

[Term]
id: FYPO:0000888
name: decreased histone H3-K9 dimethylation at centromere outer repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromere outer repeat regions occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased histone H3 K9 dimethylation at centromere outer repeat" EXACT [GO:0036123, PomBase:mah]
synonym: "decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased histone H3K9 dimethylation at centromere outer repeat" EXACT [PomBase:vw]
synonym: "reduced histone H3-K9 dimethylation at centromere outer repeat" EXACT [PomBase:mah]
synonym: "v histone lysine H3 K9 dimethylation at centromere outer repeat" EXACT [GO:0036123, PomBase:mah]
is_a: FYPO:0000877 ! decreased histone H3-K9 dimethylation at centromere
is_a: FYPO:0000886 ! abnormal histone H3-K9 dimethylation at centromere outer repeat
created_by: midori
creation_date: 2012-03-20T01:36:23Z

[Term]
id: FYPO:0000889
name: increased histone H3-K9 trimethylation at centromere outer repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromere outer repeat regions occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased histone H3 K9 trimethylation at centromere outer repeat" EXACT [GO:0036124, PomBase:mah]
synonym: "increased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "increased histone H3K9 trimethylation at centromere outer repeat" EXACT [PomBase:vw]
synonym: "increased histone lysine H3 K9 trimethylation at centromere outer repeat" EXACT [GO:0036124, PomBase:mah]
is_a: FYPO:0000880 ! increased histone H3-K9 trimethylation at centromere
is_a: FYPO:0000885 ! abnormal histone H3-K9 trimethylation at centromere outer repeat
created_by: midori
creation_date: 2012-03-20T01:43:01Z

[Term]
id: FYPO:0000890
name: decreased histone H3-K9 trimethylation at centromere outer repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromere outer repeat regions occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased histone H3 K9 trimethylation at centromere outer repeat" EXACT [GO:0036124, PomBase:mah]
synonym: "decreased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased histone H3K9 trimethylation at centromere outer repeat" EXACT [PomBase:vw]
synonym: "decreased histone lysine H3 K9 trimethylation at centromere outer repeat" EXACT [GO:0036124, PomBase:mah]
synonym: "reduced histone H3-K9 trimethylation at centromere outer repeat" EXACT [PomBase:mah]
is_a: FYPO:0000883 ! decreased histone H3-K9 trimethylation at centromere
is_a: FYPO:0000885 ! abnormal histone H3-K9 trimethylation at centromere outer repeat
created_by: midori
creation_date: 2012-03-20T01:47:46Z

[Term]
id: FYPO:0000891
name: abnormal histone H3-K9 acetylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 9 of histone H3 is abnormal." [PomBase:mah]
synonym: "abnormal histone H3-K9 acetylation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal histone H3K9 acetylation" EXACT [GO:0044154, PomBase:vw]
is_a: FYPO:0000456 ! abnormal histone acetylation
created_by: midori
creation_date: 2012-03-20T01:47:46Z

[Term]
id: FYPO:0000892
name: increased histone H3-K9 acetylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 9 of histone H3 occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased histone H3-K9 acetylation during vegetative growth" EXACT [PomBase:mah]
synonym: "increased histone H3K9 acetylation" EXACT [GO:0044154, PomBase:vw]
is_a: FYPO:0000332 ! increased histone acetylation
is_a: FYPO:0000891 ! abnormal histone H3-K9 acetylation
created_by: midori
creation_date: 2012-03-20T01:47:46Z

[Term]
id: FYPO:0000893
name: increased histone H3-K9 acetylation at centromere
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 9 of histone H3 in centromeric regions occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased centromeric histone H3K9 acetylation" EXACT [GO:0044154, PomBase:mah]
synonym: "increased histone H3-K9 acetylation at centromere during vegetative growth" EXACT [PomBase:mah]
synonym: "increased histone H3K9 acetylation at centromere" EXACT [GO:0044154, PomBase:mah]
is_a: FYPO:0000892 ! increased histone H3-K9 acetylation
created_by: midori
creation_date: 2012-03-20T01:47:46Z

[Term]
id: FYPO:0000894
name: abnormal intracellular mitochondrion distribution
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which intracellular mitochondrion distribution, the process that results in the spatial arrangement of mitochondria in a cell, is abnormal." [GO:0048312, PomBase:mah]
synonym: "abnormal intracellular mitochondrion distribution during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000489 ! abnormal mitochondrial distribution
created_by: midori
creation_date: 2012-03-29T02:42:20Z

[Term]
id: FYPO:0000895
name: mitochondrial aggregation
def: "An abnormal intracellular mitochondrion distribution phenotype observed in the vegetative growth phase of the life cycle in which mitochondria cluster together more than normal." [PomBase:mah]
synonym: "mitochondrial aggregation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000894 ! abnormal intracellular mitochondrion distribution
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2012-03-29T02:45:02Z

[Term]
id: FYPO:0000896
name: mitochondrial aggregation at cell tip
def: "An abnormal intracellular mitochondrion distribution phenotype observed in the vegetative growth phase of the life cycle in which mitochondria cluster together more than normal, with a cluster at one or both ends of the cell." [PomBase:mah]
synonym: "mitochondrial aggregation at cell tip during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000895 ! mitochondrial aggregation
created_by: midori
creation_date: 2012-03-29T02:53:52Z

[Term]
id: FYPO:0000897
name: normal mitochondrial fission
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial fission, the division of a mitochondrion into two or more separate compartments, is normal (i.e. indistinguishable from wild type)." [GO:0000266, PomBase:mah]
synonym: "normal mitochondrial division" EXACT [GO:0000266, PomBase:mah]
synonym: "normal mitochondrial fission during vegetative growth" EXACT [PomBase:mah]
synonym: "normal mitochondrial proliferation" RELATED [GO:0000266, PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2012-03-29T02:55:09Z

[Term]
id: FYPO:0000898
name: normal mitochondrial fusion
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial fusion, the merging of two or more separate mitochondria into a single compartment, is normal (i.e. indistinguishable from wild type)." [GO:0008053, PomBase:mah]
synonym: "normal mitochondrial fusion during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2012-03-29T02:56:39Z

[Term]
id: FYPO:0000899
name: normal microtubule cytoskeleton organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule cytoskeleton organization is normal (i.e. indistinguishable from wild type). Microtubule cytoskeleton organization is the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins." [GO:0000226, PomBase:mah]
synonym: "normal microtubule cytoskeleton organisation" EXACT [PomBase:mah]
synonym: "normal microtubule cytoskeleton organization during vegetative growth" EXACT [PomBase:mah]
synonym: "normal microtubule dynamics" EXACT [GO:0000226, PomBase:mah]
synonym: "normal microtubule organization" RELATED [GO:0000226, PomBase:mah]
is_a: FYPO:0000297 ! microtubule cytoskeleton organization phenotype
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2012-03-29T03:10:18Z

[Term]
id: FYPO:0000900
name: abnormal linear element assembly
def: "A cellular process phenotype in which linear element assembly, the formation of a proteinaceous scaffold in association with S. pombe chromosomes during meiotic prophase, is abnormal." [PomBase:mah]
synonym: "linear element formation" EXACT [GO:0030999, PomBase:mah]
is_a: FYPO:0000335 ! abnormal cellular component organization
created_by: midori
creation_date: 2012-03-30T04:40:50Z

[Term]
id: FYPO:0000901
name: abnormal microtubule polymerization or depolymerization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule polymerization or depolymerization, by the addition or removal of tubulin dimers respectively, is abnormal." [GO:0031109, PomBase:mah]
synonym: "abnormal microtubule polymerization or depolymerization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001350 ! abnormal microtubule cytoskeleton organization during vegetative growth
created_by: midori
creation_date: 2012-03-29T03:29:01Z

[Term]
id: FYPO:0000902
name: abnormal microtubule depolymerization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule depolymerization, i.e. the removal of tubulin dimers from a microtubule, is abnormal." [GO:0007019, PomBase:mah]
synonym: "abnormal microtubule depolymerization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000901 ! abnormal microtubule polymerization or depolymerization
created_by: midori
creation_date: 2012-03-29T03:30:40Z

[Term]
id: FYPO:0000903
name: decreased microtubule depolymerization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule depolymerization, i.e. the removal of tubulin dimers from a microtubule, occurs to a lower extent than normal." [GO:0007019, PomBase:mah]
synonym: "decreased microtubule depolymerization during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased microtubule shrinkage" RELATED [PomBase:vw]
synonym: "increased microtubule stability" RELATED [PomBase:vw]
synonym: "reduced microtubule depolymerization" EXACT [PomBase:mah]
is_a: FYPO:0000902 ! abnormal microtubule depolymerization
is_a: FYPO:0000904 ! decreased microtubule polymerization or depolymerization
created_by: midori
creation_date: 2012-03-29T03:32:17Z

[Term]
id: FYPO:0000904
name: decreased microtubule polymerization or depolymerization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule polymerization or depolymerization, by the addition or removal of tubulin dimers respectively, occurs to a lesser extent than normal. Microtubules are thus less dynamic than normal." [GO:0031109, PomBase:mah]
synonym: "decreased microtubule dynamicity" RELATED [PomBase:vw]
synonym: "decreased microtubule polymerization or depolymerization during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced microtubule polymerization or depolymerization" EXACT [PomBase:mah]
is_a: FYPO:0000901 ! abnormal microtubule polymerization or depolymerization
created_by: midori
creation_date: 2012-03-29T03:33:35Z

[Term]
id: FYPO:0000905
name: abnormal protein ubiquitination
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the ubiquitination of one or more specific proteins, or of specific protein sites, is abnormal." [PomBase:mah]
comment: When using this term, it is recommended to note the specific protein(s) affected.
synonym: "abnormal protein ubiquitination during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal protein ubiquitinylation" RELATED [GO:0016567, PomBase:mah]
synonym: "abnormal protein ubiquitylation" EXACT [GO:0016567, PomBase:mah]
is_a: FYPO:0000329 ! abnormal protein modification
created_by: midori
creation_date: 2012-03-30T04:12:43Z

[Term]
id: FYPO:0000906
name: abnormal mitochondrion inheritance
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrion inheritance is abnormal. Mitochondrion inheritance is a cellular process that results in the distribution of mitochondria into daughter cells after mitosis or meiosis, mediated by interactions between mitochondria and the cytoskeleton." [GO:0000001, PomBase:mah]
synonym: "abnormal mitochondrial inheritance" EXACT [GO:0000001, PomBase:mah]
synonym: "abnormal mitochondrion inheritance during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000489 ! abnormal mitochondrial distribution
created_by: midori
creation_date: 2012-03-29T03:41:35Z

[Term]
id: FYPO:0000907
name: abolished mitochondrion inheritance
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrion inheritance is abolished, resulting in the formation of a daughter cell that lacks mitochondria." [GO:0000001, PomBase:mah]
synonym: "abolished mitochondrion inheritance during vegetative growth" EXACT [PomBase:mah]
synonym: "asymmetric mitochondrial inheritance" RELATED [PomBase:vw]
synonym: "mitochondrion inheritance abolished" EXACT [PomBase:mah]
is_a: FYPO:0000906 ! abnormal mitochondrion inheritance
created_by: midori
creation_date: 2012-03-29T03:47:40Z

[Term]
id: FYPO:0000908
name: mixed population including viable and inviable cells
def: "A mixed population phenotype in which some cells in a population are viable and others are inviable." [PomBase:mah]
is_a: FYPO:0000317 ! mixed population
is_a: FYPO:0002057 ! cell population viability
relationship: includes_cells_with_phenotype FYPO:0000049 ! inviable cell
relationship: includes_cells_with_phenotype FYPO:0000124 ! viable cell
created_by: midori
creation_date: 2012-03-29T03:52:40Z

[Term]
id: FYPO:0000909
name: abnormal protein localization to linear element
def: "A cell phenotype in which the localization of a protein to linear elements is abnormal." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found at the medial cortex and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to linear element" EXACT [GO:0036181, PomBase:mah]
is_a: FYPO:0001370 ! abnormal protein localization
created_by: midori
creation_date: 2012-03-30T04:48:31Z

[Term]
id: FYPO:0000910
name: RNA accumulation
def: "A localization phenotype observed in the vegetative growth phase of the life cycle in which specific RNA molecules abnormally accumulate in the cell, or in a part of the cell such as within an organelle." [PomBase:mah]
synonym: "RNA accumulation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000360 ! abnormal RNA localization
created_by: midori
creation_date: 2012-03-29T04:00:37Z

[Term]
id: FYPO:0000911
name: nuclear RNA accumulation
def: "A localization phenotype observed in the vegetative growth phase of the life cycle in which specific RNA molecules abnormally accumulate, and are constitutively located in, the nucleus." [PMID:12896976, PomBase:mah]
synonym: "nuclear accumulation of RNA" EXACT [PomBase:mah]
synonym: "nuclear RNA accumulation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000910 ! RNA accumulation
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2012-03-29T04:01:15Z

[Term]
id: FYPO:0000912
name: abolished protein ubiquitination
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the ubiquitination of one or more specific proteins, or of specific protein sites, does not occur." [PomBase:mah]
comment: When using this term, it is recommended to note the specific protein(s) affected.
synonym: "abolished protein ubiquitination during vegetative growth" EXACT [PomBase:mah]
synonym: "abolished protein ubiquitinylation" RELATED [GO:0016567, PomBase:mah]
synonym: "abolished protein ubiquitylation" EXACT [GO:0016567, PomBase:mah]
synonym: "protein ubiquitination abolished" EXACT [PomBase:mah]
is_a: FYPO:0000544 ! abolished protein modification
is_a: FYPO:0000905 ! abnormal protein ubiquitination
created_by: midori
creation_date: 2012-03-30T04:14:39Z

[Term]
id: FYPO:0000913
name: abnormal sporulation resulting in formation of ascus containing non-uniform spores
def: "A sporulation phenotype that results in the formation of an ascus that contains spores of non-uniform size and DNA content." [PMID:20298435, PomBase:mah, PomBase:vw]
synonym: "abnormal ascospore formation resulting in formation ascus containing non-uniform spores" EXACT [GO:0030437, PomBase:mah]
synonym: "abnormal sporulation resulting in formation of asci containing non-uniform spores" RELATED [PomBase:mah]
is_a: FYPO:0000121 ! abnormal sporulation
created_by: midori
creation_date: 2012-04-02T12:04:59Z

[Term]
id: FYPO:0000914
name: normal glutamate-ammonia ligase activity
def: "A molecular function phenotype in which the observed rate of glutamate-ammonia ligase (also known as glutamine synthetase) activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal glutamine synthetase activity" EXACT [GO:0004356, PomBase:mah]
synonym: "normal glutamylhydroxamic synthetase activity" EXACT [GO:0004356]
synonym: "normal GS activity" EXACT [PMID:7851743, PomBase:al]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2012-04-02T01:46:50Z

[Term]
id: FYPO:0000915
name: abnormal pyruvate dehydrogenase activity
def: "A molecular function phenotype in which the observed rate of pyruvate dehydrogenase activity is abnormal." [PomBase:mah]
synonym: "abnormal PDH activity" EXACT [PMID:7851743, PomBase:al]
is_a: FYPO:0000689 ! abnormal oxidoreductase activity
created_by: midori
creation_date: 2012-04-02T01:51:18Z

[Term]
id: FYPO:0000916
name: decreased pyruvate dehydrogenase activity
def: "A molecular function phenotype in which the observed rate of pyruvate dehydrogenase activity is decreased." [PomBase:mah]
synonym: "decreased PDH activity" EXACT [PMID:7851743, PomBase:al]
synonym: "reduced pyruvate dehydrogenase activity" EXACT [PomBase:mah]
is_a: FYPO:0000690 ! decreased oxidoreductase activity
is_a: FYPO:0000915 ! abnormal pyruvate dehydrogenase activity
created_by: midori
creation_date: 2012-04-02T01:51:30Z

[Term]
id: FYPO:0000917
name: abnormal citrate (Si)-synthase activity
def: "A molecular function phenotype in which the observed rate of citrate (Si)-synthase activity is abnormal." [PomBase:mah]
synonym: "abnormal citrate synthase activity" BROAD [GO:0004108, PMID:7851743, PomBase:al]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-04-02T01:54:26Z

[Term]
id: FYPO:0000918
name: decreased citrate (Si)-synthase activity
def: "A molecular function phenotype in which the observed rate of citrate (Si)-synthase activity is decreased." [PomBase:mah]
synonym: "decreased citrate synthase activity" BROAD [GO:0004108, PMID:7851743, PomBase:al]
synonym: "reduced citrate (Si)-synthase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0000917 ! abnormal citrate (Si)-synthase activity
created_by: midori
creation_date: 2012-04-02T01:54:32Z

[Term]
id: FYPO:0000919
name: increased citrate (Si)-synthase activity
def: "A molecular function phenotype in which the observed rate of citrate (Si)-synthase activity is increased." [PomBase:mah]
synonym: "increased citrate synthase activity" BROAD [GO:0004108, PMID:7851743, PomBase:al]
is_a: FYPO:0000662 ! increased catalytic activity
is_a: FYPO:0000917 ! abnormal citrate (Si)-synthase activity
created_by: midori
creation_date: 2012-04-02T02:24:33Z

[Term]
id: FYPO:0000920
name: abnormal aconitate hydratase activity
def: "A molecular function phenotype in which the observed rate of aconitate hydratase (also known as aconitase) activity is abnormal." [PomBase:mah]
synonym: "abnormal aconitase activity" EXACT [GO:0003994, PMID:7851743, PomBase:al]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-04-02T02:26:26Z

[Term]
id: FYPO:0000921
name: increased aconitate hydratase activity
def: "A molecular function phenotype in which the observed rate of aconitate hydratase (also known as aconitase) activity is increased." [PomBase:mah]
synonym: "increased aconitase activity" EXACT [GO:0003994, PMID:7851743, PomBase:al]
is_a: FYPO:0000662 ! increased catalytic activity
is_a: FYPO:0000920 ! abnormal aconitate hydratase activity
created_by: midori
creation_date: 2012-04-02T02:26:32Z

[Term]
id: FYPO:0000922
name: abnormal isocitrate dehydrogenase (NAD+) activity
def: "A molecular function phenotype in which the observed rate of isocitrate dehydrogenase (NAD+) activity is abnormal." [PomBase:mah]
synonym: "abnormal NAD-IDH activity" EXACT [PMID:7851743, PomBase:al]
is_a: FYPO:0000689 ! abnormal oxidoreductase activity
created_by: midori
creation_date: 2012-04-02T02:33:48Z

[Term]
id: FYPO:0000923
name: increased isocitrate dehydrogenase (NAD+) activity
def: "A molecular function phenotype in which the observed rate of isocitrate dehydrogenase (NAD+) activity is increased." [PomBase:mah]
synonym: "increased NAD-IDH activity" EXACT [PMID:7851743, PomBase:al]
is_a: FYPO:0000662 ! increased catalytic activity
is_a: FYPO:0000922 ! abnormal isocitrate dehydrogenase (NAD+) activity
created_by: midori
creation_date: 2012-04-02T02:33:56Z

[Term]
id: FYPO:0000924
name: resistance to anisomycin
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of anisomycin than normal." [PomBase:mah]
synonym: "resistance to anisomycin during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-04-02T02:43:27Z

[Term]
id: FYPO:0000925
name: unequal meiotic chromosome segregation
def: "A cellular process phenotype in which chromosomes are not segregated equally to both spindle poles in a meiotic division." [PomBase:mah]
is_a: FYPO:0000151 ! abnormal meiotic chromosome segregation
created_by: midori
creation_date: 2012-04-02T03:09:45Z

[Term]
id: FYPO:0000926
name: normal volume cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has a normal volume." [PomBase:mah]
synonym: "normal volume cells during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001124 ! normal cell size
created_by: midori
creation_date: 2012-04-03T03:12:03Z

[Term]
id: FYPO:0000927
name: abolished horsetail movement
def: "A cellular process phenotype in which horsetail movement does not occur. Horsetail movement is the oscillatory movement of the nucleus that takes place during meiotic prophase I." [PomBase:mah]
synonym: "absent horsetail movement" EXACT [PomBase:vw]
synonym: "dynein-driven meiotic oscillatory nuclear movement abolished" EXACT [GO:0030989, PomBase:mah]
synonym: "horsetail movement abolished" EXACT [PomBase:mah]
synonym: "horsetail nuclear movement abolished" EXACT [GO:0030989, PomBase:mah]
is_a: FYPO:0000197 ! abnormal horsetail movement
created_by: midori
creation_date: 2012-04-02T03:23:19Z

[Term]
id: FYPO:0000928
name: abnormal protein localization to cell cortex
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell cortex is abnormal." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found at the cell cortex and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to cell cortex" EXACT [PomBase:mah]
synonym: "abnormal protein localization to cell cortex during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000929
name: decreased protein localization to cell cortex
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell cortex is decreased." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "decreased protein localisation to cell cortex" EXACT [PomBase:mah]
synonym: "decreased protein localization to cell cortex during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced protein localization to cell cortex" EXACT [PomBase:mah]
is_a: FYPO:0000928 ! abnormal protein localization to cell cortex
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000930
name: protein localization to cell cortex abolished
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell cortex does not occur." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abolished protein localization to cell cortex" EXACT [PomBase:mah]
synonym: "protein absent from cell cortex" RELATED [PomBase:mah]
synonym: "protein localisation to cell cortex abolished" EXACT [PomBase:mah]
synonym: "protein localization to cell cortex abolished during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001179 ! protein localization abolished during vegetative growth
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000931
name: abnormal protein localization to microtubule cytoskeleton
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the microtubule cytoskeleton is abnormal." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found associated with the microtubule cytoskeleton and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to microtubule cytoskeleton" EXACT [PomBase:mah]
synonym: "abnormal protein localization to microtubule cytoskeleton during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000932
name: increased protein localization to microtubule cytoskeleton
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the microtubule cytoskeleton is increased." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "increased protein localisation to microtubule cytoskeleton" EXACT [PomBase:mah]
synonym: "increased protein localization to microtubule cytoskeleton during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000931 ! abnormal protein localization to microtubule cytoskeleton
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000933
name: decreased protein localization to microtubule cytoskeleton
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the microtubule cytoskeleton is decreased." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "decreased protein localisation to microtubule cytoskeleton" EXACT [PomBase:mah]
synonym: "decreased protein localization to microtubule cytoskeleton during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced protein localization to microtubule cytoskeleton" EXACT [PomBase:mah]
is_a: FYPO:0000931 ! abnormal protein localization to microtubule cytoskeleton
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000934
name: protein localization to microtubule cytoskeleton abolished
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the microtubule cytoskeleton does not occur." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abolished protein localization to microtubule cytoskeleton" EXACT [PomBase:mah]
synonym: "protein absent from microtubule cytoskeleton" RELATED [PomBase:mah]
synonym: "protein localisation to microtubule cytoskeleton abolished" EXACT [PomBase:mah]
synonym: "protein localization to microtubule cytoskeleton abolished during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001179 ! protein localization abolished during vegetative growth
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000935
name: abnormal protein localization to cortical microtubule cytoskeleton
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cortical microtubule cytoskeleton is abnormal." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found associated with the cortical microtubule cytoskeleton and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to cortical microtubule cytoskeleton" EXACT [PomBase:mah]
synonym: "abnormal protein localization to cortical microtubule cytoskeleton during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000931 ! abnormal protein localization to microtubule cytoskeleton
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000936
name: increased protein localization to cortical microtubule cytoskeleton
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cortical microtubule cytoskeleton is increased." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "increased protein localisation to cortical microtubule cytoskeleton" EXACT [PomBase:mah]
synonym: "increased protein localization to cortical microtubule cytoskeleton during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000932 ! increased protein localization to microtubule cytoskeleton
is_a: FYPO:0000935 ! abnormal protein localization to cortical microtubule cytoskeleton
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000937
name: decreased protein localization to cortical microtubule cytoskeleton
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cortical microtubule cytoskeleton is decreased." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "decreased protein localisation to cortical microtubule cytoskeleton" EXACT [PomBase:mah]
synonym: "decreased protein localization to cortical microtubule cytoskeleton during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced protein localization to cortical microtubule cytoskeleton" EXACT [PomBase:mah]
is_a: FYPO:0000933 ! decreased protein localization to microtubule cytoskeleton
is_a: FYPO:0000935 ! abnormal protein localization to cortical microtubule cytoskeleton
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000938
name: protein localization to cortical microtubule cytoskeleton abolished
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cortical microtubule cytoskeleton does not occur." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abolished protein localization to cortical microtubule cytoskeleton" EXACT [PomBase:mah]
synonym: "protein absent from cortical microtubule cytoskeleton" RELATED [PomBase:mah]
synonym: "protein localisation to cortical microtubule cytoskeleton abolished" EXACT [PomBase:mah]
synonym: "protein localization to cortical microtubule cytoskeleton abolished during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000934 ! protein localization to microtubule cytoskeleton abolished
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000939
name: abnormal protein localization to spindle pole body
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the spindle pole body is abnormal." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found at the spindle pole body and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to spindle pole body" EXACT [PomBase:mah]
synonym: "abnormal protein localization to SPB" EXACT [PomBase:mah]
synonym: "abnormal protein localization to spindle pole body during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000940
name: decreased protein localization to spindle pole body
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the spindle pole body is decreased." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "decreased protein localisation to spindle pole body" EXACT [PomBase:mah]
synonym: "decreased protein localization to SPB" EXACT [PomBase:mah]
synonym: "decreased protein localization to spindle pole body during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced protein localization to spindle pole body" EXACT [PomBase:mah]
is_a: FYPO:0000939 ! abnormal protein localization to spindle pole body
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000941
name: abolished protein localization to spindle pole body
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the spindle pole body does not occur." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "protein absent from spindle pole body" RELATED [PomBase:mah]
synonym: "protein localisation to spindle pole body abolished" EXACT [PomBase:mah]
synonym: "protein localization to SPB abolished" EXACT [PomBase:mah]
synonym: "protein localization to spindle pole body abolished" EXACT [PomBase:mah]
synonym: "protein localization to spindle pole body abolished during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000939 ! abnormal protein localization to spindle pole body
is_a: FYPO:0001179 ! protein localization abolished during vegetative growth
created_by: midori
creation_date: 2012-04-02T03:52:49Z

[Term]
id: FYPO:0000942
name: abnormal nucleus localization in prospore
def: "A cellular process phenotype in which nucleus localization is abnormal in a prospore." [PomBase:mah]
synonym: "abnormal nuclear localization in prospore" EXACT [PomBase:mah]
synonym: "abnormal nucleus localisation in prospore" EXACT [PomBase:mah]
synonym: "abnormal nucleus localization in ascospore-type prospore" EXACT [GO:0005628, PomBase:mah]
is_a: FYPO:0000517 ! abnormal nucleus localization
created_by: midori
creation_date: 2012-04-02T04:22:13Z

[Term]
id: FYPO:0000943
name: normal spore morphology
def: "A cell phenotype characterized by normal spore morphology." [PomBase:mah]
is_a: FYPO:0000672 ! normal cell morphology
created_by: midori
creation_date: 2012-04-03T02:27:00Z

[Term]
id: FYPO:0000944
name: spore germination abolished, normal spore morphology
def: "A cellular process phenotype in which spore germination does not occur, and spores have normal morphology." [PomBase:mah]
is_a: FYPO:0000306 ! abolished spore germination
relationship: has_part FYPO:0000306 ! abolished spore germination
relationship: has_part FYPO:0000943 ! normal spore morphology
created_by: midori
creation_date: 2012-04-03T02:28:22Z

[Term]
id: FYPO:0000945
name: swollen spheroid vegetative cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is shaped in the form of a spheroid, and has a larger volume than normal." [PomBase:mah]
synonym: "enlarged volume spheroid vegetative cell" EXACT [PomBase:mah]
synonym: "swollen rounded vegetative cell" RELATED [PomBase:mah]
synonym: "swollen spheroid cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000021 ! spheroid vegetative cell
is_a: FYPO:0000646 ! swollen vegetative cell
relationship: has_part FYPO:0000021 ! spheroid vegetative cell
relationship: has_part FYPO:0000025 ! swollen cell
created_by: midori
creation_date: 2012-04-03T03:14:05Z

[Term]
id: FYPO:0000946
name: normal volume spheroid vegetative cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is shaped in the form of a spheroid, and has a normal volume." [PomBase:mah]
synonym: "normal volume rounded vegetative cell" RELATED [PomBase:mah]
synonym: "normal volume spheroid cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000021 ! spheroid vegetative cell
is_a: FYPO:0001121 ! vegetative cell, abnormal cell shape, normal cell size
relationship: has_part FYPO:0000021 ! spheroid vegetative cell
relationship: has_part FYPO:0000926 ! normal volume cell
created_by: midori
creation_date: 2012-04-03T03:16:37Z

[Term]
id: FYPO:0000947
name: swollen spherical vegetative cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is shaped in the form of a sphere, and has a larger volume than normal." [PomBase:mah]
synonym: "enlarged volume spherical vegetative cell" EXACT [PomBase:mah]
synonym: "swollen orb during vegetative growth" EXACT [PomBase:vw]
synonym: "swollen spherical cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000129 ! spherical vegetative cell
is_a: FYPO:0000945 ! swollen spheroid vegetative cell
relationship: has_part FYPO:0000025 ! swollen cell
relationship: has_part FYPO:0000129 ! spherical vegetative cell
created_by: midori
creation_date: 2012-04-03T03:27:05Z

[Term]
id: FYPO:0000948
name: normal volume spherical vegetative cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is shaped in the form of a sphere, and has a normal volume." [PomBase:mah]
synonym: "normal volume orb during vegetative growth" EXACT [PomBase:vw]
synonym: "normal volume spherical cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000129 ! spherical vegetative cell
is_a: FYPO:0000946 ! normal volume spheroid vegetative cell
relationship: has_part FYPO:0000129 ! spherical vegetative cell
relationship: has_part FYPO:0000926 ! normal volume cell
created_by: midori
creation_date: 2012-04-03T03:28:08Z

[Term]
id: FYPO:0000949
name: aseptate
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which a cell does not contain a septum." [PomBase:mah]
synonym: "absent septum" EXACT [PomBase:mah]
synonym: "aseptate during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
relationship: output_of FYPO:0000272 ! abolished septum formation
created_by: midori
creation_date: 2012-04-03T03:38:09Z

[Term]
id: FYPO:0000950
name: elongated aseptate cell
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell does not contain a septum and is elongated." [PomBase:mah]
synonym: "elongated aseptate cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000949 ! aseptate
is_a: FYPO:0001122 ! elongated vegetative cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000949 ! aseptate
created_by: midori
creation_date: 2012-04-03T03:41:12Z

[Term]
id: FYPO:0000951
name: small inviable vegetative cell
def: "A cell morphology in which a vegetative cell is inviable and has an abnormally low volume." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "essential; small vegetative cell" RELATED [PomBase:mah]
synonym: "small inviable cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000645 ! small vegetative cell
is_a: FYPO:0001489 ! inviable vegetative cell
relationship: has_part FYPO:0000023 ! small cell
relationship: has_part FYPO:0001489 ! inviable vegetative cell
created_by: midori
creation_date: 2012-04-03T04:12:31Z

[Term]
id: FYPO:0000952
name: vacuoles present in greater numbers
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which cells contain more vacuoles than normal." [PomBase:mah]
synonym: "additional vacuoles present" EXACT [PomBase:mah]
synonym: "extra vacuoles" EXACT [PomBase:mah]
synonym: "vacuoles present in greater numbers during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
created_by: midori
creation_date: 2012-04-03T04:18:23Z

[Term]
id: FYPO:0000953
name: normal cellular response to chemical stimulus
def: "A cellular response phenotype in which the cellular response to a chemical stimulus is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
is_a: FYPO:0000298 ! cellular response phenotype
is_a: FYPO:0000627 ! normal cellular process
created_by: midori
creation_date: 2012-04-12T12:15:57Z

[Term]
id: FYPO:0000954
name: normal cell population growth on nickel cation
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing nickel cations." [PomBase:mah]
synonym: "normal cell population growth in presence of nickel cations" EXACT [PomBase:mah]
synonym: "normal cell population growth on nickel" EXACT [GO:0071289, PomBase:mah]
synonym: "normal cellular response to nickel cation" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on nickel cation" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on nickel cation" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-12T12:18:01Z

[Term]
id: FYPO:0000955
name: normal cell population growth on lead ion
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing lead ions." [PomBase:mah]
synonym: "normal cell population growth in presence of lead ion" EXACT [PomBase:mah]
synonym: "normal cellular response to lead ion" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on lead ion" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on lead ion" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-12T12:21:54Z

[Term]
id: FYPO:0000956
name: normal cell population growth on bismuth
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing bismuth." [PomBase:mah]
synonym: "normal cell population growth in presence of bismuth" EXACT [PomBase:mah]
synonym: "normal cellular response to bismuth" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on bismuth" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on bismuth" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-12T12:22:52Z

[Term]
id: FYPO:0000957
name: normal cell population growth on methyl methanesulfonate
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing methyl methanesulfonate." [PomBase:mah]
synonym: "normal cell population growth in presence of methyl methanesulfonate" EXACT [PomBase:mah]
synonym: "normal cell population growth on MMS" EXACT [CHEBI:25255]
synonym: "normal cellular response to methyl methanesulfonate" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on methyl methanesulfonate" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on methyl methanesulfonate" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-12T12:23:26Z

[Term]
id: FYPO:0000958
name: normal cell population growth on mercaptoethanol
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing mercaptoethanol." [PomBase:mah]
synonym: "normal cell population growth in presence of mercaptoethanol" EXACT [PomBase:mah]
synonym: "normal cell population growth on 2-sulfanylethanol" EXACT [CHEBI:41218]
synonym: "normal cellular response to mercaptoethanol" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on mercaptoethanol" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on mercaptoethanol" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-12T12:25:12Z

[Term]
id: FYPO:0000959
name: normal cell population growth on sodium dodecyl sulfate
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing sodium dodecyl sulfate (SDS." [PomBase:mah]
synonym: "normal cell population growth in presence of sodium dodecyl sulfate" EXACT [PomBase:mah]
synonym: "normal cell population growth on SDS" EXACT [CHEBI:8984]
synonym: "normal cellular response to sodium dodecyl sulfate" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on sodium dodecyl sulfate" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on sodium dodecyl sulfate" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-12T12:28:02Z

[Term]
id: FYPO:0000960
name: normal cell population growth on ethanol
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing ethanol." [PomBase:mah]
synonym: "normal cell population growth in presence of ethanol" EXACT [PomBase:mah]
synonym: "normal cell population growth on to ethyl alcohol" EXACT [PomBase:mah]
synonym: "normal cellular response to ethanol" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on ethanol" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on ethanol" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-12T12:35:28Z

[Term]
id: FYPO:0000961
name: normal cell population growth on sorbitol
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing sorbitol." [PomBase:mah]
synonym: "normal cell population growth in presence of sorbitol" EXACT [PomBase:mah]
synonym: "normal cell population growth on glucitol" EXACT [CHEBI:30199]
synonym: "normal cellular response to sorbitol" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on sorbitol" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on sorbitol" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-12T12:36:31Z

[Term]
id: FYPO:0000962
name: normal cell population growth on hydrogen peroxide
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing hydrogen peroxide." [PomBase:mah]
synonym: "normal cell population growth in presence of hydrogen peroxide" EXACT [PomBase:mah]
synonym: "normal cell population growth on H2O2" EXACT [CHEBI:16240]
synonym: "normal cellular response to hydrogen peroxide" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on hydrogen peroxide" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on hydrogen peroxide" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-12T12:37:24Z

[Term]
id: FYPO:0000963
name: normal cell population growth on hydroxyurea
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing hydroxyurea." [PomBase:mah]
synonym: "normal cell population growth in presence of hydroxyurea" EXACT [PomBase:mah]
synonym: "normal cell population growth on HU" EXACT [PomBase:mah]
synonym: "normal growth on hydroxyurea" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on hydroxyurea" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-12T12:38:22Z

[Term]
id: FYPO:0000964
name: normal cell population growth on thiabendazole
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing thiabendazole." [PomBase:mah]
synonym: "normal cell population growth in presence of thiabendazole" EXACT [PomBase:mah]
synonym: "normal cell population growth on TBZ" EXACT [CHEBI:45979]
synonym: "normal cellular response to thiabendazole" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on thiabendazole" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on thiabendazole" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-12T12:39:39Z

[Term]
id: FYPO:0000965
name: abnormal histone H3-K14 acetylation at centromere outer repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 in centromere outer repeat regions is abnormal." [PomBase:mah]
synonym: "abnormal histone H3-K14 acetylation at centromere outer repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal histone H3K14 acetylation at centromere outer repeat" EXACT [GO:0044154, PomBase:vw]
is_a: FYPO:0000788 ! abnormal histone H3-K14 acetylation
created_by: midori
creation_date: 2012-04-12T12:56:33Z

[Term]
id: FYPO:0000966
name: increased histone H3-K14 acetylation at centromere outer repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 in centromere outer repeat regions occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased histone H3-K14 acetylation at centromere outer repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "increased histone H3K14 acetylation at centromere outer repeat" EXACT [GO:0044154, PomBase:vw]
is_a: FYPO:0000332 ! increased histone acetylation
is_a: FYPO:0000547 ! increased protein modification
is_a: FYPO:0000965 ! abnormal histone H3-K14 acetylation at centromere outer repeat
created_by: midori
creation_date: 2012-04-12T02:31:26Z

[Term]
id: FYPO:0000967
name: decreased histone H3-K14 acetylation at centromere outer repeat
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 in centromere outer repeat regions occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased histone H3-K14 acetylation at centromere outer repeat during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased histone H3K14 acetylation at centromere outer repeat" EXACT [GO:0044154, PomBase:vw]
synonym: "reduced histone H3-K14 acetylation at centromere outer repeat" EXACT [PomBase:mah]
is_a: FYPO:0000545 ! decreased protein modification
is_a: FYPO:0000965 ! abnormal histone H3-K14 acetylation at centromere outer repeat
is_a: FYPO:0001458 ! decreased histone H3-K14 acetylation
created_by: midori
creation_date: 2012-04-12T02:32:04Z

[Term]
id: FYPO:0000968
name: normal cellular response to stress
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to a stress is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular response to stress during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001342 ! cellular response phenotype during vegetative growth
created_by: midori
creation_date: 2012-04-19T01:25:21Z

[Term]
id: FYPO:0000969
name: normal cell population growth during cellular response to UV
def: "A cell growth phenotype in which cell population growth is normal (i.e. indistinguishable from wild type) during a cellular response to ultraviolet light." [PomBase:mah]
synonym: "normal cell population growth during cellular response to ultraviolet light" EXACT [PomBase:mah]
synonym: "normal cellular response to UV" RELATED [PomBase:mah]
synonym: "normal sensitivity to UV irradiation" RELATED [PomBase:vw]
synonym: "normal vegetative cell population growth during cellular response to UV" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-19T01:25:40Z

[Term]
id: FYPO:0000970
name: sensitive to mitomycin C
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to mitomycin C. Cells stop growing (and may die) at a concentration of mitomycin C that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to mitomycin C" EXACT [PomBase:mah]
synonym: "sensitive to mitomycin C during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-04-19T01:38:22Z

[Term]
id: FYPO:0000972
name: increased number of Rad22 foci
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites at which the protein Rad22 accumulates is greater than normal." [PMID:22064477, PomBase:mah]
comment: Because Rad22 often accumulates at double-strand breaks, consider also annotating to 'accumulation of double-strand break sites' (FYPO:0000455).
synonym: "increased number of Rad22 foci during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2012-04-19T02:09:54Z

[Term]
id: FYPO:0000973
name: normal cellular response to copper ion
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to copper ions is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular response to copper" EXACT [GO:0071280]
synonym: "normal cellular response to copper ion during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001318 ! normal cellular response to chemical stimulus during vegetative growth
created_by: midori
creation_date: 2012-04-19T02:30:26Z

[Term]
id: FYPO:0000974
name: normal cellular response to zinc ion
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to zinc ions is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular response to zinc" EXACT [GO:0071294]
synonym: "normal cellular response to zinc ion during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001318 ! normal cellular response to chemical stimulus during vegetative growth
created_by: midori
creation_date: 2012-04-19T02:31:30Z

[Term]
id: FYPO:0000975
name: normal cellular response to mercury ion
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to mercury ions is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular response to mercury" EXACT [GO:0071248]
synonym: "normal cellular response to mercury ion during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001318 ! normal cellular response to chemical stimulus during vegetative growth
created_by: midori
creation_date: 2012-04-19T02:32:52Z

[Term]
id: FYPO:0000976
name: normal cellular response to selenite ion
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to selenite ions is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular response to selenite" EXACT [PomBase:mah]
synonym: "normal cellular response to selenite ion during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001318 ! normal cellular response to chemical stimulus during vegetative growth
created_by: midori
creation_date: 2012-04-19T02:33:28Z

[Term]
id: FYPO:0000977
name: normal cellular response to silver ion
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to silver ions is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular response to silver ion during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001318 ! normal cellular response to chemical stimulus during vegetative growth
created_by: midori
creation_date: 2012-04-19T02:34:05Z

[Term]
id: FYPO:0000978
name: normal cell population growth on mevastatin
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing mevastatin." [PomBase:mah]
synonym: "normal cell population growth on compactin" EXACT [PomBase:al]
synonym: "normal growth on mevastatin" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on mevastatin" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-19T04:43:12Z

[Term]
id: FYPO:0000979
name: normal cell population growth on miconazole
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing miconazole." [PomBase:mah]
synonym: "normal growth on miconazole" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on miconazole" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-19T04:45:21Z

[Term]
id: FYPO:0000980
name: normal cell population growth on amphotericin B
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing amphotericin B." [PomBase:mah]
synonym: "normal growth on amphotericin B" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on amphotericin B" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-19T04:46:40Z

[Term]
id: FYPO:0000981
name: normal glutamate dehydrogenase (NAD+) activity
def: "A molecular function phenotype in which the observed rate of glutamate dehydrogenase activity using NAD+ as a cofactor is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal NAD-GDH activity" EXACT [PMID:7851743, PomBase:al]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2012-04-20T02:09:01Z

[Term]
id: FYPO:0000982
name: abnormal glutamate dehydrogenase (NADP+) activity
def: "A molecular function phenotype in which the observed rate of glutamate dehydrogenase activity using NAPD+ as a cofactor is abnormal." [PomBase:mah]
synonym: "abnormal NADP-GDH activity" EXACT [PMID:7851743, PomBase:al]
is_a: FYPO:0000689 ! abnormal oxidoreductase activity
created_by: midori
creation_date: 2012-04-20T02:12:39Z

[Term]
id: FYPO:0000983
name: decreased glutamate dehydrogenase (NADP+) activity
def: "A molecular function phenotype in which the observed rate of glutamate dehydrogenase activity using NAPD+ as a cofactor is decreased." [PomBase:mah]
synonym: "decreased NADP-GDH activity" EXACT [PMID:7851743, PomBase:al]
synonym: "reduced glutamate dehydrogenase (NADP+) activity" EXACT [PomBase:mah]
is_a: FYPO:0000690 ! decreased oxidoreductase activity
is_a: FYPO:0000982 ! abnormal glutamate dehydrogenase (NADP+) activity
created_by: midori
creation_date: 2012-04-20T02:12:45Z

[Term]
id: FYPO:0000984
name: abnormal transcriptional response to pheromone
def: "A conjugation phenotype in which regulation of transcription in response to mating pheromone is abnormal." [PomBase:mah]
synonym: "abnormal regulation of transcription from RNA polymerase II promoter by pheromones" EXACT [GO:0046019, PomBase:mah]
is_a: FYPO:0000143 ! transcription regulation phenotype
is_a: FYPO:0000302 ! abnormal response to pheromone
created_by: midori
creation_date: 2012-04-25T12:26:50Z

[Term]
id: FYPO:0000985
name: transcriptional response to pheromone at increased pheromone level
def: "A cellular response phenotype in which pheromone-responsive positive regulation of transcription occurs only at a higher level of pheromone than normal." [PomBase:mah]
synonym: "decreased sensitivity of positive regulation of transcription from RNA polymerase II promoter by pheromones to pheromone" RELATED [PomBase:mah]
synonym: "decreased transcriptional response to pheromone" RELATED [PomBase:mah]
synonym: "resistant to pheromone" RELATED [PomBase:al, PomBase:mah]
is_a: FYPO:0000623 ! abnormal positive regulation of transcription
is_a: FYPO:0000984 ! abnormal transcriptional response to pheromone
created_by: midori
creation_date: 2012-04-25T12:29:45Z

[Term]
id: FYPO:0000986
name: increased transcriptional response to pheromone at normal pheromone level
def: "A cellular response phenotype in which pheromone-responsive positive regulation of transcription results in a higher-than-normal level of transcription at a given pheromone level." [PomBase:mah]
synonym: "increased sensitivity of positive regulation of transcription from RNA polymerase II promoter by pheromones to pheromone" RELATED [PomBase:mah]
synonym: "increased transcriptional response to pheromone" RELATED [PomBase:mah]
synonym: "sensitive to pheromone" RELATED [PomBase:al, PomBase:mah]
is_a: FYPO:0000623 ! abnormal positive regulation of transcription
is_a: FYPO:0000984 ! abnormal transcriptional response to pheromone
created_by: midori
creation_date: 2012-04-25T12:34:59Z

[Term]
id: FYPO:0000987
name: decreased transcriptional response to pheromone at normal pheromone level
def: "A cellular response phenotype in which pheromone-responsive positive regulation of transcription results in a lower-than-normal level of transcription at a given pheromone level." [PomBase:mah]
synonym: "decreased sensitivity of positive regulation of transcription from RNA polymerase II promoter by pheromones to pheromone" RELATED [PomBase:mah]
synonym: "decreased transcriptional response to pheromone" RELATED [PomBase:mah]
synonym: "reduced transcriptional response to pheromone at normal pheromone level" EXACT [PomBase:mah]
synonym: "resistant to pheromone" RELATED [PomBase:al, PomBase:mah]
is_a: FYPO:0000623 ! abnormal positive regulation of transcription
is_a: FYPO:0000984 ! abnormal transcriptional response to pheromone
created_by: midori
creation_date: 2012-04-25T12:49:41Z

[Term]
id: FYPO:0000988
name: normal cellular response to arsenic
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to arsenic is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular response to arsenic during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001318 ! normal cellular response to chemical stimulus during vegetative growth
created_by: midori
creation_date: 2012-04-25T01:27:55Z

[Term]
id: FYPO:0000989
name: altered level of substance in cell
def: "A cell phenotype in which the amount of a specific substance measured in a cell differs from normal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "abnormal level of substance in cell" EXACT [PomBase:mah]
is_a: FYPO:0000002 ! cell phenotype
is_a: FYPO:0001985 ! abnormal phenotype
created_by: midori
creation_date: 2012-04-25T02:06:49Z

[Term]
id: FYPO:0000990
name: increased level of substance in cell
def: "A cell phenotype in which the amount of a specific substance measured in a cell is higher than normal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "increased accumulation of substance in cell" RELATED [PomBase:mah]
is_a: FYPO:0000989 ! altered level of substance in cell
created_by: midori
creation_date: 2012-04-25T02:07:28Z

[Term]
id: FYPO:0000991
name: decreased level of substance in cell
def: "A cell phenotype in which the amount of a specific substance measured in a cell is lower than normal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "reduced level of substance in cell" EXACT [PomBase:mah]
is_a: FYPO:0000989 ! altered level of substance in cell
created_by: midori
creation_date: 2012-04-25T02:08:00Z

[Term]
id: FYPO:0000992
name: altered cellular phosphatidylinositol-3-phosphate level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-3-phosphate measured in a cell differs from normal." [PomBase:mah]
synonym: "abnormal cellular phosphatidylinositol-3-phosphate level" EXACT [PomBase:mah]
synonym: "altered cellular phosphatidylinositol-3-phosphate level during vegetative growth" EXACT [PomBase:mah]
synonym: "altered cellular PI-3-P level" EXACT [PomBase:al]
synonym: "altered PI-3-P accumulation" RELATED [PomBase:al]
is_a: FYPO:0001290 ! altered cellular phosphoinositide level
created_by: midori
creation_date: 2012-04-25T02:15:24Z

[Term]
id: FYPO:0000993
name: decreased cellular phosphatidylinositol-3-phosphate level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-3-phosphate measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular phosphatidylinositol-3-phosphate level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased cellular PI-3-P level" EXACT [PomBase:al]
synonym: "decreased PI-3-P accumulation" RELATED [PomBase:al]
synonym: "reduced cellular phosphatidylinositol-3-phosphate level" EXACT [PomBase:mah]
is_a: FYPO:0000992 ! altered cellular phosphatidylinositol-3-phosphate level
is_a: FYPO:0001289 ! decreased phospholipid level
created_by: midori
creation_date: 2012-04-25T02:18:12Z

[Term]
id: FYPO:0000994
name: increased cellular phosphatidylinositol-4-phosphate level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-4-phosphate measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular phosphatidylinositol-4-phosphate level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased cellular PI-4-P level" EXACT [PomBase:al]
synonym: "increased PI-4-P accumulation" RELATED [PomBase:al]
is_a: FYPO:0001015 ! altered cellular phosphatidylinositol-4-phosphate level
is_a: FYPO:0001286 ! increased cellular phosphoinositide level
created_by: midori
creation_date: 2012-04-25T02:19:52Z

[Term]
id: FYPO:0000995
name: abnormal cell morphology during nitrogen starvation
def: "A cell phenotype in which cell morphology is altered when the cell is subject to nitrogen starvation." [PMID:19366728, PomBase:mah]
is_a: FYPO:0000005 ! abnormal cell morphology
created_by: midori
creation_date: 2012-04-25T02:40:49Z

[Term]
id: FYPO:0000996
name: bottle-shaped cell during nitrogen starvation
def: "A cell morphology phenotype in which the cell takes on a bottle shape, i.e. tapers at one end to a diameter smaller than the other, when the cell is subject to nitrogen starvation." [PMID:19366728, PomBase:mah]
synonym: "cell morphology, bottle/skittle during nitrogen starvation" EXACT [PomBase:mah]
synonym: "skittle-shaped cell during nitrogen starvation" EXACT [PomBase:mah]
is_a: FYPO:0000014 ! bottle-shaped cell
is_a: FYPO:0000995 ! abnormal cell morphology during nitrogen starvation
created_by: midori
creation_date: 2012-04-25T02:41:14Z

[Term]
id: FYPO:0000997
name: pear-shaped cell during nitrogen starvation
def: "A cell morphology phenotype in which a cell is shaped in the form of a pear when the cell is subject to nitrogen starvation." [PMID:19366728, PomBase:mah]
comment: Discussing what this means; may rename.
synonym: "cell morphology, pear shaped during nitrogen starvation" EXACT [PomBase:mah]
is_a: FYPO:0000020 ! pear-shaped cell
is_a: FYPO:0000995 ! abnormal cell morphology during nitrogen starvation
created_by: midori
creation_date: 2012-04-25T02:41:20Z

[Term]
id: FYPO:0000998
name: elongated cell during nitrogen starvation
def: "A cell morphology phenotype in which a cell becomes longer than normal, i.e. the maximum distance between the cell ends is greater than normal, when the cell is subject to nitrogen starvation." [PMID:19366728, PomBase:mah]
synonym: "cell morphology, elongated cell during nitrogen starvation" EXACT [PomBase:mah]
synonym: "long cell during nitrogen starvation" EXACT [PomBase:vw]
is_a: FYPO:0000017 ! elongated cell
is_a: FYPO:0000995 ! abnormal cell morphology during nitrogen starvation
created_by: midori
creation_date: 2012-04-25T02:41:23Z

[Term]
id: FYPO:0000999
name: enlarged nucleus during nitrogen starvation
def: "A cellular structure phenotype in which the nucleus is larger than normal when the cell is subject to nitrogen starvation." [PMID:19366728, PomBase:mah]
synonym: "enlarged nuclei during nitrogen starvation" EXACT [PomBase:vw]
is_a: FYPO:0000344 ! enlarged nucleus
created_by: midori
creation_date: 2012-04-25T03:07:07Z

[Term]
id: FYPO:0001000
name: normal cell cycle arrest in mitotic G1 phase during nitrogen starvation
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested normally in G1 phase when the cell is subject to nitrogen starvation." [PMID:19366728, PomBase:mah]
synonym: "mitotic G1 phase arrest during nitrogen starvation" EXACT [PomBase:mah]
is_a: FYPO:0000298 ! cellular response phenotype
is_a: FYPO:0000445 ! cell cycle arrest in mitotic G1 phase
is_a: FYPO:0001025 ! normally arrested cell cycle progression
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
created_by: midori
creation_date: 2012-04-25T03:36:56Z

[Term]
id: FYPO:0001001
name: abnormal cell cycle arrest in mitotic G2 phase during nitrogen starvation
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested in G2 phase, instead of the normal G1 phase, when the cell is subject to nitrogen starvation." [PMID:19366728, PomBase:mah]
synonym: "mitotic G2 phase arrest during nitrogen starvation" EXACT [PomBase:mah]
is_a: FYPO:0000710 ! abnormal cell cycle arrest in response to nitrogen starvation
is_a: FYPO:0001151 ! cell cycle arrest in mitotic G2 phase during starvation
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
created_by: midori
creation_date: 2012-04-25T03:39:33Z

[Term]
id: FYPO:0001002
name: abolished cell division prior to G0 entry
def: "A cellular process phenotype in which a cell does not undergo the normal two rounds of cell division prior to entering quiescence (G0)." [PMID:19366728, PomBase:mah]
synonym: "cell division prior to G0 entry abolished" EXACT [PomBase:mah]
synonym: "loss of pre-quiescence cell divisions following nitrogen starvation" EXACT [PomBase:al]
is_a: FYPO:0000427 ! abnormal G1 to G0 transition
created_by: midori
creation_date: 2012-04-25T03:42:48Z

[Term]
id: FYPO:0001003
name: fragmented vacuoles during nitrogen starvation
def: "A cell phenotype in which vacuoles are broken into more, smaller fragments than normal when the cell is subject to nitrogen starvation." [PomBase:mah]
synonym: "vacuole organization defects, fragmented vacuoles during nitrogen starvation" EXACT [PomBase:mah]
is_a: FYPO:0000281 ! fragmented vacuoles
created_by: midori
creation_date: 2012-04-25T03:48:58Z

[Term]
id: FYPO:0001004
name: viable upon G0 to G1 transition
def: "A cell phenotype in which cells to resume growth normally upon exiting G0 phase." [PMID:19366728, PomBase:mah]
is_a: FYPO:0000124 ! viable cell
is_a: FYPO:0000257 ! normal phenotype
created_by: midori
creation_date: 2012-04-25T03:50:33Z

[Term]
id: FYPO:0001005
name: DNA fragmentation during nitrogen starvation
def: "A cell phenotype in which DNA is broken into small fragments when the cell is subject to nitrogen starvation." [PMID:19366728, PomBase:mah]
is_a: FYPO:0000160 ! DNA fragmentation
created_by: midori
creation_date: 2012-04-25T04:01:19Z

[Term]
id: FYPO:0001006
name: multinucleate dumbbell-shaped cell
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell contains more than one nucleus, is elongated, is inviable, and is shaped in the form of a dumbbell, i.e. having two connected, rounded parts of approximately equal size, tapering towards a narrower region in the center of the long axis. In a cell with this phenotype, the diameter at the ends may be much greater than in wild-type cells. Septal material may accumulate in patches at the cell surface, but no septum forms." [PMID:8834798, PomBase:mah, PomBase:vw]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "elongated, multinucleate dumbbell-shaped cell" EXACT [PomBase:mah]
synonym: "inviable, elongated, multinucleate dumbbell-shaped cell" EXACT [PomBase:vw]
synonym: "long, multinucleate dumbbell-shaped cell" EXACT [PomBase:vw]
synonym: "multinucleate dumbbell-shaped cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000779 ! dumbbell-shaped cell
is_a: FYPO:0002049 ! elongated multinucleate aseptate vegetative cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000061 ! multinucleate
relationship: has_part FYPO:0000779 ! dumbbell-shaped cell
relationship: has_part FYPO:0000949 ! aseptate
created_by: midori
creation_date: 2012-04-25T04:07:50Z

[Term]
id: FYPO:0001007
name: normal mitosis
def: "A cellular process phenotype in which mitosis is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "mitosis: normal" EXACT [PomBase:mah]
synonym: "normal mitosis during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2012-04-25T04:16:58Z

[Term]
id: FYPO:0001008
name: contractile ring absent
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the actomyosin contractile ring is absent from the cell." [PomBase:mah]
comment: In the absence of filamentous actin, a ring structure may form, but is not considered a contractile ring.
synonym: "actomyosin contractile ring absent" EXACT [PomBase:mah]
synonym: "contractile ring absent during vegetative growth" EXACT [PomBase:mah]
synonym: "contractile ring actin absent" NARROW [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
created_by: midori
creation_date: 2012-04-25T04:19:40Z

[Term]
id: FYPO:0001009
name: abolished actomyosin contractile ring assembly
def: "A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which the assembly and distribution of actin filament bundles does not occur, resulting in the failure to form an actomyosin contractile ring." [PMID:19713940, PomBase:mah]
comment: Note that a ring structure may form without filamentous actin, but a ring lacking F-actin is not considered a contractile ring.
synonym: "abolished actomyosin contractile ring assembly during vegetative growth" EXACT [PomBase:mah]
synonym: "abolished actomyosin contractile ring formation" RELATED [GO:0000915, PomBase:mah]
synonym: "abolished contractile ring assembly" EXACT [PomBase:mah]
synonym: "abolished cytokinetic ring assembly" RELATED [PomBase:vw]
synonym: "abolished cytokinetic ring formation" RELATED [PomBase:vw]
synonym: "actomyosin contractile ring assembly abolished" EXACT [PomBase:mah]
synonym: "cytokinesis defects, contractile ring actin, absent" RELATED [PomBase:mah]
is_a: FYPO:0000161 ! abnormal actomyosin contractile ring assembly
relationship: has_output FYPO:0001008 ! contractile ring absent
created_by: midori
creation_date: 2012-04-25T04:37:10Z

[Term]
id: FYPO:0001010
name: abolished actin filament organization
def: "A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which the assembly and distribution of cytoskeletal structures comprising actin filaments does not occur." [PomBase:mah]
synonym: "abolished actin filament organisation" EXACT [PomBase:mah]
synonym: "abolished actin filament organization during vegetative growth" EXACT [PomBase:mah]
synonym: "actin filament organization abolished" EXACT [PomBase:mah]
is_a: FYPO:0000727 ! abnormal actin filament organization
relationship: has_output FYPO:0001011 ! filamentous actin absent
created_by: midori
creation_date: 2012-04-25T04:55:17Z

[Term]
id: FYPO:0001011
name: filamentous actin absent
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which cells do not contain filamentous actin structures, such as cortical patches or dots, or rings." [PomBase:mah]
synonym: "actin filaments absent" EXACT [PomBase:mah]
synonym: "F-actin absent" EXACT [PomBase:mah]
synonym: "filamentous actin absent during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
created_by: midori
creation_date: 2012-04-25T04:58:49Z

[Term]
id: FYPO:0001012
name: growth auxotrophic for uracil
def: "Auxotrophy in which uracil is required for vegetative cell growth." [PomBase:mah]
synonym: "growth auxotrophic for uracil during vegetative growth" EXACT [PomBase:mah]
synonym: "uracil auxotrophy" EXACT [PomBase:mah]
is_a: FYPO:0000128 ! auxotrophy
created_by: midori
creation_date: 2012-04-26T12:15:11Z

[Term]
id: FYPO:0001013
name: abnormal membrane organization
def: "A cellular process phenotype in which cellular membrane organization is abnormal. Cellular membrane organization results in the assembly, arrangement of constituent parts, or disassembly of a lipid bilayer membrane, such as the plasma membrane or an organelle membrane." [GO:0016044, PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "abnormal cellular membrane organization" EXACT [GO:0016044, PomBase:mah]
synonym: "abnormal membrane organisation" EXACT [PomBase:mah]
is_a: FYPO:0000335 ! abnormal cellular component organization
created_by: midori
creation_date: 2012-04-26T12:57:24Z

[Term]
id: FYPO:0001014
name: abnormal membrane organization during nitrogen starvation
def: "A cellular process phenotype in which cellular membrane organization is abnormal when the cell is subject to nitrogen starvation." [PomBase:mah]
synonym: "abnormal cellular membrane organization" EXACT [GO:0016044, PomBase:mah]
synonym: "abnormal membrane organisation" EXACT [PomBase:mah]
is_a: FYPO:0001013 ! abnormal membrane organization
created_by: midori
creation_date: 2012-04-26T12:59:57Z

[Term]
id: FYPO:0001015
name: altered cellular phosphatidylinositol-4-phosphate level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-4-phosphate measured in a cell differs from normal." [PomBase:mah]
synonym: "abnormal cellular phosphatidylinositol-4-phosphate level" EXACT [PomBase:mah]
synonym: "altered cellular phosphatidylinositol-4-phosphate level during vegetative growth" EXACT [PomBase:mah]
synonym: "altered cellular PI-4-P level" EXACT [PomBase:al]
synonym: "altered PI-4-P accumulation" RELATED [PomBase:al]
is_a: FYPO:0001290 ! altered cellular phosphoinositide level
created_by: midori
creation_date: 2012-04-25T02:15:24Z

[Term]
id: FYPO:0001016
name: normal cell population growth on actinomycin D
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing actinomycin D." [PomBase:mah]
synonym: "normal cell population growth in presence of actinomycin D" EXACT [PomBase:mah]
synonym: "normal cellular response to actinomycin D" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on actinomycin D" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on actinomycin D" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-26T03:36:00Z

[Term]
id: FYPO:0001017
name: premature activation of bipolar cell growth
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which activation of bipolar cell growth occurs prematurely; results in early occurrence of new end take-off." [PomBase:mah]
synonym: "early NETO" EXACT [PomBase:mah]
synonym: "premature activation of bipolar vegetative cell growth" EXACT [PomBase:mah]
synonym: "premature NETO" EXACT [PomBase:mah]
synonym: "premature new end take-off" EXACT [PomBase:mah]
is_a: FYPO:0000147 ! abnormal activation of bipolar cell growth
created_by: midori
creation_date: 2012-04-30T11:46:57Z

[Term]
id: FYPO:0001018
name: abolished activation of bipolar cell growth
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which activation of bipolar cell growth does not occur; results in absence of new end take-off." [PomBase:mah]
synonym: "abolished activation of bipolar vegetative cell growth" EXACT [PomBase:mah]
synonym: "abolished NETO" EXACT [PomBase:mah]
synonym: "abolished new end take-off" EXACT [PomBase:mah]
synonym: "absence of NETO" EXACT [PomBase:vw]
synonym: "activation of bipolar cell growth abolished" EXACT [PomBase:mah]
is_a: FYPO:0000147 ! abnormal activation of bipolar cell growth
relationship: has_output FYPO:0001391 ! mislocalized septum, near new end
created_by: midori
creation_date: 2012-04-30T11:49:16Z

[Term]
id: FYPO:0001019
name: monopolar actin cortical patch localization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized to only one end of a cell." [PomBase:mah]
synonym: "monopolar actin cortical patch localisation" EXACT [PomBase:mah]
synonym: "monopolar actin cortical patch localization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000190 ! abnormal actin cortical patch localization
created_by: midori
creation_date: 2012-04-30T02:17:33Z

[Term]
id: FYPO:0001020
name: normal cell population growth on calcium ion
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing calcium ions." [PomBase:mah]
synonym: "normal cell population growth in presence of calcium ions" EXACT [PomBase:mah]
synonym: "normal cell population growth on calcium" EXACT [PomBase:mah]
synonym: "normal cellular response to calcium ion" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on calcium ion" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on calcium ion" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-30T02:48:06Z

[Term]
id: FYPO:0001021
name: normal cell population growth during cellular response to osmotic stress
def: "A cell growth phenotype in which cell population growth is normal (i.e. indistinguishable from wild type) during a cellular response to osmotic stress." [PomBase:mah]
synonym: "normal cellular response to osmotic stress" RELATED [PomBase:mah]
synonym: "normal vegetative cell population growth during cellular response to osmotic stress" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-30T02:50:20Z

[Term]
id: FYPO:0001022
name: normal cell population growth during cellular response to high osmolarity
def: "A cell growth phenotype in which cell population growth is normal (i.e. indistinguishable from wild type) during a cellular response to high osmolarity." [PomBase:mah]
synonym: "normal cell population growth during cellular response to hyperosmotic conditions" EXACT [PomBase:mah]
synonym: "normal cellular response to high osmolarity" RELATED [PomBase:mah]
synonym: "normal vegetative cell population growth during cellular response to high osmolarity" EXACT [PomBase:mah]
is_a: FYPO:0001021 ! normal cell population growth during cellular response to osmotic stress
created_by: midori
creation_date: 2012-04-30T02:50:58Z

[Term]
id: FYPO:0001023
name: normal cell population growth on cisplatin
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing cisplatin." [PomBase:mah]
synonym: "normal cell population growth in presence of cisplatin" EXACT [PomBase:mah]
synonym: "normal cell population growth on cis-DDP" EXACT [CHEBI:27899]
synonym: "normal cell population growth on DDP" BROAD [PomBase:mah]
synonym: "normal cellular response to cisplatin" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on cisplatin" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on cisplatin" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-04-30T02:59:00Z

[Term]
id: FYPO:0001024
name: cell cycle arrest phenotype
def: "A cell cycle phenotype that affects or involves the normal or abnormal occurrence of cell cycle arrest. In cell cycle arrest, progression through the cell cycle is halted during one of the normal phases (G1, S, G2, or M)." [PomBase:mah]
synonym: "cell cycle arrest phenotype during vegetative growth" EXACT [PomBase:mah]
synonym: "fission yeast cell cycle arrest phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000631 ! cell cycle phenotype
created_by: midori
creation_date: 2012-05-09T01:15:41Z

[Term]
id: FYPO:0001025
name: normally arrested cell cycle progression
def: "A cellular process phenotype in which cell cycle progression is arrested under conditions where arrest normally occurs." [PomBase:mah]
synonym: "normal cell cycle arrest" EXACT [PomBase:mah]
synonym: "normal cell cycle arrest in mitotic interphase" EXACT [PomBase:mah]
is_a: FYPO:0000145 ! regulation phenotype
is_a: FYPO:0000627 ! normal cellular process
is_a: FYPO:0001024 ! cell cycle arrest phenotype
created_by: midori
creation_date: 2012-05-09T01:38:00Z

[Term]
id: FYPO:0001026
name: abnormal occurrence of normal cell cycle arrest
def: "A cellular process phenotype in which a cell cycle arrest that normally occurs is abnormal (does not occur, or occurs abnormally)." [PomBase:mah]
is_a: FYPO:0000011 ! abnormal cell cycle progression
is_a: FYPO:0000145 ! regulation phenotype
is_a: FYPO:0001024 ! cell cycle arrest phenotype
created_by: midori
creation_date: 2012-05-09T01:43:53Z

[Term]
id: FYPO:0001027
name: normal cell cycle arrest in mitotic G2 phase during glucose starvation
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested normally in G2 phase when the cell is subject to glucose starvation." [PomBase:al, PomBase:mah]
comment: Note that this term should be used only for cell cycle arrest that occurs in mutants. For phenotypes affecting the G1 cell cycle that normally occurs in response to mating pheromone, see 'abnormal cell cycle arrest in response to pheromone' (FYPO:0000530) and its child terms.
synonym: "mitotic G1 phase arrest during glucose starvation" EXACT [PomBase:mah]
is_a: FYPO:0000298 ! cellular response phenotype
is_a: FYPO:0001025 ! normally arrested cell cycle progression
is_a: FYPO:0001151 ! cell cycle arrest in mitotic G2 phase during starvation
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
created_by: midori
creation_date: 2012-05-09T01:54:19Z

[Term]
id: FYPO:0001028
name: abnormal cell cycle arrest in mitotic interphase
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested in any part of interphase, under conditions where arrest is not a normal occurrence." [PomBase:mah]
synonym: "abnormal mitotic interphase cell cycle arrest" EXACT [PomBase:mah]
is_a: FYPO:0000502 ! abnormally arrested mitotic cell cycle
is_a: FYPO:0000837 ! cell cycle arrest in mitotic interphase
created_by: midori
creation_date: 2012-05-09T02:46:23Z

[Term]
id: FYPO:0001029
name: resistance to canavanine
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of canavanine than normal." [PomBase:mah]
synonym: "resistance to canavanine during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to canavanine" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-05-15T16:55:19Z

[Term]
id: FYPO:0001030
name: normal cell population growth on dithiothreitol
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing dithiothreitol." [PomBase:mah]
synonym: "normal cell population growth in presence of dithiothreitol" EXACT [PomBase:mah]
synonym: "normal cell population growth on 1,4-dithiothreitol" EXACT [CHEBI:18320]
synonym: "normal cell population growth on DTT" EXACT [PomBase:mah]
synonym: "normal cellular response to dithiothreitol" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on dithiothreitol" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on dithiothreitol" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-05-09T04:26:29Z

[Term]
id: FYPO:0001031
name: accumulation of single-strand break sites
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites of single-strand breaks in DNA is greater than normal." [PomBase:mah]
comment: Because Rad22 often accumulates at double-strand breaks, consider also annotating to 'increased number of Rad22 foci' (FYPO:0000972).
synonym: "accumulation of single-strand break sites during vegetative growth" EXACT [PomBase:mah]
synonym: "increased number of single-strand break sites" EXACT [PomBase:mah]
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2012-05-09T04:33:36Z

[Term]
id: FYPO:0001032
name: resistance to camptothecin
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of camptothecin than normal." [PomBase:mah]
synonym: "resistance to camptothecin during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to camptothecin" EXACT [PomBase:mah]
synonym: "resistant to CPT" EXACT [CHEBI:27656, PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-05-09T04:35:09Z

[Term]
id: FYPO:0001033
name: normal double-strand break repair
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which double-strand break repair is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal double-strand break repair during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000859 ! normal metabolic process
is_a: FYPO:0000968 ! normal cellular response to stress
is_a: FYPO:0001346 ! DNA metabolism phenotype during vegetative growth
created_by: midori
creation_date: 2012-05-09T04:36:23Z

[Term]
id: FYPO:0001034
name: resistance to tunicamycin
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of tunicamycin than normal." [PomBase:mah]
synonym: "resistance to tunicamycin during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to TM" EXACT [PomBase:al]
synonym: "resistant to tunicamycin" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-05-09T04:43:09Z

[Term]
id: FYPO:0001035
name: increased cell wall thickness
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the fungal-type cell wall is thicker than normal." [PomBase:mah]
synonym: "increased cell wall thickness during vegetative growth" EXACT [PomBase:mah]
synonym: "thickened cell wall" EXACT [PomBase:mah]
is_a: FYPO:0000351 ! abnormal cell wall morphology
created_by: midori
creation_date: 2012-05-09T04:44:26Z

[Term]
id: FYPO:0001036
name: delaminated cell wall
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the fungal-type cell wall is delaminated, i.e. one or more of its layers peels off." [PomBase:al, PomBase:mah]
synonym: "delaminate cell wall" EXACT [PomBase:mah]
synonym: "delaminated cell wall during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000351 ! abnormal cell wall morphology
created_by: midori
creation_date: 2012-05-09T04:45:40Z

[Term]
id: FYPO:0001037
name: normal cell population growth during cellular response to salt stress
def: "A cell growth phenotype in which cell population growth is normal (i.e. indistinguishable from wild type) during a cellular response to salt stress." [PomBase:mah]
synonym: "normal cell population growth during cellular response to ionic osmotic stress" EXACT [GO:0071472, PomBase:mah]
synonym: "normal cellular response to salt stress" RELATED [PomBase:mah]
synonym: "normal cellular salinity response" RELATED [GO:0071472, PomBase:mah]
synonym: "normal vegetative cell population growth during cellular response to salt stress" EXACT [PomBase:mah]
is_a: FYPO:0001021 ! normal cell population growth during cellular response to osmotic stress
created_by: midori
creation_date: 2012-05-09T04:57:53Z

[Term]
id: FYPO:0001038
name: increased protein phosphorylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased protein phosphorylation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000547 ! increased protein modification
is_a: FYPO:0000775 ! abnormal protein phosphorylation
created_by: midori
creation_date: 2012-05-09T05:01:01Z

[Term]
id: FYPO:0001039
name: abnormal thiamine diphosphokinase activity
def: "A molecular function phenotype in which the observed rate of thiamine diphosphokinase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-05-09T05:07:50Z

[Term]
id: FYPO:0001040
name: decreased thiamine diphosphokinase activity
def: "A molecular function phenotype in which the observed rate of thiamine diphosphokinase activity is decreased." [PomBase:mah]
synonym: "reduced thiamine diphosphokinase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0001039 ! abnormal thiamine diphosphokinase activity
created_by: midori
creation_date: 2012-05-09T05:07:58Z

[Term]
id: FYPO:0001041
name: increased cellular thiamine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of thiamine measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular thiamine level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased thiamine accumulation" RELATED [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-05-09T05:09:40Z

[Term]
id: FYPO:0001042
name: inviable after spore germination, single or double cell division
def: "A phenotype in which a spore germinates to produce a cell of normal morphology that undergoes one or two rounds of cell division, and then dies." [PomBase:al, PomBase:mah]
synonym: "essential; germinating spore, single or double cell division" RELATED [PomBase:mah]
synonym: "inviable following spore germination, single or double cell division" EXACT [PomBase:mah]
synonym: "inviable germinating spore, single or double cell division" RELATED [PomBase:mah]
is_a: FYPO:0000316 ! inviable after spore germination
created_by: midori
creation_date: 2012-05-09T05:12:57Z

[Term]
id: FYPO:0001043
name: increased mating efficiency
def: "A biological process phenotype in which the observed mating efficiency is higher than normal." [PomBase:al, PomBase:mah]
comment: Note that mating efficiency is often measured by counting zygotes plus asci, sometimes also including spores, so a change in measured mating efficiency may reflect a change in conjugation frequency (see FYPO:0000031 and its descendants), a change in sporulation (see FYPO:0000121 and its descendants), or both. For this reason, this term is not a child of 'mating phenotype' (FYPO:0000031).
synonym: "mating efficiency: increased" EXACT [SGD:phenotype_annotation]
is_a: FYPO:0000300 ! biological process phenotype
created_by: midori
creation_date: 2012-05-09T05:15:28Z

[Term]
id: FYPO:0001044
name: abnormal acid phosphatase activity
def: "A molecular function phenotype in which the observed rate of acid phosphatase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-05-10T04:20:28Z

[Term]
id: FYPO:0001045
name: decreased acid phosphatase activity
def: "A molecular function phenotype in which the observed rate of acid phosphatase activity is decreased." [PomBase:mah]
synonym: "reduced acid phosphatase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0001044 ! abnormal acid phosphatase activity
created_by: midori
creation_date: 2012-05-10T04:20:35Z

[Term]
id: FYPO:0001046
name: premature mitosis
def: "A cellular process phenotype in which cells enter mitosis earlier, relative to cell size or DNA integrity checkpoint status, than normal." [PomBase:mah]
synonym: "early mitosis" EXACT [PomBase:mah]
synonym: "premature mitosis during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001204 ! mistimed mitosis
created_by: midori
creation_date: 2012-05-11T01:28:00Z

[Term]
id: FYPO:0001047
name: mitotic catastrophe
def: "An inviable phenotype in which a cell enters mitosis prematurely, undergoes abnormal mitotic chromosome segregation, and subsequently dies." [PomBase:mah]
comment: Note that in higher eukaryotes, mitotic catastrophe is more broadly defined as any phenotype in which cells undergo an aberrant mitosis that arrests before completion, and subsequently die by necrosis or apoptosis. Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "mitotic catastrophe during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000141 ! abnormal mitotic sister chromatid segregation
is_a: FYPO:0001489 ! inviable vegetative cell
relationship: has_part FYPO:0000141 ! abnormal mitotic sister chromatid segregation
relationship: has_part FYPO:0001489 ! inviable vegetative cell
created_by: midori
creation_date: 2012-05-11T01:34:45Z

[Term]
id: FYPO:0001048
name: mitotic catastrophe with cut
def: "An inviable phenotype in which a cell undergoes mitotic catastrophe (i.e. enters mitosis prematurely and with defective chromosome segregation), and then undergoes septation and subsequently dies." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "cut with mitotic catastrophe" EXACT [PomBase:mah]
synonym: "mitotic catastrophe with cut during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000229 ! cut
is_a: FYPO:0001047 ! mitotic catastrophe
relationship: has_part FYPO:0000141 ! abnormal mitotic sister chromatid segregation
relationship: has_part FYPO:0000229 ! cut
relationship: has_part FYPO:0001204 ! mistimed mitosis
relationship: has_part FYPO:0001489 ! inviable vegetative cell
created_by: midori
creation_date: 2012-05-11T01:37:41Z

[Term]
id: FYPO:0001049
name: mitotic catastrophe, small cell
def: "An inviable phenotype in which a cell undergoes mitotic catastrophe (i.e. enters mitosis prematurely and with defective chromosome segregation), entering mitosis when smaller than wild type." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "mitotic catastrophe, small cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000951 ! small inviable vegetative cell
is_a: FYPO:0001047 ! mitotic catastrophe
relationship: has_part FYPO:0000141 ! abnormal mitotic sister chromatid segregation
relationship: has_part FYPO:0000951 ! small inviable vegetative cell
relationship: has_part FYPO:0001204 ! mistimed mitosis
relationship: has_part FYPO:0001489 ! inviable vegetative cell
created_by: midori
creation_date: 2012-05-11T01:59:31Z

[Term]
id: FYPO:0001050
name: mitotic catastrophe, normal size cell
def: "An inviable phenotype in which a cell undergoes mitotic catastrophe (i.e. enters mitosis prematurely and with defective chromosome segregation), entering mitosis at the same size as wild type." [PomBase:mah]
comment: Note that mitotic catastrophe in normal-size cells is usually interpreted to mean that cells enter mitosis despite failing to activate a DNA integrity checkpoint. Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "mitotic catastrophe, normal size cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001047 ! mitotic catastrophe
relationship: has_part FYPO:0000141 ! abnormal mitotic sister chromatid segregation
relationship: has_part FYPO:0001124 ! normal cell size
relationship: has_part FYPO:0001204 ! mistimed mitosis
relationship: has_part FYPO:0001489 ! inviable vegetative cell
created_by: midori
creation_date: 2012-05-11T02:09:56Z

[Term]
id: FYPO:0001051
name: mitotic catastrophe, elongated cell
def: "An inviable phenotype in which a cell undergoes mitotic catastrophe (i.e. enters mitosis prematurely and with defective chromosome segregation), entering mitosis when longer than wild type." [PomBase:mah]
comment: Note that mitotic catastrophe in elongated cells is usually interpreted to mean that cells enter mitosis despite failing to maintain a DNA integrity checkpoint. Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "mitotic catastrophe, elongated cell during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic catastrophe, long cell" EXACT [PomBase:vw]
is_a: FYPO:0001047 ! mitotic catastrophe
is_a: FYPO:0001490 ! elongated inviable vegetative cell
relationship: has_part FYPO:0000141 ! abnormal mitotic sister chromatid segregation
relationship: has_part FYPO:0001204 ! mistimed mitosis
relationship: has_part FYPO:0001489 ! inviable vegetative cell
relationship: has_part FYPO:0001490 ! elongated inviable vegetative cell
created_by: midori
creation_date: 2012-05-11T02:16:25Z

[Term]
id: FYPO:0001052
name: mitotic catastrophe with cut, small cell
def: "An inviable phenotype in which a cell undergoes mitotic catastrophe (i.e. enters mitosis prematurely and with defective chromosome segregation), entering mitosis when smaller than wild type, and then undergoes septation and subsequently dies." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "cut with mitotic catastrophe, small cell" EXACT [PomBase:mah]
synonym: "mitotic catastrophe with cut, small cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001048 ! mitotic catastrophe with cut
is_a: FYPO:0001049 ! mitotic catastrophe, small cell
relationship: has_part FYPO:0000141 ! abnormal mitotic sister chromatid segregation
relationship: has_part FYPO:0000229 ! cut
relationship: has_part FYPO:0000951 ! small inviable vegetative cell
relationship: has_part FYPO:0001204 ! mistimed mitosis
relationship: has_part FYPO:0001489 ! inviable vegetative cell
created_by: midori
creation_date: 2012-05-11T02:38:12Z

[Term]
id: FYPO:0001053
name: mitotic catastrophe with cut, normal size cell
def: "An inviable phenotype in which a cell undergoes mitotic catastrophe (i.e. enters mitosis prematurely and with defective chromosome segregation), entering mitosis at the same size as wild type, and then undergoes septation and subsequently dies." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "cut with mitotic catastrophe, normal size cell" EXACT [PomBase:mah]
synonym: "mitotic catastrophe with cut, normal size cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001048 ! mitotic catastrophe with cut
is_a: FYPO:0001050 ! mitotic catastrophe, normal size cell
relationship: has_part FYPO:0000141 ! abnormal mitotic sister chromatid segregation
relationship: has_part FYPO:0000229 ! cut
relationship: has_part FYPO:0001124 ! normal cell size
relationship: has_part FYPO:0001204 ! mistimed mitosis
relationship: has_part FYPO:0001489 ! inviable vegetative cell
created_by: midori
creation_date: 2012-05-11T02:39:40Z

[Term]
id: FYPO:0001054
name: mitotic catastrophe with cut, elongated cell
def: "An inviable phenotype in which a cell undergoes mitotic catastrophe (i.e. enters mitosis prematurely and with defective chromosome segregation), entering mitosis when longer than wild type, and then undergoes septation and subsequently dies." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "cut with mitotic catastrophe, elongated cell" EXACT [PomBase:mah]
synonym: "mitotic catastrophe with cut, elongated cell during vegetative growth" EXACT [PomBase:mah]
synonym: "mitotic catastrophe with cut, long cell" EXACT [PomBase:vw]
is_a: FYPO:0001048 ! mitotic catastrophe with cut
is_a: FYPO:0001051 ! mitotic catastrophe, elongated cell
relationship: has_part FYPO:0000141 ! abnormal mitotic sister chromatid segregation
relationship: has_part FYPO:0000229 ! cut
relationship: has_part FYPO:0001204 ! mistimed mitosis
relationship: has_part FYPO:0001489 ! inviable vegetative cell
relationship: has_part FYPO:0001490 ! elongated inviable vegetative cell
created_by: midori
creation_date: 2012-05-11T02:39:47Z

[Term]
id: FYPO:0001055
name: cut following normal mitotic entry
def: "An inviable phenotype in which a cell enters mitosis normally, but then undergoes septation despite abnormal chromosome segregation, and gives rise to inviable daughter cells." [PomBase:mah]
synonym: "cut following normal entry into mitosis" EXACT [PomBase:mah]
synonym: "cut following normal mitotic entry during vegetative growth" EXACT [PomBase:mah]
synonym: "cut with normal mitotic entry" EXACT [PomBase:mah]
is_a: FYPO:0000229 ! cut
created_by: midori
creation_date: 2012-05-11T02:46:40Z

[Term]
id: FYPO:0001056
name: normal arginine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which L-arginine import into the cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal arginine import during vegetative growth" EXACT [PomBase:mah]
synonym: "normal arginine import into cell" EXACT [PomBase:al]
synonym: "normal arginine uptake" EXACT [GO:0043091]
synonym: "normal L-arginine import" NARROW [PomBase:mah]
is_a: FYPO:0001596 ! normal amino acid import
created_by: midori
creation_date: 2012-05-11T03:49:08Z

[Term]
id: FYPO:0001057
name: abnormal amino acid import
def: "A cellular process phenotype in which the import of one or more amino acids into the cell is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "abnormal amino acid import into cell" EXACT [PomBase:al]
synonym: "abnormal amino acid uptake" EXACT [GO:0043090]
is_a: FYPO:0001720 ! abnormal transport
created_by: midori
creation_date: 2012-05-11T03:54:42Z

[Term]
id: FYPO:0001058
name: decreased amino acid import
def: "A cellular process phenotype in which the import of one or more amino acids into the cell occurs to a lower extent than normal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "decreased amino acid import into cell" EXACT [PomBase:al]
synonym: "decreased amino acid uptake" EXACT [GO:0043090]
synonym: "reduced amino acid import" EXACT [PomBase:mah]
is_a: FYPO:0001057 ! abnormal amino acid import
is_a: FYPO:0001336 ! transport phenotype during vegetative growth
created_by: midori
creation_date: 2012-05-11T03:55:46Z

[Term]
id: FYPO:0001059
name: abnormal glutamate import during vegetative growth
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of glutamate into the cell is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "abnormal glutamate import into cell" EXACT [PomBase:al]
synonym: "abnormal glutamate uptake" EXACT [GO:0051938]
synonym: "abnormal L-glutamate import" NARROW [PomBase:mah]
is_a: FYPO:0001361 ! abnormal amino acid import during vegetative growth
is_a: FYPO:0001646 ! abnormal glutamate import
created_by: midori
creation_date: 2012-05-11T03:57:30Z

[Term]
id: FYPO:0001060
name: decreased glutamate import during vegetative growth
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of glutamate into the cell occurs to a lower extent than normal in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "decreased glutamate import into cell" EXACT [PomBase:al]
synonym: "decreased glutamate uptake" EXACT [GO:0051938]
synonym: "decreased L-glutamate import" NARROW [PomBase:mah]
synonym: "reduced glutamate import" EXACT [PomBase:mah]
is_a: FYPO:0001059 ! abnormal glutamate import during vegetative growth
is_a: FYPO:0001360 ! decreased amino acid import during vegetative growth
is_a: FYPO:0001649 ! decreased glutamate import
created_by: midori
creation_date: 2012-05-11T04:06:25Z

[Term]
id: FYPO:0001061
name: abnormal glutamine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of glutamine into the cell is abnormal." [PomBase:mah]
synonym: "abnormal glutamine import during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal glutamine import into cell" EXACT [PomBase:al]
synonym: "abnormal glutamine uptake" EXACT [GO:0036229]
synonym: "abnormal L-glutamine import" NARROW [PomBase:mah]
is_a: FYPO:0001361 ! abnormal amino acid import during vegetative growth
created_by: midori
creation_date: 2012-05-11T04:08:09Z

[Term]
id: FYPO:0001062
name: decreased glutamine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of glutamine into the cell occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased glutamine import during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased glutamine import into cell" EXACT [PomBase:al]
synonym: "decreased glutamine uptake" EXACT [GO:0036229]
synonym: "decreased L-glutamine import" NARROW [PomBase:mah]
synonym: "reduced glutamine import" EXACT [PomBase:mah]
is_a: FYPO:0001061 ! abnormal glutamine import
is_a: FYPO:0001360 ! decreased amino acid import during vegetative growth
created_by: midori
creation_date: 2012-05-11T04:08:19Z

[Term]
id: FYPO:0001063
name: abnormal glycine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of glycine into the cell is abnormal." [PomBase:mah]
synonym: "abnormal glycine import during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal glycine import into cell" EXACT [PomBase:al]
synonym: "abnormal glycine uptake" EXACT [GO:0036233]
is_a: FYPO:0001361 ! abnormal amino acid import during vegetative growth
created_by: midori
creation_date: 2012-05-11T04:10:09Z

[Term]
id: FYPO:0001064
name: decreased glycine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of glycine into the cell occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased glycine import during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased glycine import into cell" EXACT [PomBase:al]
synonym: "decreased glycine uptake" EXACT [GO:0036233]
synonym: "reduced glycine import" EXACT [PomBase:mah]
is_a: FYPO:0001063 ! abnormal glycine import
is_a: FYPO:0001360 ! decreased amino acid import during vegetative growth
created_by: midori
creation_date: 2012-05-11T04:10:17Z

[Term]
id: FYPO:0001065
name: abnormal threonine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of threonine into the cell is abnormal." [PomBase:mah]
synonym: "abnormal L-threonine import" NARROW [PomBase:mah]
synonym: "abnormal threonine import during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal threonine import into cell" EXACT [PomBase:al]
synonym: "abnormal threonine uptake" EXACT [GO:0036231]
is_a: FYPO:0001361 ! abnormal amino acid import during vegetative growth
created_by: midori
creation_date: 2012-05-11T04:11:34Z

[Term]
id: FYPO:0001066
name: decreased threonine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of threonine into the cell occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased L-threonine import" NARROW [PomBase:mah]
synonym: "decreased threonine import during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased threonine import into cell" EXACT [PomBase:al]
synonym: "decreased threonine uptake" EXACT [GO:0036231]
synonym: "reduced threonine import" EXACT [PomBase:mah]
is_a: FYPO:0001065 ! abnormal threonine import
is_a: FYPO:0001360 ! decreased amino acid import during vegetative growth
created_by: midori
creation_date: 2012-05-11T04:11:43Z

[Term]
id: FYPO:0001067
name: abnormal tyrosine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of tyrosine into the cell is abnormal." [PomBase:mah]
synonym: "abnormal L-tyrosine import" NARROW [PomBase:mah]
synonym: "abnormal tyrosine import during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal tyrosine import into cell" EXACT [PomBase:al]
synonym: "abnormal tyrosine uptake" EXACT [GO:0036232]
is_a: FYPO:0001361 ! abnormal amino acid import during vegetative growth
created_by: midori
creation_date: 2012-05-11T04:14:15Z

[Term]
id: FYPO:0001068
name: decreased tyrosine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of tyrosine into the cell occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased L-tyrosine import" NARROW [PomBase:mah]
synonym: "decreased tyrosine import during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased tyrosine import into cell" EXACT [PomBase:al]
synonym: "decreased tyrosine uptake" EXACT [GO:0036232]
synonym: "reduced tyrosine import" EXACT [PomBase:mah]
is_a: FYPO:0001067 ! abnormal tyrosine import
is_a: FYPO:0001360 ! decreased amino acid import during vegetative growth
created_by: midori
creation_date: 2012-05-11T04:14:20Z

[Term]
id: FYPO:0001069
name: increased duration of mitotic cell cycle phase
def: "A cellular process phenotype in which the duration of one or more mitotic cell cycle phases is longer than normal." [PomBase:mah]
synonym: "increased duration of mitotic cell cycle phase during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000059 ! abnormal mitotic cell cycle progression
is_a: FYPO:0000408 ! increased duration of cell cycle phase
created_by: midori
creation_date: 2012-05-31T14:19:07Z

[Term]
id: FYPO:0001070
name: decreased duration of mitotic cell cycle phase
def: "A cellular process phenotype in which the duration of one or more mitotic cell cycle phases is shorter than normal." [PomBase:mah]
synonym: "decreased duration of mitotic cell cycle phase during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced duration of mitotic cell cycle phase" EXACT [PomBase:mah]
is_a: FYPO:0000059 ! abnormal mitotic cell cycle progression
is_a: FYPO:0000410 ! decreased duration of cell cycle phase
created_by: midori
creation_date: 2012-05-31T14:19:54Z

[Term]
id: FYPO:0001071
name: normal transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transport is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal transport during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001336 ! transport phenotype during vegetative growth
created_by: midori
creation_date: 2012-05-31T15:46:37Z

[Term]
id: FYPO:0001072
name: normal myo-inositol import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which myo-inositol import into the cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal myo-inositol import during vegetative growth" EXACT [PomBase:mah]
synonym: "normal myo-inositol import into cell" EXACT [PomBase:al]
synonym: "normal myo-inositol uptake" EXACT [GO:0043091]
is_a: FYPO:0001071 ! normal transport
created_by: midori
creation_date: 2012-05-31T15:59:13Z

[Term]
id: FYPO:0001073
name: abnormal myo-inositol import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of myo-inositol into the cell is abnormal." [PomBase:mah]
synonym: "abnormal myo-inositol import during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal myo-inositol import into cell" EXACT [PomBase:al]
synonym: "abnormal myo-inositol uptake" EXACT [GO:0043090]
is_a: FYPO:0001336 ! transport phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
is_a: FYPO:0001720 ! abnormal transport
created_by: midori
creation_date: 2012-05-31T16:00:28Z

[Term]
id: FYPO:0001074
name: decreased myo-inositol import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of myo-inositol into the cell occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased myo-inositol import during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased myo-inositol import into cell" EXACT [PomBase:al]
synonym: "decreased myo-inositol uptake" EXACT [GO:0043090]
synonym: "reduced myo-inositol import" EXACT [PomBase:mah]
is_a: FYPO:0001073 ! abnormal myo-inositol import
created_by: midori
creation_date: 2012-05-31T16:00:49Z

[Term]
id: FYPO:0001075
name: normal cell population growth on papulacandin B
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing papulacandin B." [PomBase:mah]
synonym: "normal cell population growth in presence of papulacandin B" EXACT [PomBase:mah]
synonym: "normal cellular response to papulacandin B" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on papulacandin B" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on papulacandin B" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-05-31T16:05:26Z

[Term]
id: FYPO:0001076
name: normal level of substance in cell
def: "A cell phenotype in which the amount of a specific substance measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
is_a: FYPO:0000002 ! cell phenotype
is_a: FYPO:0000257 ! normal phenotype
created_by: midori
creation_date: 2012-05-31T16:27:42Z

[Term]
id: FYPO:0001077
name: normal polysaccharide level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a polysaccharide measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal polysaccharide accumulation" RELATED [PomBase:mah]
synonym: "normal polysaccharide level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-05-31T16:29:26Z

[Term]
id: FYPO:0001078
name: normal beta-glucan level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of beta-D-glucan measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal beta-D-glucan level" EXACT [CHEBI:28793, PomBase:mah]
synonym: "normal beta-glucan accumulation" RELATED [PomBase:mah]
synonym: "normal beta-glucan level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal cellular beta-glucan level" EXACT [PomBase:al]
is_a: FYPO:0001077 ! normal polysaccharide level
created_by: midori
creation_date: 2012-05-31T16:30:57Z

[Term]
id: FYPO:0001079
name: normal galactomannan level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of galactomannan measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular galactomannan level" EXACT [PomBase:al]
synonym: "normal galactomannan accumulation" RELATED [PomBase:mah]
synonym: "normal galactomannan level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001077 ! normal polysaccharide level
created_by: midori
creation_date: 2012-05-31T16:33:06Z

[Term]
id: FYPO:0001080
name: decreased polysaccharide level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a polysaccharide measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular polysaccharide level" EXACT [PomBase:mah]
synonym: "decreased polysaccharide accumulation" RELATED [PomBase:mah]
synonym: "decreased polysaccharide level during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced polysaccharide level" EXACT [PomBase:mah]
is_a: FYPO:0001085 ! altered polysaccharide level
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-05-31T16:33:42Z

[Term]
id: FYPO:0001081
name: decreased cell wall alpha-glucan level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of alpha-D-glucan measured in the cell wall is lower than normal." [PomBase:mah]
synonym: "decreased cell wall alpha-D-glucan level" EXACT [CHEBI:22385, PomBase:mah]
synonym: "decreased cell wall alpha-glucan accumulation" RELATED [PomBase:mah]
synonym: "decreased cell wall alpha-glucan level during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced cell wall alpha-glucan level" EXACT [PomBase:mah]
is_a: FYPO:0000027 ! abnormal cell wall
is_a: FYPO:0001080 ! decreased polysaccharide level
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
created_by: midori
creation_date: 2012-05-31T16:35:00Z

[Term]
id: FYPO:0001082
name: decreased cell wall beta-glucan level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of beta-D-glucan measured in the cell wall is lower than normal." [PomBase:mah]
synonym: "decreased cell wall beta-D-glucan level" EXACT [CHEBI:28793, PomBase:mah]
synonym: "decreased cell wall beta-glucan accumulation" RELATED [PomBase:mah]
synonym: "decreased cell wall beta-glucan level during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced cell wall beta-glucan level" EXACT [PomBase:mah]
is_a: FYPO:0000027 ! abnormal cell wall
is_a: FYPO:0001080 ! decreased polysaccharide level
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
created_by: midori
creation_date: 2012-05-31T16:36:19Z

[Term]
id: FYPO:0001083
name: increased polysaccharide level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a polysaccharide measured in a cell is greater than normal." [PomBase:mah]
synonym: "increased cellular polysaccharide level" EXACT [PomBase:mah]
synonym: "increased polysaccharide accumulation" RELATED [PomBase:mah]
synonym: "increased polysaccharide level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001085 ! altered polysaccharide level
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-05-31T16:37:01Z

[Term]
id: FYPO:0001084
name: increased cell wall alpha-glucan level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of alpha-D-glucan measured in the cell wall is greater than normal." [PomBase:mah]
synonym: "increased cell wall alpha-D-glucan level" EXACT [CHEBI:22385, PomBase:mah]
synonym: "increased cell wall alpha-glucan accumulation" RELATED [PomBase:mah]
synonym: "increased cell wall alpha-glucan level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000027 ! abnormal cell wall
is_a: FYPO:0001083 ! increased polysaccharide level
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
created_by: midori
creation_date: 2012-05-31T16:37:12Z

[Term]
id: FYPO:0001085
name: altered polysaccharide level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a polysaccharide measured in a cell differs from normal." [PomBase:mah]
synonym: "abnormal polysaccharide level" EXACT [PomBase:mah]
synonym: "altered cellular polysaccharide level" EXACT [PomBase:mah]
synonym: "altered polysaccharide level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001323 ! altered level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-05-31T16:39:05Z

[Term]
id: FYPO:0001086
name: normal glucosyltransferase activity
def: "A molecular function phenotype in which the observed rate of a glucosyltransferase activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2012-05-31T16:41:20Z

[Term]
id: FYPO:0001087
name: abnormal glucosyltransferase activity
def: "A molecular function phenotype in which the observed rate of a glucosyltransferase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-05-31T16:41:54Z

[Term]
id: FYPO:0001088
name: decreased glucosyltransferase activity
def: "A molecular function phenotype in which the observed rate of a glucosyltransferase activity is decreased." [PomBase:mah]
synonym: "reduced glucosyltransferase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0001087 ! abnormal glucosyltransferase activity
created_by: midori
creation_date: 2012-05-31T16:42:14Z

[Term]
id: FYPO:0001089
name: increased glucosyltransferase activity
def: "A molecular function phenotype in which the observed rate of a glucosyltransferase activity is increased." [PomBase:mah]
is_a: FYPO:0000662 ! increased catalytic activity
is_a: FYPO:0001087 ! abnormal glucosyltransferase activity
created_by: midori
creation_date: 2012-05-31T16:42:35Z

[Term]
id: FYPO:0001090
name: resistance to heat shock during vegetative growth
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show decreased sensitivity to heat shock. Heat shock is a form of heat stress in which cells are briefly exposed to a very high temperature." [PomBase:mah]
synonym: "resistant to heat shock during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000850 ! resistance to stress during vegetative growth
is_a: FYPO:0002045 ! resistance to heat shock
created_by: midori
creation_date: 2012-06-01T13:48:51Z

[Term]
id: FYPO:0001091
name: normal cellular response to heat shock
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to heat shock is normal (i.e. indistinguishable from wild type). Heat shock is a form of heat stress in which cells are briefly exposed to a very high temperature." [PomBase:mah]
synonym: "normal cellular response to heat shock during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000968 ! normal cellular response to stress
created_by: midori
creation_date: 2012-06-01T13:59:10Z

[Term]
id: FYPO:0001092
name: binding phenotype
def: "A phenotype that affects the binding of a gene product to another substance." [PomBase:mah]
synonym: "fission yeast binding phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000652 ! molecular function phenotype
created_by: midori
creation_date: 2012-06-01T14:07:32Z

[Term]
id: FYPO:0001093
name: abolished chromatin binding
def: "A molecular function phenotype in which chromatin binding by a mutated gene product does not occur. The gene product may normally bind DNA, protein, or both in chromatin." [PomBase:mah]
synonym: "abolished chromatin association" EXACT [PomBase:vw]
synonym: "chromatin binding abolished" EXACT [PomBase:mah]
is_a: FYPO:0001092 ! binding phenotype
created_by: midori
creation_date: 2012-06-01T14:08:25Z

[Term]
id: FYPO:0001094
name: normal DNA replication origin binding
def: "A molecular function phenotype in which occurrence of DNA binding at a replication origin by a mutated gene product is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal origin binding" EXACT [PomBase:mah]
is_a: FYPO:0000655 ! normal DNA binding
created_by: midori
creation_date: 2012-06-01T14:23:10Z

[Term]
id: FYPO:0001095
name: abolished DNA replication origin binding
def: "A molecular function phenotype in which DNA binding at a replication origin by a gene product does not occur, when the gene product or the bound DNA sequence is mutated." [PomBase:mah]
synonym: "abolished origin binding" EXACT [PomBase:mah]
synonym: "DNA replication origin binding abolished" EXACT [PomBase:mah]
is_a: FYPO:0000659 ! abolished DNA binding
created_by: midori
creation_date: 2012-06-01T14:24:32Z

[Term]
id: FYPO:0001096
name: normal RNA level during nitrogen starvation
def: "A cell phenotype in which the amount of RNA measured in a cell during nitrogen starvation is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "normal cellular RNA level during nitrogen starvation" EXACT [PomBase:mah]
synonym: "normal mRNA level during nitrogen starvation" NARROW [PomBase:mah]
synonym: "normal RNA accumulation during nitrogen starvation" RELATED [PomBase:mah]
is_a: FYPO:0000840 ! normal RNA level
created_by: midori
creation_date: 2012-06-01T14:32:55Z

[Term]
id: FYPO:0001097
name: sensitive to amitrole
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to amitrole. Cells stop growing (and may die) at a concentration of amitrole that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to amitrole" EXACT [PomBase:mah]
synonym: "sensitive to 3-amino-1,2,4-triazole" EXACT [CHEBI:40036, PomBase:al]
synonym: "sensitive to amitrole during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-06-01T14:35:59Z

[Term]
id: FYPO:0001098
name: sensitive to 4-nitroquinoline N-oxide
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to 4-nitroquinoline N-oxide. Cells stop growing (and may die) at a concentration of 4-nitroquinoline N-oxide that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to 4-nitroquinoline N-oxide" EXACT [PomBase:mah]
synonym: "sensitive to 4-nitroquinoline N-oxide during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-06-01T14:37:39Z

[Term]
id: FYPO:0001099
name: normal cell population growth on CCCP
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing carbonyl cyanide m-chlorophenyl hydrazone (CCCP)." [PomBase:mah]
synonym: "normal cell population growth in presence of CCCP" EXACT [PomBase:mah]
synonym: "normal cell population growth on carbonyl cyanide m-chlorophenyl hydrazone" EXACT [CHEBI:3259]
synonym: "normal cellular response to CCCP" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on CCCP" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on CCCP" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-06-01T14:38:51Z

[Term]
id: FYPO:0001100
name: normal cell population growth on Gentian violet
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing Gentian violet (also known as crystal violet)." [PomBase:mah]
synonym: "normal cell population growth in presence of Gentian violet" EXACT [PomBase:mah]
synonym: "normal cell population growth on crystal violet" EXACT [PomBase:mah]
synonym: "normal cell population growth on {4-[Bis-(4-dimethylamino-phenyl)-methylene]-cyclohexa-2,5-dienylidene}-dimethyl-ammonium chloride" EXACT [CHEBI:198346]
synonym: "normal vegetative cell population growth on Gentian violet" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-06-01T14:39:48Z

[Term]
id: FYPO:0001101
name: decreased protein level during cellular response to hydrogen peroxide
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to hydrogen peroxide is lower than normal. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "decreased protein accumulation during cellular response to hydrogen peroxide" RELATED [PomBase:mah]
synonym: "decreased protein level during cellular response to hydrogen peroxide during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced protein level during cellular response to hydrogen peroxide" EXACT [PomBase:mah]
is_a: FYPO:0001324 ! decreased protein level during vegetative growth
is_a: FYPO:0001548 ! altered protein level during cellular response to hydrogen peroxide
created_by: midori
creation_date: 2012-06-01T14:47:37Z

[Term]
id: FYPO:0001102
name: increased protein level during cellular response to hydrogen peroxide
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to hydrogen peroxide is higher than normal. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "increased protein accumulation during cellular response to hydrogen peroxide" RELATED [PomBase:mah]
synonym: "increased protein level during cellular response to hydrogen peroxide during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001327 ! increased protein level during vegetative growth
is_a: FYPO:0001548 ! altered protein level during cellular response to hydrogen peroxide
created_by: midori
creation_date: 2012-06-01T14:48:16Z

[Term]
id: FYPO:0001103
name: resistance to hydrogen peroxide
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of hydrogen peroxide than normal." [PomBase:mah]
synonym: "resistance to H2O2" EXACT [CHEBI:16240, PomBase:mah]
synonym: "resistance to hydrogen peroxide during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to hydrogen peroxide" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-06-01T14:49:59Z

[Term]
id: FYPO:0001104
name: abnormal catalase activity
def: "A molecular function phenotype in which the observed rate of catalase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000689 ! abnormal oxidoreductase activity
created_by: midori
creation_date: 2012-06-01T15:00:27Z

[Term]
id: FYPO:0001105
name: abolished catalase activity
def: "A molecular function phenotype in which catalase activity is absent." [PomBase:mah]
synonym: "catalase activity abolished" EXACT [PomBase:mah]
is_a: FYPO:0000664 ! abolished catalytic activity
is_a: FYPO:0001104 ! abnormal catalase activity
created_by: midori
creation_date: 2012-06-01T15:00:35Z

[Term]
id: FYPO:0001106
name: abnormal glutathione-disulfide reductase activity
def: "A molecular function phenotype in which the observed rate of glutathione-disulfide reductase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000689 ! abnormal oxidoreductase activity
created_by: midori
creation_date: 2012-06-01T15:14:45Z

[Term]
id: FYPO:0001107
name: decreased glutathione-disulfide reductase activity
def: "A molecular function phenotype in which the observed rate of glutathione-disulfide reductase activity is decreased." [PomBase:mah]
synonym: "reduced glutathione-disulfide reductase activity" EXACT [PomBase:mah]
is_a: FYPO:0000690 ! decreased oxidoreductase activity
is_a: FYPO:0001106 ! abnormal glutathione-disulfide reductase activity
created_by: midori
creation_date: 2012-06-01T15:14:58Z

[Term]
id: FYPO:0001108
name: increased glutathione-disulfide reductase activity
def: "A molecular function phenotype in which the observed rate of glutathione-disulfide reductase activity is increased." [PomBase:mah]
is_a: FYPO:0000662 ! increased catalytic activity
is_a: FYPO:0001106 ! abnormal glutathione-disulfide reductase activity
created_by: midori
creation_date: 2012-06-01T15:15:04Z

[Term]
id: FYPO:0001109
name: resistance to menadione
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of menadione than normal." [PomBase:mah]
synonym: "resistance to menadione during vegetative growth" EXACT [PomBase:mah]
synonym: "resistance to vitamin K3" RELATED [PomBase:al]
synonym: "resistant to menadione" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-06-01T15:18:55Z

[Term]
id: FYPO:0001110
name: inviable after spore germination, multiple cell divisions, normal morphology
def: "A phenotype in which a spore germinates to produce a cell of normal morphology that undergoes two or more rounds of cell division, and then dies." [PomBase:al, PomBase:mah]
synonym: "essential; germinating spore, multiple cell divisions, normal morphology" RELATED [PomBase:mah]
synonym: "inviable following spore germination, multiple cell divisions, normal morphology" EXACT [PomBase:mah]
synonym: "inviable germinating spore, multiple cell divisions, normal morphology" RELATED [PomBase:mah]
synonym: "inviable germinating spore, multiple cell divisions, normal morphology during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000316 ! inviable after spore germination
relationship: has_output FYPO:0000299 ! microcolony formation
created_by: midori
creation_date: 2012-06-01T15:21:23Z

[Term]
id: FYPO:0001111
name: increased cellular glutathione disulfide level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of glutathione disulfide (GSSG) measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular glutathione disulfide level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased cellular GSSG level" EXACT [CHEBI:17858, PomBase:al]
synonym: "increased cellular oxidised glutathione level" EXACT [CHEBI:17858, PomBase:al]
synonym: "increased glutathione disulfide accumulation" RELATED [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-06-01T15:26:21Z

[Term]
id: FYPO:0001112
name: advanced cell cycle arrest in response to nitrogen starvation
def: "A cellular process phenotype in which the occurrence of cell cycle arrest in response to nitrogen starvation takes place earlier than normal." [PomBase:mah]
is_a: FYPO:0000710 ! abnormal cell cycle arrest in response to nitrogen starvation
created_by: midori
creation_date: 2012-06-01T15:29:57Z

[Term]
id: FYPO:0001113
name: normal cellular response to pheromone
def: "A cellular response phenotype in which the cellular response to a pheromone is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0000953 ! normal cellular response to chemical stimulus
created_by: midori
creation_date: 2012-06-01T15:37:34Z

[Term]
id: FYPO:0001114
name: normal cellular response to M-factor
def: "A cellular response phenotype in which the cellular response to M-factor is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0001113 ! normal cellular response to pheromone
created_by: midori
creation_date: 2012-06-01T15:39:05Z

[Term]
id: FYPO:0001115
name: normal cellular response to P-factor
def: "A cellular response phenotype in which the cellular response to P-factor is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0001113 ! normal cellular response to pheromone
created_by: midori
creation_date: 2012-06-01T15:39:33Z

[Term]
id: FYPO:0001116
name: decreased RNA level during cellular response to hydrogen peroxide
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to hydrogen peroxide is lower than normal. Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "decreased mRNA level during cellular response to hydrogen peroxide" NARROW [PomBase:mah]
synonym: "decreased RNA accumulation during cellular response to hydrogen peroxide" RELATED [PomBase:mah]
synonym: "decreased RNA level during cellular response to hydrogen peroxide during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced RNA level during cellular response to hydrogen peroxide" EXACT [PomBase:mah]
is_a: FYPO:0001280 ! decreased RNA level during cellular response to oxidative stress
created_by: midori
creation_date: 2012-06-07T11:25:57Z

[Term]
id: FYPO:0001117
name: decreased RNA level during vegetative growth
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell is lower than normal. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "decreased cellular mRNA level during vegetative growth" NARROW [PomBase:vw]
synonym: "decreased cellular RNA level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased RNA accumulation during vegetative growth" RELATED [PomBase:mah]
synonym: "reduced RNA level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000826 ! decreased RNA level
is_a: FYPO:0001326 ! altered RNA level during vegetative growth
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-06-07T11:31:36Z

[Term]
id: FYPO:0001118
name: abnormal vegetative cell morphology
def: "A cell phenotype in which cell morphology is altered in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "abnormal cell morphology during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000005 ! abnormal cell morphology
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2012-06-07T11:45:38Z

[Term]
id: FYPO:0001119
name: bottle-shaped cell during vegetative growth
def: "A cell morphology phenotype in which the cell takes on a bottle shape, i.e. tapers at one end to a diameter smaller than the other, in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "cell morphology, bottle/skittle during vegetative growth" EXACT [PomBase:mah]
synonym: "skittle-shaped cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000014 ! bottle-shaped cell
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
created_by: midori
creation_date: 2012-06-07T11:47:07Z

[Term]
id: FYPO:0001120
name: pear-shaped cell during vegetative growth
def: "A cell morphology phenotype in which a cell is shaped in the form of a pear in the vegetative growth phase of the life cycle." [PomBase:mah]
comment: Discussing what this means; may rename.
synonym: "cell morphology, pear shaped during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000020 ! pear-shaped cell
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
created_by: midori
creation_date: 2012-06-07T11:47:18Z

[Term]
id: FYPO:0001121
name: vegetative cell, abnormal cell shape, normal cell size
def: "A cell phenotype in which cell shape is altered, but cell size remains normal, in the vegetative growth phase of the life cycle." [PomBase:mah, PomBase:vw]
synonym: "abnormal cell shape, normal cell size during vegetative growth" EXACT [PomBase:mah]
synonym: "lumpy" RELATED [PomBase:vw]
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
relationship: has_part FYPO:0001124 ! normal cell size
relationship: has_part FYPO:0001126 ! abnormal cell shape
created_by: midori
creation_date: 2012-06-07T11:56:50Z

[Term]
id: FYPO:0001122
name: elongated vegetative cell
def: "A cell phenotype in which a cell is elongated in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "long vegetative cell" EXACT [PomBase:vw]
is_a: FYPO:0000017 ! elongated cell
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
created_by: midori
creation_date: 2012-06-07T13:10:57Z

[Term]
id: FYPO:0001123
name: elongated spore
def: "A cell phenotype in which a spore is longer than normal." [PomBase:mah]
synonym: "long spores" EXACT [PomBase:vw]
is_a: FYPO:0000017 ! elongated cell
is_a: FYPO:0000348 ! abnormal spore morphology
created_by: midori
creation_date: 2012-06-07T13:11:48Z

[Term]
id: FYPO:0001124
name: normal cell size
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has a normal volume and dimensions." [PomBase:mah]
synonym: "normal cell size during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001315 ! normal cell morphology during vegetative growth
created_by: midori
creation_date: 2012-06-07T15:28:36Z

[Term]
id: FYPO:0001125
name: normal cell shape
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has a normal shape." [PomBase:mah]
synonym: "normal cell shape during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001315 ! normal cell morphology during vegetative growth
created_by: midori
creation_date: 2012-06-07T15:28:36Z

[Term]
id: FYPO:0001126
name: abnormal cell shape
def: "A cell morphology phenotype in which a cell has an abnormal shape." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
is_a: FYPO:0000005 ! abnormal cell morphology
created_by: midori
creation_date: 2012-06-07T15:28:36Z

[Term]
id: FYPO:0001127
name: abnormal cell size
def: "A cell morphology phenotype in which a cell has a volume or dimensions that differ from normal." [PomBase:mah]
is_a: FYPO:0000005 ! abnormal cell morphology
created_by: midori
creation_date: 2012-06-07T16:00:41Z

[Term]
id: FYPO:0001128
name: decreased septation index
def: "A cell population phenotype in which the septation index is lower than normal. The septation index is the proportion of the population undergoing septation at any given time, and is usually around 10% (varying between 7-15%) for wild type." [PomBase:mah]
synonym: "decreased septation" RELATED [PomBase:mah]
synonym: "reduced septation index" EXACT [PomBase:mah]
is_a: FYPO:0000003 ! cell population phenotype
is_a: FYPO:0001985 ! abnormal phenotype
relationship: includes_cells_with_phenotype FYPO:0000567 ! decreased duration of septation
created_by: midori
creation_date: 2012-06-08T11:45:02Z

[Term]
id: FYPO:0001129
name: abnormal protein localization to nucleus
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is abnormal." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found associated with chromatin and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to nucleus" EXACT [GO:0034504, PomBase:mah]
synonym: "abnormal protein localization to nucleus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
created_by: midori
creation_date: 2012-06-08T12:02:23Z

[Term]
id: FYPO:0001130
name: increased protein localization to nucleus
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is increased." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "increased protein localisation to nucleus" EXACT [GO:0034504, PomBase:mah]
synonym: "increased protein localization to nucleus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001129 ! abnormal protein localization to nucleus
created_by: midori
creation_date: 2012-06-08T12:04:38Z

[Term]
id: FYPO:0001131
name: abnormal protein localization to heterochromatin
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to heterochromatin is abnormal." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found associated with chromatin and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein heterochromatin to chromatin" EXACT [PomBase:mah]
synonym: "abnormal protein localisation to heterochromatin" EXACT [PomBase:mah]
synonym: "abnormal protein localization to heterochromatin during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000452 ! abnormal protein localization to chromatin during vegetative growth
created_by: midori
creation_date: 2012-06-08T15:14:15Z

[Term]
id: FYPO:0001132
name: abolished protein localization to heterochromatin
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to heterochromatin is abolished." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abolished protein localisation to heterochromatin" EXACT [PomBase:mah]
synonym: "abolished protein localization to heterochromatin during vegetative growth" EXACT [PomBase:mah]
synonym: "protein localization to heterochromatin abolished" EXACT [PomBase:mah]
is_a: FYPO:0001131 ! abnormal protein localization to heterochromatin
is_a: FYPO:0001508 ! abolished protein localization to chromatin during vegetative growth
created_by: midori
creation_date: 2012-06-08T15:15:02Z

[Term]
id: FYPO:0001133
name: normal DNA replication
def: "A cellular process phenotype in which DNA replication is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal DNA replication during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000859 ! normal metabolic process
is_a: FYPO:0001346 ! DNA metabolism phenotype during vegetative growth
created_by: midori
creation_date: 2012-06-08T15:41:39Z

[Term]
id: FYPO:0001134
name: normal 18S rRNA level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 18S ribosomal RNA measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "normal 18S rRNA accumulation" RELATED [PomBase:mah]
synonym: "normal 18S rRNA level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001317 ! normal RNA level during vegetative growth
created_by: midori
creation_date: 2012-06-08T16:38:01Z

[Term]
id: FYPO:0001135
name: increased 35S rRNA precursor level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of the 35S rRNA primary transcript measured in a cell is higher than normal." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "increased 35S rRNA precursor accumulation" RELATED [PomBase:mah]
synonym: "increased 35S rRNA precursor level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased 35S rRNA primary transcript level" EXACT [PomBase:mah, SO:0000325]
is_a: FYPO:0000825 ! increased RNA level during vegetative growth
created_by: midori
creation_date: 2012-06-08T16:40:54Z

[Term]
id: FYPO:0001136
name: increased 27S rRNA precursor level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any 27S rRNA precursor measured in a cell is higher than normal." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "increased 27S rRNA precursor accumulation" RELATED [PomBase:mah]
synonym: "increased 27S rRNA precursor level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000825 ! increased RNA level during vegetative growth
created_by: midori
creation_date: 2012-06-08T16:44:25Z

[Term]
id: FYPO:0001137
name: decreased 25S rRNA level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of the mature 25S rRNA measured in a cell is lower than normal." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "decreased 25S rRNA accumulation" RELATED [PomBase:mah]
synonym: "decreased 25S rRNA level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased mature 25S rRNA transcript" EXACT [PomBase:vw]
synonym: "reduced 25S rRNA level" EXACT [PomBase:mah]
is_a: FYPO:0001117 ! decreased RNA level during vegetative growth
created_by: midori
creation_date: 2012-06-08T16:45:47Z

[Term]
id: FYPO:0001138
name: decreased 5.8S rRNA level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of the mature 5.8S rRNA measured in a cell is lower than normal." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "decreased 5.8S rRNA accumulation" RELATED [PomBase:mah]
synonym: "decreased 5.8S rRNA level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased mature 5.8S rRNA transcript" EXACT [PomBase:vw]
synonym: "reduced 5.8S rRNA level" EXACT [PomBase:mah]
is_a: FYPO:0001117 ! decreased RNA level during vegetative growth
created_by: midori
creation_date: 2012-06-08T16:47:19Z

[Term]
id: FYPO:0001139
name: abnormal leucine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of leucine into the cell is abnormal." [PomBase:mah]
synonym: "abnormal leucine import during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal leucine import into cell" EXACT [PomBase:al]
synonym: "abnormal leucine uptake" EXACT [GO:0036233]
is_a: FYPO:0001361 ! abnormal amino acid import during vegetative growth
created_by: midori
creation_date: 2012-06-11T14:24:42Z

[Term]
id: FYPO:0001140
name: decreased leucine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of leucine into the cell occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased leucine import during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased leucine import into cell" EXACT [PomBase:al]
synonym: "decreased leucine uptake" EXACT [GO:0036233]
synonym: "reduced leucine import" EXACT [PomBase:mah]
is_a: FYPO:0001139 ! abnormal leucine import
is_a: FYPO:0001360 ! decreased amino acid import during vegetative growth
created_by: midori
creation_date: 2012-06-11T14:26:26Z

[Term]
id: FYPO:0001141
name: abolished transcriptional response to pheromone
def: "A conjugation phenotype in which regulation of transcription in response to mating pheromone is abolished." [PomBase:mah]
synonym: "abolished regulation of transcription from RNA polymerase II promoter by pheromones" EXACT [GO:0046019, PomBase:mah]
synonym: "transcriptional response to pheromone abolished" EXACT [PomBase:mah]
is_a: FYPO:0000984 ! abnormal transcriptional response to pheromone
created_by: midori
creation_date: 2012-06-11T14:48:00Z

[Term]
id: FYPO:0001142
name: normal Man8GlcNAc level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of Man8GlcNAc2 measured in a cell is normal (i.e. indistinguishable from wild type). Man8GlcNAc2 is any N-glycan that consists of a branched ten-membered mannooligosaccharide containing eight D-mannosyl residues and two N-acetylglucosamine residues." [CHEBI:64048, CHEBI:64052, PomBase:mah]
comment: Note that these terms treat Man(n)GlcNAc and Man(n)GlcNAc2 as equivalent. The reason is that the GlcNAc2 form is attached to N-linked glycoproteins, but the GlcNAc form is what is usually detected in experiments, following cleavage by endoglycosidase H. For the purposes of observing and interpreting phenotypes, the difference is not significant.
synonym: "normal cellular Man8GlcNAc level" EXACT [PomBase:al]
synonym: "normal Man8GlcNAc accumulation" RELATED [PomBase:mah]
synonym: "normal Man8GlcNAc level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal Man8GlcNAc2 level" EXACT [PomBase:mah]
is_a: FYPO:0001077 ! normal polysaccharide level
created_by: midori
creation_date: 2012-06-14T15:52:46Z

[Term]
id: FYPO:0001143
name: normal Man9GlcNAc level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of Man9GlcNAc2 measured in a cell is normal (i.e. indistinguishable from wild type). Man9GlcNAc2 is any N-glycan that consists of a branched undecasaccharide consisting of nine D-mannosyl residues and two N-acetylglucosamine residues." [CHEBI:59579, PomBase:mah]
comment: Note that these terms treat Man(n)GlcNAc and Man(n)GlcNAc2 as equivalent. The reason is that the GlcNAc2 form is attached to N-linked glycoproteins, but the GlcNAc form is what is usually detected in experiments, following cleavage by endoglycosidase H. For the purposes of observing and interpreting phenotypes, the difference is not significant.
synonym: "normal cellular Man9GlcNAc level" EXACT [PomBase:al]
synonym: "normal Man9GlcNAc accumulation" RELATED [PomBase:mah]
synonym: "normal Man9GlcNAc level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal Man9GlcNAc2 level" EXACT [PomBase:mah]
is_a: FYPO:0001077 ! normal polysaccharide level
created_by: midori
creation_date: 2012-06-14T15:55:35Z

[Term]
id: FYPO:0001144
name: decreased Man8GlcNAc level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of Man8GlcNAc2 measured in a cell is lower than normal. Man8GlcNAc2 is any N-glycan that consists of a branched ten-membered mannooligosaccharide containing eight D-mannosyl residues and two N-acetylglucosamine residues." [CHEBI:64048, CHEBI:64052, PomBase:mah]
comment: Note that these terms treat Man(n)GlcNAc and Man(n)GlcNAc2 as equivalent. The reason is that the GlcNAc2 form is attached to N-linked glycoproteins, but the GlcNAc form is what is usually detected in experiments, following cleavage by endoglycosidase H. For the purposes of observing and interpreting phenotypes, the difference is not significant.
synonym: "decreased cellular Man8GlcNAc level" EXACT [PomBase:al]
synonym: "decreased Man8GlcNAc accumulation" RELATED [PomBase:mah]
synonym: "decreased Man8GlcNAc level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased Man8GlcNAc2 level" EXACT [PomBase:mah]
synonym: "reduced Man8GlcNAc level" EXACT [PomBase:mah]
is_a: FYPO:0001080 ! decreased polysaccharide level
created_by: midori
creation_date: 2012-06-14T15:59:43Z

[Term]
id: FYPO:0001145
name: increased Man9GlcNAc level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of Man9GlcNAc2 measured in a cell is higher than normal. Man9GlcNAc2 is any N-glycan that consists of a branched undecasaccharide consisting of nine D-mannosyl residues and two N-acetylglucosamine residues." [CHEBI:59579, PomBase:mah]
comment: Note that these terms treat Man(n)GlcNAc and Man(n)GlcNAc2 as equivalent. The reason is that the GlcNAc2 form is attached to N-linked glycoproteins, but the GlcNAc form is what is usually detected in experiments, following cleavage by endoglycosidase H. For the purposes of observing and interpreting phenotypes, the difference is not significant.
synonym: "increased cellular Man9GlcNAc level" EXACT [PomBase:al]
synonym: "increased Man9GlcNAc accumulation" RELATED [PomBase:mah]
synonym: "increased Man9GlcNAc level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased Man9GlcNAc2 level" EXACT [PomBase:mah]
is_a: FYPO:0001083 ! increased polysaccharide level
created_by: midori
creation_date: 2012-06-14T16:00:30Z

[Term]
id: FYPO:0001146
name: decreased misfolded glycoprotein degradation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of misfolded glycoprotein degradation is decreased." [PomBase:mah]
synonym: "decreased misfolded glycoprotein catabolic process" EXACT [GO:0030163, PomBase:mah]
synonym: "decreased misfolded glycoprotein catabolism" EXACT [PomBase:mah]
synonym: "decreased misfolded glycoprotein degradation during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced protein degradation" EXACT [PomBase:mah]
is_a: FYPO:0000846 ! decreased protein degradation
created_by: midori
creation_date: 2012-06-14T16:04:32Z

[Term]
id: FYPO:0001147
name: normal mating efficiency
def: "A biological process phenotype in which the observed mating efficiency is normal (i.e. the same as in wild-type cells)." [PomBase:al, PomBase:mah]
comment: Note that mating efficiency is often measured by counting zygotes plus asci, sometimes also including spores, so a change in measured mating efficiency may reflect a change in conjugation frequency (see FYPO:0000031 and its descendants), a change in sporulation (see FYPO:0000121 and its descendants), or both. For this reason, this term is not a child of 'mating phenotype' (FYPO:0000031).
is_a: FYPO:0000257 ! normal phenotype
is_a: FYPO:0000300 ! biological process phenotype
created_by: midori
creation_date: 2012-06-14T16:21:22Z

[Term]
id: FYPO:0001148
name: normal cell population growth on amiloride
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing amiloride." [PomBase:mah]
synonym: "normal cell population growth in presence of amiloride" EXACT [PomBase:mah]
synonym: "normal cellular response to amiloride" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on amiloride" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on amiloride" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-06-14T16:30:50Z

[Term]
id: FYPO:0001149
name: normal cell population growth on methylamine
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing methylamine." [PomBase:mah]
synonym: "normal cell population growth in presence of methylamine" EXACT [PomBase:mah]
synonym: "normal cellular response to methylamine" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on methylamine" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on methylamine" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-06-14T16:33:06Z

[Term]
id: FYPO:0001150
name: sensitive to methylamine
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to methylamine. Cells stop growing (and may die) at a concentration of methylamine that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to methylamine" EXACT [PomBase:mah]
synonym: "sensitive to methylamine during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-06-14T16:34:29Z

[Term]
id: FYPO:0001151
name: cell cycle arrest in mitotic G2 phase during starvation
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested in G2 phase when the cell is subject to starvation for one or more nutrients." [PMID:19366728, PomBase:mah]
synonym: "mitotic G2 phase arrest during starvation" EXACT [PomBase:mah]
is_a: FYPO:0000446 ! cell cycle arrest in mitotic G2 phase
created_by: midori
creation_date: 2012-06-14T16:45:50Z

[Term]
id: FYPO:0001152
name: decreased RNA level during nitrogen starvation
def: "A cell phenotype in which the amount of RNA measured in a cell when the cell is subject to nitrogen starvation is lower than normal. Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "decreased RNA accumulation during nitrogen starvation" RELATED [PomBase:mah]
synonym: "reduced RNA level during nitrogen starvation" EXACT [PomBase:mah]
is_a: FYPO:0000826 ! decreased RNA level
created_by: midori
creation_date: 2012-06-14T16:52:51Z

[Term]
id: FYPO:0001153
name: normal cellular methylamine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of methylamine measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular methylamine accumulation" RELATED [PomBase:mah]
synonym: "normal cellular methylamine level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-06-14T16:54:23Z

[Term]
id: FYPO:0001154
name: increased cellular methylamine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of methylamine measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular methylamine level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased methylamine accumulation" RELATED [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-06-14T16:55:28Z

[Term]
id: FYPO:0001155
name: altered effect on growth medium
def: "A phenotype in which the changes that take place in growth medium, due to metabolism, secretion, etc. by a cell or population of cells, differs from normal." [PomBase:mah]
synonym: "abnormal effect on growth medium" EXACT [PomBase:mah]
is_a: FYPO:0001985 ! abnormal phenotype
created_by: midori
creation_date: 2012-06-15T12:57:29Z

[Term]
id: FYPO:0001156
name: decreased pH of growth medium
def: "A phenotype in which cells cause the pH of their growth medium to decrease by a greater amount than normal." [PomBase:mah]
synonym: "decreased pH level of growth medium" EXACT [PomBase:al]
synonym: "increased growth medium acidification" EXACT [PMID:10467002, PomBase:mah]
is_a: FYPO:0001155 ! altered effect on growth medium
created_by: midori
creation_date: 2012-06-15T13:37:06Z

[Term]
id: FYPO:0001157
name: increased cell population growth rate at high pH
def: "A cell population phenotype in which a cell population in the vegetative growth phase of the life cycle grows at a faster rate than normal in a medium with higher than standard pH. Standard S. pombe growth media are approximately pH 5.6." [PMID:10467002, PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "enhanced growth at high pH" RELATED [PomBase:mah]
synonym: "fast cell population growth at high pH" EXACT [PomBase:mah]
synonym: "increased cell population growth rate at high pH during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000636 ! increased cell population growth rate
created_by: midori
creation_date: 2012-06-15T13:43:25Z

[Term]
id: FYPO:0001158
name: normal cellular pH
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the measured intracellular pH is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular pH during vegetative growth" EXACT [PomBase:mah]
synonym: "normal cellular pH level" EXACT [PomBase:al]
is_a: FYPO:0001312 ! normal vegetative phenotype
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2012-06-15T13:47:22Z

[Term]
id: FYPO:0001159
name: increased cellular pH
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the measured intracellular pH is higher than normal." [PomBase:mah]
synonym: "increased cellular pH during vegetative growth" EXACT [PomBase:mah]
synonym: "increased cellular pH level" EXACT [PomBase:al]
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2012-06-15T13:47:43Z

[Term]
id: FYPO:0001160
name: cell cycle arrest in mitotic G2 phase during stationary phase
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested in G2 phase when the population in which the cell is found is in stationary phase." [PMID:19366728, PomBase:mah]
synonym: "mitotic G2 phase arrest during stationary phase" EXACT [PomBase:mah]
is_a: FYPO:0000446 ! cell cycle arrest in mitotic G2 phase
is_a: FYPO:0000563 ! abnormal mitotic G2 phase progression
is_a: FYPO:0001028 ! abnormal cell cycle arrest in mitotic interphase
created_by: midori
creation_date: 2012-06-15T14:04:54Z

[Term]
id: FYPO:0001161
name: decreased aerobic cell population growth on glucose carbon source
def: "A vegetative cell population growth phenotype in which cell growth is decreased relative to normal under aerobic conditions and in a medium containing glucose as the carbon source." [PomBase:mah]
synonym: "decreased aerobic vegetative cell growth on glucose carbon source" EXACT [PomBase:mah]
synonym: "decreased hypoxic growth on glucose carbon source" BROAD [PomBase:mah]
synonym: "reduced aerobic cell growth on glucose carbon source" EXACT [PomBase:mah]
synonym: "slow aerobic cell growth on glucose carbon source" NARROW [PomBase:mah]
is_a: FYPO:0001407 ! decreased cell population growth on glucose carbon source
created_by: midori
creation_date: 2012-06-15T14:18:50Z

[Term]
id: FYPO:0001162
name: decreased cell population growth on raffinose carbon source
def: "A vegetative cell population growth phenotype in which cell growth is decreased relative to normal under aerobic conditions and in a medium containing raffinose as the carbon source." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "decreased aerobic cell growth on raffinose carbon source" NARROW [PomBase:mah]
synonym: "decreased growth on raffinose carbon source" BROAD [PomBase:mah]
synonym: "decreased vegetative cell growth on raffinose carbon source" EXACT [PomBase:mah]
synonym: "reduced cell growth on raffinose carbon source" EXACT [PomBase:mah]
synonym: "slow aerobic cell growth on raffinose carbon source" NARROW [PomBase:mah]
is_a: FYPO:0001355 ! decreased vegetative cell population growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-06-15T14:21:23Z

[Term]
id: FYPO:0001163
name: decreased hypoxic cell population growth on glucose carbon source
def: "A vegetative cell population growth phenotype in which cell growth is decreased relative to normal under semi-anaerobic conditions and in a medium containing glucose as the carbon source." [PomBase:mah]
synonym: "decreased hypoxic growth on glucose carbon source" BROAD [PomBase:mah]
synonym: "decreased hypoxic vegetative cell growth on glucose carbon source" EXACT [PomBase:mah]
synonym: "decreased semi-anaerobic cell growth on glucose carbon source" EXACT [PomBase:al]
synonym: "sensitive to hypoxia" RELATED [PomBase:community_curation]
synonym: "slow semi-anaerobic cell growth on glucose carbon source" NARROW [PomBase:mah]
is_a: FYPO:0001407 ! decreased cell population growth on glucose carbon source
created_by: midori
creation_date: 2012-06-15T14:22:11Z

[Term]
id: FYPO:0001164
name: normal cell population growth on glucose carbon source
def: "A vegetative cell population growth phenotype in which cells grow normally in a medium containing glucose as the carbon source." [PomBase:mah]
synonym: "normal growth on glucose carbon source" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on dextrose carbon source" EXACT [PomBase:al]
synonym: "normal vegetative cell population growth on glucose carbon source" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-06-15T14:22:57Z

[Term]
id: FYPO:0001165
name: inviable cell following anaerobic growth
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell that is exposed to anaerobic conditions fails to grow upon being returned to aerobic conditions, and eventually dies." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "essential following anaerobic growth" RELATED [PomBase:mah]
synonym: "inviable following anaerobic vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001489 ! inviable vegetative cell
created_by: midori
creation_date: 2012-06-15T14:28:05Z

[Term]
id: FYPO:0001166
name: normal cell population growth on fructose carbon source
def: "A vegetative cell population growth phenotype in which cells grow normally in a medium containing fructose as the carbon source." [PomBase:mah]
synonym: "normal growth on fructose carbon source" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on fructose carbon source" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-06-18T14:58:12Z

[Term]
id: FYPO:0001167
name: abnormal ATPase activity
def: "A molecular function phenotype in which the observed rate of ATPase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-06-18T15:16:22Z

[Term]
id: FYPO:0001168
name: decreased ATPase activity
def: "A molecular function phenotype in which the observed rate of ATPase activity is decreased." [PomBase:mah]
synonym: "reduced ATPase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0001167 ! abnormal ATPase activity
created_by: midori
creation_date: 2012-06-18T15:16:30Z

[Term]
id: FYPO:0001169
name: normal proton transport
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which proton (H+) transport is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal hydrogen ion transport" EXACT [PomBase:mah]
synonym: "normal proton transport during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001071 ! normal transport
created_by: midori
creation_date: 2012-06-18T15:18:27Z

[Term]
id: FYPO:0001170
name: decreased methionine import during nitrogen starvation
def: "A cellular process phenotype in which the import of methionine into the cell occurs to a lower extent than normal when the cell is subject to nitrogen starvation." [PomBase:mah]
synonym: "decreased methionine import into cell during nitrogen starvation" EXACT [PomBase:al]
synonym: "decreased methionine transport into cell during nitrogen starvation" EXACT [PomBase:al]
synonym: "decreased methionine uptake during nitrogen starvation" EXACT [GO:0036233]
synonym: "reduced methionine import during nitrogen starvation" EXACT [PomBase:mah]
is_a: FYPO:0001558 ! decreased methionine import
is_a: FYPO:0001648 ! abnormal amino acid import during nitrogen starvation
created_by: midori
creation_date: 2012-06-18T15:29:46Z

[Term]
id: FYPO:0001171
name: decreased cellular pH
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the measured intracellular pH is lower than normal." [PomBase:mah]
synonym: "decreased cellular pH during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased cellular pH level" EXACT [PomBase:al]
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2012-06-18T15:37:06Z

[Term]
id: FYPO:0001172
name: abnormal 7-methylguanosine cap hypermethylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which hypermethylation of the 7-(mono)methylguanosine (m(7)G) cap structure at the 2' position of the guanosine residue to form a 2,2,7-trimethylguanosine cap structure is abnormal." [PomBase:mah]
synonym: "abnormal 2,2,7-trimethylguanosine cap formation" EXACT [GO:0036261, PomBase:mah]
synonym: "abnormal 7-methylguanosine cap hypermethylation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal conversion of m(7)G to m(3)G" EXACT [GO:0036261, PomBase:mah]
synonym: "abnormal snoRNA capping" NARROW [GO:0036261, PomBase:mah]
synonym: "abnormal snRNA capping" NARROW [GO:0036261, PomBase:mah]
synonym: "abnormal TMG cap formation" EXACT [GO:0036261, PomBase:mah]
is_a: FYPO:0000370 ! abnormal RNA modification
is_a: FYPO:0001553 ! abnormal RNA processing
created_by: midori
creation_date: 2012-06-18T15:51:40Z

[Term]
id: FYPO:0001173
name: abolished 7-methylguanosine cap hypermethylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which hypermethylation of the 7-(mono)methylguanosine (m(7)G) cap structure at the 2' position of the guanosine residue to form a 2,2,7-trimethylguanosine cap structure is abolished." [PomBase:mah]
synonym: "2,2,7-trimethylguanosine cap formation abolished" EXACT [GO:0036261, PomBase:mah]
synonym: "7-methylguanosine cap hypermethylation abolished" EXACT [PomBase:mah]
synonym: "7-methylguanosine cap hypermethylation abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "conversion of m(7)G to m(3)G abolished" EXACT [GO:0036261, PomBase:mah]
synonym: "snoRNA capping abolished" NARROW [GO:0036261, PomBase:mah]
synonym: "snRNA capping abolished" NARROW [GO:0036261, PomBase:mah]
synonym: "TMG cap formation abolished" EXACT [GO:0036261, PomBase:mah]
is_a: FYPO:0000371 ! abolished RNA modification
is_a: FYPO:0001172 ! abnormal 7-methylguanosine cap hypermethylation
created_by: midori
creation_date: 2012-06-18T15:57:19Z

[Term]
id: FYPO:0001174
name: normal cell population growth on sucrose carbon source
def: "A vegetative cell population growth phenotype in which cells grow normally in a medium containing sucrose as the carbon source." [PomBase:mah]
synonym: "normal growth on sucrose carbon source" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on sucrose carbon source" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-06-21T11:11:55Z

[Term]
id: FYPO:0001175
name: normal cell population growth on maltose carbon source
def: "A vegetative cell population growth phenotype in which cells grow normally in a medium containing maltose as the carbon source." [PomBase:mah]
synonym: "normal growth on maltose carbon source" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on maltose carbon source" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-06-21T11:12:36Z

[Term]
id: FYPO:0001176
name: decreased cell population growth on sucrose carbon source
def: "A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing sucrose as the carbon source." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "decreased growth on sucrose carbon source" BROAD [PomBase:mah]
synonym: "decreased vegetative cell growth on sucrose carbon source" EXACT [PomBase:mah]
synonym: "reduced cell growth on sucrose carbon source" RELATED [PomBase:mah]
synonym: "slow cell growth on sucrose carbon source" NARROW [PomBase:mah]
is_a: FYPO:0001355 ! decreased vegetative cell population growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-06-21T11:13:07Z

[Term]
id: FYPO:0001177
name: decreased cell population growth on trehalose carbon source
def: "A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing trehalose as the carbon source." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "decreased growth on trehalose carbon source" BROAD [PomBase:mah]
synonym: "decreased vegetative cell growth on trehalose carbon source" EXACT [PomBase:mah]
synonym: "reduced cell growth on trehalose carbon source" EXACT [PomBase:mah]
synonym: "slow cell growth on trehalose carbon source" NARROW [PomBase:mah]
is_a: FYPO:0001355 ! decreased vegetative cell population growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-06-21T11:13:29Z

[Term]
id: FYPO:0001178
name: loss of viability in stationary phase upon nitrogen depletion
def: "A cell population phenotype in which a smaller than normal proportion of the population remains viable when cells in a culture in stationary phase are deprived of nitrogen." [PomBase:mah]
comment: Use this term to annotate experiments in which a culture is grown to stationary phase under nitrogen-depleted conditions, and then the number of cells viable enough to form a colony upon return to conditions supporting vegetative growth is measured and compared to wild type.
synonym: "loss of viability upon nitrogen starvation" EXACT [PomBase:al]
synonym: "sensitive to nitrogen starvation" RELATED [PomBase:al]
is_a: FYPO:0000244 ! loss of viability upon nutrient depletion
is_a: FYPO:0000245 ! loss of viability in stationary phase
created_by: midori
creation_date: 2012-06-27T14:04:23Z

[Term]
id: FYPO:0001179
name: protein localization abolished during vegetative growth
def: "A cell phenotype in which a protein does not localize to, and is therefore absent from, a place where it is normally found in the vegetative growth phase of the life cycle." [PomBase:mah]
comment: We recommend using one of the more specific terms instead of annotating to this term directly, if possible. If this term is used, we recommend noting which protein(s) were used in the assay.
synonym: "abolished protein localization during vegetative growth" EXACT [PomBase:mah]
synonym: "protein absent from specific location in cell during vegetative growth" RELATED [PomBase:mah]
synonym: "protein localisation abolished during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
is_a: FYPO:0001375 ! protein localization abolished
created_by: midori
creation_date: 2012-06-27T15:07:09Z

[Term]
id: FYPO:0001180
name: increased protein tyrosine phosphorylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of tyrosine residues in one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal." [PomBase:mah]
synonym: "increased peptidyl-tyrosine phosphorylation" EXACT [GO:0018108, PomBase:mah]
synonym: "increased protein tyrosine phosphorylation during vegetative growth" EXACT [PomBase:mah]
synonym: "increased tyrosine phosphorylation" EXACT [PomBase:al]
is_a: FYPO:0001038 ! increased protein phosphorylation
created_by: midori
creation_date: 2012-06-27T15:32:08Z

[Term]
id: FYPO:0001181
name: normal maltase activity
def: "A molecular function phenotype in which the observed rate of maltose alpha-glucosidase (also known as maltase) activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal maltose alpha-glucosidase activity" EXACT [GO:0032450, PomBase:mah]
is_a: FYPO:0001182 ! normal alpha-glucosidase activity
created_by: midori
creation_date: 2012-07-05T13:33:02Z

[Term]
id: FYPO:0001182
name: normal alpha-glucosidase activity
def: "A molecular function phenotype in which the observed rate of an alpha-glucosidase activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2012-07-05T13:33:56Z

[Term]
id: FYPO:0001183
name: abnormal alpha-glucosidase activity
def: "A molecular function phenotype in which the observed rate of an alpha-glucosidase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-07-05T13:36:08Z

[Term]
id: FYPO:0001184
name: abnormal maltase activity
def: "A molecular function phenotype in which the observed rate of maltose alpha-glucosidase (also known as maltase) activity is abnormal." [PomBase:mah]
synonym: "abnormal maltose alpha-glucosidase activity" EXACT [GO:0032450, PomBase:mah]
is_a: FYPO:0001183 ! abnormal alpha-glucosidase activity
created_by: midori
creation_date: 2012-07-05T13:36:57Z

[Term]
id: FYPO:0001185
name: decreased alpha-glucosidase activity
def: "A molecular function phenotype in which the observed rate of an alpha-glucosidase activity is decreased." [PomBase:mah]
synonym: "reduced alpha-glucosidase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0001183 ! abnormal alpha-glucosidase activity
created_by: midori
creation_date: 2012-07-05T13:38:13Z

[Term]
id: FYPO:0001186
name: decreased maltase activity
def: "A molecular function phenotype in which the observed rate of maltose alpha-glucosidase (also known as maltase) activity is decreased." [PomBase:mah]
synonym: "decreased maltose alpha-glucosidase activity" EXACT [GO:0032450, PomBase:mah]
synonym: "reduced maltase activity" EXACT [PomBase:mah]
synonym: "reduced maltose alpha-glucosidase activity" RELATED [GO:0032450, PomBase:mah]
is_a: FYPO:0001184 ! abnormal maltase activity
is_a: FYPO:0001185 ! decreased alpha-glucosidase activity
created_by: midori
creation_date: 2012-07-05T13:38:33Z

[Term]
id: FYPO:0001187
name: decreased cell density in stationary phase
def: "A cell population phenotype in which a population reaches stationary phase at, and maintains, a lower cell density than wild type." [PomBase:mah]
synonym: "reduced cell density in stationary phase" EXACT [PomBase:mah]
is_a: FYPO:0000003 ! cell population phenotype
is_a: FYPO:0001985 ! abnormal phenotype
created_by: midori
creation_date: 2012-07-05T14:04:36Z

[Term]
id: FYPO:0001188
name: sensitive to Calcofluor White
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to Calcofluor White. Cells stop growing (and may die) at a concentration of Calcofluor White that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to Calcofluor White" EXACT [PomBase:mah]
synonym: "sensitive to Calcofluor White during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-07-05T14:32:40Z

[Term]
id: FYPO:0001189
name: sensitive to cilofungin
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to cilofungin. Cells stop growing (and may die) at a concentration of cilofungin that allows wild type cells to grow." [PomBase:mah]
comment: Cilofungin is an echinocandin antibiotic, related to echinocandin B.
synonym: "hypersensitive to cilofungin" EXACT [PomBase:mah]
synonym: "sensitive to cilofungin during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-07-05T14:34:21Z

[Term]
id: FYPO:0001190
name: sensitive to cell wall-degrading enzymes
alt_id: FYPO:0001191
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to one or more enzymes that degrades cell wall polysaccharides. Cells stop growing (and may die) at a concentration of such enzymes that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to cell wall-degrading enzymes" EXACT [PomBase:mah]
synonym: "sensitive to beta-1,3-glucan laminaripentaohydrolase" NARROW [PomBase:al, PomBase:mah]
synonym: "sensitive to cell wall-degrading enzymes during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to lysing enzymes from Trichoderma harzianum" NARROW [PomBase:al]
synonym: "sensitive to Lyticase" NARROW [PomBase:mah]
synonym: "sensitive to Novozyme 234" NARROW [PomBase:mah]
synonym: "sensitive to Zymolyase" NARROW [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-07-05T14:41:18Z

[Term]
id: FYPO:0001192
name: normal cell population growth on cell wall-degrading enzymes
alt_id: FYPO:0001193
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which vegetative cell growth is normal (i.e. indistinguishable from wild type) in a medium containing one or more enzymes that degrades cell wall polysaccharides." [PomBase:mah]
synonym: "normal cell population growth in presence of cell wall-degrading enzymes" EXACT [PomBase:mah]
synonym: "normal cell population growth on beta-1,3-glucan laminaripentaohydrolase" NARROW [PomBase:al, PomBase:mah]
synonym: "normal cell population growth on lysing enzymes from Trichoderma harzianum" NARROW [PomBase:al]
synonym: "normal cell population growth on Lyticase" NARROW [PomBase:mah]
synonym: "normal cell population growth on Novozyme 234" NARROW [PomBase:mah]
synonym: "normal cell population growth on Zymolyase" NARROW [PomBase:mah]
synonym: "normal cellular response to cell wall-degrading enzymes" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on cell wall-degrading enzymes" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on cell wall-degrading enzymes" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-07-05T15:35:28Z

[Term]
id: FYPO:0001194
name: increased beta-glucan level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of beta-D-glucan measured in the cell is greater than normal." [PomBase:mah]
synonym: "increased beta-D-glucan level" EXACT [CHEBI:28793, PomBase:mah]
synonym: "increased beta-glucan accumulation" RELATED [PomBase:mah]
synonym: "increased beta-glucan level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased cellular beta-glucan level" EXACT [PomBase:mah]
is_a: FYPO:0000027 ! abnormal cell wall
is_a: FYPO:0001083 ! increased polysaccharide level
is_a: FYPO:0001118 ! abnormal vegetative cell morphology
created_by: midori
creation_date: 2012-07-05T15:53:01Z

[Term]
id: FYPO:0001195
name: decreased galactomannan level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of galactomannan measured in the cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular galactomannan level" EXACT [PomBase:mah]
synonym: "decreased galactomannan accumulation" RELATED [PomBase:mah]
synonym: "decreased galactomannan level during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced galactomannan level" EXACT [PomBase:mah]
is_a: FYPO:0001080 ! decreased polysaccharide level
created_by: midori
creation_date: 2012-07-05T15:54:27Z

[Term]
id: FYPO:0001196
name: normal alpha-glucan level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of alpha-D-glucan measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal alpha-D-glucan level" EXACT [CHEBI:22385, PomBase:mah]
synonym: "normal alpha-glucan accumulation" RELATED [PomBase:mah]
synonym: "normal alpha-glucan level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal cellular alpha-glucan level" EXACT [PomBase:al]
is_a: FYPO:0001077 ! normal polysaccharide level
created_by: midori
creation_date: 2012-07-05T15:55:45Z

[Term]
id: FYPO:0001197
name: decreased cellular calcium level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of calcium ion measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased calcium accumulation" RELATED [PomBase:al]
synonym: "decreased cellular calcium ion level" EXACT [PomBase:mah]
synonym: "decreased cellular calcium level during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced cellular calcium level" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
is_a: FYPO:0001462 ! altered cellular calcium level
created_by: midori
creation_date: 2012-07-05T16:12:05Z

[Term]
id: FYPO:0001198
name: increased cellular calcium level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of calcium ion measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased calcium accumulation" RELATED [PomBase:mah]
synonym: "increased cellular calcium ion level" EXACT [PomBase:mah]
synonym: "increased cellular calcium level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
is_a: FYPO:0001462 ! altered cellular calcium level
created_by: midori
creation_date: 2012-07-05T16:13:54Z

[Term]
id: FYPO:0001199
name: normal cellular calcium level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of calcium ion measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular calcium accumulation" RELATED [PomBase:mah]
synonym: "normal cellular calcium ion level" EXACT [PomBase:mah]
synonym: "normal cellular calcium level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-07-05T16:14:49Z

[Term]
id: FYPO:0001200
name: abnormal cellular response to calcium starvation
def: "A stress response phenotype observed in the vegetative growth phase of the life cycle in which the response to calcium starvation is abnormal." [PomBase:mah]
synonym: "abnormal cellular response to calcium ion starvation" EXACT [GO:0072732, PomBase:mah]
synonym: "abnormal cellular response to calcium starvation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001339 ! abnormal cellular response to starvation during vegetative growth
created_by: midori
creation_date: 2012-07-05T16:38:24Z

[Term]
id: FYPO:0001201
name: sensitive to calcium starvation
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to calcium starvation." [PomBase:mah]
synonym: "hypersensitive to calcium starvation" EXACT [PomBase:mah]
synonym: "sensitive to calcium ion starvation" EXACT [GO:0072732, PomBase:mah]
synonym: "sensitive to calcium starvation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000304 ! sensitive to stress
is_a: FYPO:0001200 ! abnormal cellular response to calcium starvation
created_by: midori
creation_date: 2012-07-05T16:43:08Z

[Term]
id: FYPO:0001202
name: normal cellular response to calcium starvation
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to calcium starvation is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular response to calcium ion starvation" EXACT [GO:0072732, PomBase:mah]
synonym: "normal cellular response to calcium starvation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000968 ! normal cellular response to stress
created_by: midori
creation_date: 2012-07-05T16:45:20Z

[Term]
id: FYPO:0001203
name: coflocculating cells
def: "A cell population phenotype that reflects increased occurrence of coflocculation. In coflocculation, yeast cells coaggregate with cells of another species, usually bacteria." [PMID:11472912, PomBase:mah]
comment: Note: coflocculation between S. pombe and E. coli is sensitive to mannose but not to glucose or galactose. Plant lectins such as HHA, GNA, NPA, or Concanavalin A (ConA) decrease but do not abolish S. pombe-E. coli coflocculation. Cations have different effects: Li+, Na+, K+, Mg2+ or Mn2+ increase coflocculation, Co2+, Zn2+ , and Ca2+ have no effect, and Cu2+ or Hg2+ completely abolish coflocculation.
synonym: "co-flocculating cells" EXACT [PomBase:mah]
synonym: "increased coflocculation" EXACT [PomBase:mah]
is_a: FYPO:0000155 ! flocculating cells
created_by: midori
creation_date: 2012-07-06T15:40:35Z

[Term]
id: FYPO:0001204
name: mistimed mitosis
def: "A cellular process phenotype in which cells enter mitosis earlier or later than normal, relative to cell size or DNA integrity checkpoint status." [PomBase:mah]
synonym: "abnormal onset of mitosis" EXACT [PomBase:mah]
synonym: "mistimed mitosis during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000337 ! abnormal mitosis
created_by: midori
creation_date: 2012-07-06T16:15:36Z

[Term]
id: FYPO:0001205
name: abolished alpha-glucosidase activity
def: "A molecular function phenotype in which alpha-glucosidase activity is absent." [PomBase:mah]
synonym: "alpha-glucosidase activity abolished" EXACT [PomBase:mah]
is_a: FYPO:0000664 ! abolished catalytic activity
created_by: midori
creation_date: 2012-07-09T17:10:25Z

[Term]
id: FYPO:0001206
name: abolished maltase activity
def: "A molecular function phenotype in which maltase activity is absent." [PomBase:mah]
synonym: "abolished protease activity" EXACT [PomBase:mah]
synonym: "maltase activity abolished" EXACT [PomBase:mah]
is_a: FYPO:0001184 ! abnormal maltase activity
is_a: FYPO:0001205 ! abolished alpha-glucosidase activity
created_by: midori
creation_date: 2012-07-09T17:13:55Z

[Term]
id: FYPO:0001207
name: sensitive to raffinose
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to raffinose. Cells stop growing (and may die) at a concentration of raffinose that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to raffinose" EXACT [PomBase:mah]
synonym: "sensitive to raffinose during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-07-12T10:30:03Z

[Term]
id: FYPO:0001208
name: substance absent from cell during vegetative growth
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in a cell is too low to detect." [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
is_a: FYPO:0001888 ! substance absent from cell
created_by: midori
creation_date: 2012-07-12T12:09:35Z

[Term]
id: FYPO:0001209
name: polysaccharide absent from cell
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a polysaccharide measured in a cell is too low to detect." [PomBase:mah]
synonym: "polysaccharide absent from cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001080 ! decreased polysaccharide level
is_a: FYPO:0001208 ! substance absent from cell during vegetative growth
created_by: midori
creation_date: 2012-07-12T12:12:20Z

[Term]
id: FYPO:0001210
name: Glc2Man9GlcNAc absent from cell
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of Glc2Man9GlcNAc2 measured in a cell is too low to detect. Glc2Man9GlcNAc2 is an N-glycan that is involved in post-translational modification of proteins, and consists of a branched ten-membered mannooligosaccharide containing two D-glucose residues, nine D-mannosyl residues and two N-acetylglucosamine residues." [CHEBI:59082, PomBase:mah]
comment: Note that these terms treat Man(n)GlcNAc and Man(n)GlcNAc2 as equivalent. The reason is that the GlcNAc2 form is attached to N-linked glycoproteins, but the GlcNAc form is what is usually detected in experiments, following cleavage by endoglycosidase H. For the purposes of observing and interpreting phenotypes, the difference is not significant.
synonym: "absent Glc2Man9GlcNAc" EXACT [PomBase:al]
synonym: "Glc2Man9GlcNAc absent from cell during vegetative growth" EXACT [PomBase:mah]
synonym: "Glc2Man9GlcNAc2 absent from cell" EXACT [PomBase:mah]
is_a: FYPO:0001209 ! polysaccharide absent from cell
created_by: midori
creation_date: 2012-07-12T12:13:39Z

[Term]
id: FYPO:0001211
name: Glc3Man9GlcNAc absent from cell
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of Glc3Man9GlcNAc measured in a cell is too low to detect. Glc3Man9GlcNAc2 is an N-glycan that is involved in post-translational modification of proteins, and consists of a branched ten-membered mannooligosaccharide containing three D-glucose residues, nine D-mannosyl residues and two N-acetylglucosamine residues." [CHEBI:53019, PomBase:mah]
comment: Note that these terms treat Man(n)GlcNAc and Man(n)GlcNAc2 as equivalent. The reason is that the GlcNAc2 form is attached to N-linked glycoproteins, but the GlcNAc form is what is usually detected in experiments, following cleavage by endoglycosidase H. For the purposes of observing and interpreting phenotypes, the difference is not significant.
synonym: "absent Glc3Man9GlcNAc" EXACT [PomBase:al]
synonym: "Glc3Man9GlcNAc absent from cell during vegetative growth" EXACT [PomBase:mah]
synonym: "Glc3Man9GlcNAc2 absent from cell" EXACT [PomBase:mah]
is_a: FYPO:0001209 ! polysaccharide absent from cell
is_a: FYPO:0001289 ! decreased phospholipid level
created_by: midori
creation_date: 2012-07-12T12:15:33Z

[Term]
id: FYPO:0001212
name: decreased Glc1Man9GlcNAc level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of Glc1Man9GlcNAc2 measured in a cell is lower than normal. Glc1Man9GlcNAc2 is an N-glycan that is involved in post-translational modification of proteins, and consists of a branched ten-membered mannooligosaccharide containing one D-glucose residue, nine D-mannosyl residues and two N-acetylglucosamine residues." [CHEBI:59080, PomBase:mah]
comment: Note that these terms treat Man(n)GlcNAc and Man(n)GlcNAc2 as equivalent. The reason is that the GlcNAc2 form is attached to N-linked glycoproteins, but the GlcNAc form is what is usually detected in experiments, following cleavage by endoglycosidase H. For the purposes of observing and interpreting phenotypes, the difference is not significant.
synonym: "decreased cellular Glc1Man9GlcNAc level" EXACT [PomBase:al]
synonym: "decreased Glc1Man9GlcNAc accumulation" RELATED [PomBase:mah]
synonym: "decreased Glc1Man9GlcNAc level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased Glc1Man9GlcNAc2 level" EXACT [PomBase:mah]
synonym: "reduced Glc1Man9GlcNAc level" EXACT [PomBase:mah]
is_a: FYPO:0001080 ! decreased polysaccharide level
created_by: midori
creation_date: 2012-07-12T12:16:24Z

[Term]
id: FYPO:0001213
name: increased Man8GlcNAc level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of Man8GlcNAc2 measured in a cell is higher than normal. Man8GlcNAc2 is any N-glycan that consists of a branched ten-membered mannooligosaccharide containing eight D-mannosyl residues and two N-acetylglucosamine residues." [CHEBI:64048, CHEBI:64052, PomBase:mah]
comment: Note that these terms treat Man(n)GlcNAc and Man(n)GlcNAc2 as equivalent. The reason is that the GlcNAc2 form is attached to N-linked glycoproteins, but the GlcNAc form is what is usually detected in experiments, following cleavage by endoglycosidase H. For the purposes of observing and interpreting phenotypes, the difference is not significant.
synonym: "increased cellular Man8GlcNAc level" EXACT [PomBase:al]
synonym: "increased Man8GlcNAc accumulation" RELATED [PomBase:mah]
synonym: "increased Man8GlcNAc level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased Man8GlcNAc2 level" EXACT [PomBase:mah]
is_a: FYPO:0001083 ! increased polysaccharide level
created_by: midori
creation_date: 2012-07-12T12:17:32Z

[Term]
id: FYPO:0001214
name: sensitive to potassium chloride
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to potassium chloride. Cells stop growing (and may die) at a concentration of potassium chloride that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to potassium chloride" EXACT [PomBase:mah]
synonym: "sensitive to potassium chloride during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-07-12T14:21:19Z

[Term]
id: FYPO:0001215
name: normal protein complex assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the assembly of a protein complex at the cellular level is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular protein complex assembly" EXACT [GO:0043623]
synonym: "normal protein complex assembly during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2012-07-12T14:30:00Z

[Term]
id: FYPO:0001216
name: normal SAGA complex assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the assembly of a SAGA complex onto chromatin is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal SAGA complex assembly during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001215 ! normal protein complex assembly
created_by: midori
creation_date: 2012-07-12T14:32:23Z

[Term]
id: FYPO:0001217
name: abnormal nuclear import
def: "A cellular process phenotype in which nuclear import is abnormal. Nuclear import is the directed movement of any substance out of the nucleus; import of all substances or a specific substance may be affected." [PomBase:mah]
synonym: "abnormal nuclear import during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000518 ! abnormal nuclear transport
created_by: midori
creation_date: 2012-07-12T14:39:54Z

[Term]
id: FYPO:0001218
name: abolished nuclear export during cellular response to nitrogen starvation
def: "A cellular process phenotype in which nuclear export does not occur when the cell is subject to nitrogen starvation. Nuclear export is the directed movement of any substance out of the nucleus; export of all substances or a specific substance may be affected." [PomBase:mah]
synonym: "absent nuclear export during response to nitrogen starvation" EXACT [PomBase:mah]
synonym: "nuclear export during response to nitrogen starvation abolished" EXACT [PomBase:mah]
synonym: "nuclear export during response to nitrogen starvation abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "nuclear export in response to nitrogen starvation abolished" EXACT [PomBase:al]
is_a: FYPO:0000507 ! abolished nuclear export
created_by: midori
creation_date: 2012-07-12T14:41:50Z

[Term]
id: FYPO:0001219
name: increased protein level during cellular response to nitrogen starvation
def: "A cell phenotype in which the amount of protein measured in a cell during a cellular response to nitrogen starvation is higher than normal. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "increased protein accumulation during cellular response to nitrogen starvation" RELATED [PomBase:mah]
is_a: FYPO:0000836 ! increased protein level
created_by: midori
creation_date: 2012-07-12T15:10:12Z

[Term]
id: FYPO:0001220
name: increased protein level during cellular response to pheromone
def: "A cell phenotype in which the amount of protein measured in a cell during a cellular response to a pheromone is higher than normal. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "increased protein accumulation during cellular response to pheromone" RELATED [PomBase:mah]
synonym: "increased protein level during cellular response to pheromone during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001327 ! increased protein level during vegetative growth
created_by: midori
creation_date: 2012-07-12T15:13:41Z

[Term]
id: FYPO:0001221
name: normal nucleus:cytoplasm ratio
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the ratio of the nuclear volume to the total cell volume is in the same range as wild type (approximately 0.076-0.089)." [PMID:17998401, PomBase:mah]
synonym: "normal nuclear:cytoplasmic ratio" EXACT [PomBase:mah]
synonym: "normal nuclear:cytoplasmic volume ratio" EXACT [PomBase:mah]
synonym: "normal nucleus:cell volume ratio" EXACT [PomBase:mah]
synonym: "normal nucleus:cytoplasm ratio during vegetative growth" EXACT [PomBase:mah]
synonym: "normal nucleus:cytoplasm volume ratio" EXACT [PomBase:mah]
is_a: FYPO:0001312 ! normal vegetative phenotype
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2012-07-12T15:15:47Z

[Term]
id: FYPO:0001222
name: binucleate
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which a cell contains two nuclei." [PomBase:mah]
synonym: "binucleate cells" EXACT [PomBase:al]
synonym: "binucleate during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000061 ! multinucleate
created_by: midori
creation_date: 2012-07-12T15:37:08Z

[Term]
id: FYPO:0001223
name: binucleate multiseptate cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has two nuclei and more than one septum. The septa are grouped together between the two nuclei." [PomBase:mah]
synonym: "binucleate multiseptate cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001222 ! binucleate
is_a: FYPO:0001252 ! multinucleate multiseptate cell
relationship: has_part FYPO:0000118 ! multiseptate
relationship: has_part FYPO:0001222 ! binucleate
created_by: midori
creation_date: 2012-07-12T15:39:43Z

[Term]
id: FYPO:0001224
name: binucleate monoseptate cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has two nuclei and one septum." [PomBase:mah]
synonym: "binucleate monoseptate cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001222 ! binucleate
is_a: FYPO:0001225 ! monoseptate
relationship: has_part FYPO:0001222 ! binucleate
relationship: has_part FYPO:0001225 ! monoseptate
created_by: midori
creation_date: 2012-07-12T15:40:42Z

[Term]
id: FYPO:0001225
name: monoseptate
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which a cell contains a single septum." [PomBase:mah]
synonym: "monoseptate during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2012-07-12T15:42:41Z

[Term]
id: FYPO:0001226
name: mononucleate with mislocalized septum
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which a cell contains a single nucleus and an asymmetrically located septum." [PomBase:mah]
synonym: "mononucleate with abnormal septum location" EXACT [PomBase:mah]
synonym: "mononucleate with abnormal septum position" EXACT [PomBase:mah]
synonym: "mononucleate with asymmetric septum" EXACT [PomBase:mah]
synonym: "mononucleate with asymmetrically located septum" EXACT [PomBase:mah]
synonym: "mononucleate with mislocalised septum" EXACT [PomBase:mah]
synonym: "mononucleate with mislocalized septum during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000339 ! mislocalized septum
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
is_a: FYPO:0002000 ! septated mononucleate cell
relationship: has_part FYPO:0000060 ! mononucleate
relationship: has_part FYPO:0000339 ! mislocalized septum
created_by: midori
creation_date: 2012-07-12T15:44:34Z

[Term]
id: FYPO:0001227
name: protein mislocalized to cytoplasm during cellular response to hydrogen peroxide
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found in the cytoplasm is observed there, during a cellular response to hydrogen peroxide." [PomBase:mah]
comment: Note that this term can be used to annotate any case where a protein is found in the cytoplasm in a mutant, but not in wild type. In some cases, there may be enough additional information to annotate to 'abnormal protein localization' (FYPO:0000443) or one of its descendants.
synonym: "protein mislocalised to cytoplasm during cellular response to hydrogen peroxide" EXACT [PomBase:mah]
synonym: "protein mislocalized to cytoplasm during cellular response to hydrogen peroxide during vegetative growth" EXACT [PomBase:mah]
synonym: "protein mislocalized to cytoplasm in response to hydrogen peroxide" EXACT [PomBase:al]
is_a: FYPO:0000783 ! protein mislocalized to cytoplasm
created_by: midori
creation_date: 2012-07-13T16:15:07Z

[Term]
id: FYPO:0001228
name: nuclear protein accumulation during cellular response to hydrogen peroxide
def: "A localization phenotype observed in the vegetative growth phase of the life cycle in which specific proteins abnormally accumulate, and are constitutively located in, the nucleus during a cellular response to hydrogen peroxide." [PomBase:mah]
synonym: "nuclear accumulation of protein during cellular response to hydrogen peroxide" EXACT [PomBase:mah]
synonym: "nuclear protein accumulation during cellular response to hydrogen peroxide during vegetative growth" EXACT [PomBase:mah]
synonym: "nuclear protein accumulation in response to hydrogen peroxide" EXACT [PomBase:al]
is_a: FYPO:0000255 ! nuclear protein accumulation
created_by: midori
creation_date: 2012-07-13T16:39:13Z

[Term]
id: FYPO:0001229
name: abnormal cell cortex morphology
def: "A cellular structure phenotype in which the morphology of all or part of the cell cortex is abnormal. The cell cortex is the region of a cell that lies just beneath the plasma membrane." [GO:0005938, PomBase:mah]
comment: Note that an abnormal cell cortex organization process may, but does not necessarily, result in abnormal cell cortex morphology.
is_a: FYPO:0000287 ! abnormal subcellular structure
created_by: midori
creation_date: 2012-07-16T13:51:27Z

[Term]
id: FYPO:0001230
name: abnormal cell cortex morphology during nitrogen starvation
def: "A cellular structure phenotype in which the morphology of all or part of the cell cortex is abnormal when the cell is subject to nitrogen starvation. The cell cortex is the region of a cell that lies just beneath the plasma membrane." [GO:0005938, PomBase:mah]
comment: Note that an abnormal cell cortex organization process may, but does not necessarily, result in abnormal cell cortex morphology.
is_a: FYPO:0001229 ! abnormal cell cortex morphology
created_by: midori
creation_date: 2012-07-16T13:52:15Z

[Term]
id: FYPO:0001231
name: normal cell cortex morphology
def: "A cellular structure phenotype in which the morphology of all or part of the cell cortex is normal (i.e. indistinguishable from wild type). The cell cortex is the region of a cell that lies just beneath the plasma membrane." [GO:0005938, PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype: Note that an abnormal cell cortex organization process may, but does not necessarily, result in abnormal cell cortex morphology.
subset: qc_do_not_manually_annotate
is_a: FYPO:0001233 ! normal subcellular structure
created_by: midori
creation_date: 2012-07-16T13:54:21Z

[Term]
id: FYPO:0001232
name: normal cell cortex morphology during nitrogen starvation
def: "A cellular structure phenotype in which the morphology of all or part of the cell cortex is normal when the cell is subject to nitrogen starvation. The cell cortex is the region of a cell that lies just beneath the plasma membrane." [GO:0005938, PomBase:mah]
comment: Note that an abnormal cell cortex organization process may, but does not necessarily, result in abnormal cell cortex morphology.
is_a: FYPO:0001231 ! normal cell cortex morphology
created_by: midori
creation_date: 2012-07-16T13:56:11Z

[Term]
id: FYPO:0001233
name: normal subcellular structure
def: "A cell phenotype in which the amount, distribution, or morphology of a cell part is normal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "normal cellular pH level" EXACT [PomBase:al]
is_a: FYPO:0000136 ! cellular structure phenotype
is_a: FYPO:0000257 ! normal phenotype
created_by: midori
creation_date: 2012-07-16T13:59:40Z

[Term]
id: FYPO:0001234
name: slow vegetative cell population growth
def: "A cell population phenotype in which vegetative cell population growth is slower than normal." [PomBase:mah]
comment: Use this term when growth rate, e.g. as measured by population doubling time, is reduced. Note that with growth on plates, growth rate can be difficult to assess, so it may be better to use 'decreased cell growth' (FYPO:0000046). Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "decreased vegetative cell population growth rate" EXACT [PomBase:mah]
synonym: "growth defect, slow growth" BROAD [PomBase:mah]
synonym: "reduced vegetative cell population growth rate" EXACT [PomBase:mah]
is_a: FYPO:0001356 ! abnormal vegetative cell population growth
created_by: midori
creation_date: 2012-07-16T14:20:51Z

[Term]
id: FYPO:0001235
name: decreased extent of cell population growth
def: "A cellular process phenotype in which cell growth in a cell population occurs to a lower extent than normal, i.e. the population stops growing earlier than normal." [PomBase:mah]
is_a: FYPO:0000003 ! cell population phenotype
is_a: FYPO:0001985 ! abnormal phenotype
relationship: has_part FYPO:0000046 ! decreased cell population growth
created_by: midori
creation_date: 2012-07-16T14:25:09Z

[Term]
id: FYPO:0001236
name: normal cell population growth on cycloheximide
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing cycloheximide." [PomBase:mah]
synonym: "normal cell population growth in presence of cycloheximide" EXACT [PomBase:mah]
synonym: "normal cellular response to cycloheximide" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on cycloheximide" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on cycloheximide" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-07-16T15:25:03Z

[Term]
id: FYPO:0001237
name: normal cell population growth on cadmium
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing cadmium ions." [PomBase:mah]
synonym: "normal cell population growth in presence of cadmium" EXACT [PomBase:mah]
synonym: "normal cell population growth on cadmium ion" EXACT [PomBase:mah]
synonym: "normal cellular response to cadmium" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on cadmium" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on cadmium" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-07-16T15:25:47Z

[Term]
id: FYPO:0001238
name: normal cell population growth on staurosporine
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing staurosporine." [PomBase:mah]
synonym: "normal cell population growth in presence of staurosporine" EXACT [PomBase:mah]
synonym: "normal cellular response to staurosporine" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on staurosporine" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on staurosporine" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-07-16T15:27:03Z

[Term]
id: FYPO:0001239
name: normal cell population growth on t-BOOH
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing tert-butyl hydroperoxide (t-BOOH)." [PomBase:mah]
synonym: "normal cell population growth in presence of t-BOOH" EXACT [PomBase:mah]
synonym: "normal cell population growth on 2-methyl-prop-2-yl-hydroperoxide" EXACT [CHEBI:365419]
synonym: "normal cell population growth on tert-butyl hydroperoxide" EXACT [PomBase:mah]
synonym: "normal cellular response to t-BOOH" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on t-BOOH" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on t-BOOH" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-07-16T15:28:00Z

[Term]
id: FYPO:0001240
name: normal cell population growth on diamide
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing N,N,N',N'-tetramethyldiazene-1,2-dicarboxamide, also known as diamide." [PomBase:mah]
synonym: "normal cell population growth in presence of diamide" EXACT [PomBase:mah]
synonym: "normal cell population growth on N,N,N',N'-tetramethyldiazene-1,2-dicarboxamide" EXACT [CHEBI:48958, PomBase:mah]
synonym: "normal cellular response to diamide" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on diamide" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on diamide" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-07-16T15:30:45Z

[Term]
id: FYPO:0001241
name: normal cell population growth on anisomycin
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing anisomycin." [PomBase:mah]
synonym: "normal cell population growth in presence of anisomycin" EXACT [PomBase:mah]
synonym: "normal cellular response to anisomycin" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on anisomycin" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on anisomycin" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-07-16T15:31:50Z

[Term]
id: FYPO:0001242
name: increased RNA level during cellular response to adenine starvation
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to adenine starvation is higher than normal. Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "increased mRNA level during cellular response to adenine starvation" NARROW [PomBase:mah]
synonym: "increased RNA accumulation during cellular response to adenine starvation" RELATED [PomBase:mah]
synonym: "increased RNA level during cellular response to adenine starvation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000825 ! increased RNA level during vegetative growth
created_by: midori
creation_date: 2012-07-16T15:56:42Z

[Term]
id: FYPO:0001243
name: increased RNA level during cellular response to vitamin B1
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to vitamin B1 is higher than normal. Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "increased mRNA level during cellular response to vitamin B1" NARROW [PomBase:mah]
synonym: "increased RNA accumulation during cellular response to vitamin B1" RELATED [PomBase:mah]
synonym: "increased RNA level during cellular response to thiamine" EXACT [GO:0071301, PomBase:mah]
synonym: "increased RNA level during cellular response to vitamin B1 during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000825 ! increased RNA level during vegetative growth
created_by: midori
creation_date: 2012-07-16T15:57:59Z

[Term]
id: FYPO:0001244
name: decreased RNA level during cellular response to vitamin B1 starvation
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to vitamin B1 starvation is lower than normal. Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "decreased mRNA level during cellular response to vitamin B1 starvation" NARROW [PomBase:mah]
synonym: "decreased RNA accumulation during cellular response to vitamin B1 starvation" RELATED [PomBase:mah]
synonym: "decreased RNA level during cellular response to thiamine starvation" EXACT [GO:0036225, PomBase:mah]
synonym: "decreased RNA level during cellular response to vitamin B1 starvation during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced RNA level during cellular response to vitamin B1 starvation" EXACT [PomBase:mah]
is_a: FYPO:0001117 ! decreased RNA level during vegetative growth
created_by: midori
creation_date: 2012-07-16T16:01:16Z

[Term]
id: FYPO:0001245
name: sensitive to cobalt
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to cobalt ions." [PomBase:mah]
synonym: "hypersensitive to cobalt" EXACT [PomBase:mah]
synonym: "sensitive to cobalt during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to cobalt ions" EXACT [CHEBI:23336]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-07-16T16:15:13Z

[Term]
id: FYPO:0001246
name: normal RNA level during cellular response to hydrogen peroxide
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to hydrogen peroxide is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "normal mRNA level during cellular response to hydrogen peroxide" NARROW [PomBase:mah]
synonym: "normal RNA accumulation during cellular response to hydrogen peroxide" RELATED [PomBase:mah]
synonym: "normal RNA level during cellular response to hydrogen peroxide during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001317 ! normal RNA level during vegetative growth
created_by: midori
creation_date: 2012-07-17T13:17:07Z

[Term]
id: FYPO:0001248
name: abnormal regulation of DNA replication initiation
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which regulation of the initiation of DNA-dependent DNA replication is abnormal." [PomBase:mah]
synonym: "abnormal regulation of DNA replication initiation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal regulation of DNA-dependent DNA replication initiation" EXACT [GO:0006270, PomBase:mah]
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-07-17T13:25:25Z

[Term]
id: FYPO:0001249
name: increased origin firing efficiency
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which the probability that a DNA replication will initiate at a particular replication origin is higher than in wild type. In cells with increased origin firing efficiency, genomic DNA replication initiates from more origins than wild type, and is completed in more, smaller segments, than wild type." [PMID:18799612, PomBase:mah]
synonym: "increased origin firing efficiency during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001248 ! abnormal regulation of DNA replication initiation
created_by: midori
creation_date: 2012-07-17T13:28:55Z

[Term]
id: FYPO:0001250
name: decreased origin firing efficiency
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which the probability that a DNA replication will initiate at a particular replication origin is lower than in wild type. In cells with decreased origin firing efficiency, genomic DNA replication initiates from fewer origins than wild type, and is completed in fewer, larger segments, than wild type." [PMID:18799612, PomBase:mah]
synonym: "decreased origin firing efficiency during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001248 ! abnormal regulation of DNA replication initiation
created_by: midori
creation_date: 2012-07-17T13:31:48Z

[Term]
id: FYPO:0001252
name: multinucleate multiseptate cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has two or more nuclei and more than one septum per cell." [PomBase:mah]
synonym: "multinucleate multiseptate cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000061 ! multinucleate
is_a: FYPO:0000118 ! multiseptate
relationship: has_part FYPO:0000061 ! multinucleate
relationship: has_part FYPO:0000118 ! multiseptate
created_by: midori
creation_date: 2012-07-19T15:38:21Z

[Term]
id: FYPO:0001253
name: multinucleate multiseptate cell, septa between nuclei
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has two or more nuclei and more than one septum, and the septa are located so as to form separate compartments with a single nucleus in each." [PomBase:mah]
synonym: "multinucleate multiseptate cell, septa between nuclei during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001252 ! multinucleate multiseptate cell
created_by: midori
creation_date: 2012-07-19T15:40:18Z

[Term]
id: FYPO:0001254
name: multinucleate multiseptate cell, septa grouped
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has two or more nuclei and more than one septum, and the septa are grouped together between two compartments, one or more of which may contain multiple nuclei." [PomBase:mah]
synonym: "multinucleate multiseptate cell, septa grouped during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0002002 ! multiseptate cell, septa grouped
created_by: midori
creation_date: 2012-07-19T15:41:59Z

[Term]
id: FYPO:0001255
name: increased protein level during cellular response to oxygen
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to the level of oxygen is higher than normal. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "increased protein accumulation during cellular response to oxygen" RELATED [PomBase:mah]
synonym: "increased protein level during cellular response to oxygen during vegetative growth" EXACT [PomBase:mah]
synonym: "increased protein level during cellular response to oxygen levels" EXACT [GO:0071453]
is_a: FYPO:0001327 ! increased protein level during vegetative growth
created_by: midori
creation_date: 2012-07-19T16:01:11Z

[Term]
id: FYPO:0001256
name: increased protein level during cellular response to hypoxia
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to hypoxia is higher than normal. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "increased protein accumulation during cellular response to hypoxia" RELATED [PomBase:mah]
synonym: "increased protein level during cellular response to hyperoxic stress" EXACT [GO:0071456]
synonym: "increased protein level during cellular response to hypoxia during vegetative growth" EXACT [PomBase:mah]
synonym: "increased protein level during cellular response to increased oxygen tension" EXACT [GO:0071456]
is_a: FYPO:0001255 ! increased protein level during cellular response to oxygen
is_a: FYPO:0001549 ! altered protein level during cellular response to hypoxia
created_by: midori
creation_date: 2012-07-19T16:03:44Z

[Term]
id: FYPO:0001257
name: normal protein level during cellular response to oxygen
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to the level of oxygen is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "normal protein accumulation during cellular response to oxygen" RELATED [PomBase:mah]
synonym: "normal protein level during cellular response to oxygen during vegetative growth" EXACT [PomBase:mah]
synonym: "normal protein level during cellular response to oxygen levels" EXACT [GO:0071453]
is_a: FYPO:0000833 ! normal protein level
created_by: midori
creation_date: 2012-07-19T16:05:22Z

[Term]
id: FYPO:0001258
name: normal protein level during cellular response to hypoxia
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to hypoxia is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "normal protein accumulation during cellular response to hypoxia" RELATED [PomBase:mah]
synonym: "normal protein level during cellular response to hyperoxic stress" EXACT [GO:0071456]
synonym: "normal protein level during cellular response to hypoxia during vegetative growth" EXACT [PomBase:mah]
synonym: "normal protein level during cellular response to increased oxygen tension" EXACT [GO:0071456]
is_a: FYPO:0001257 ! normal protein level during cellular response to oxygen
created_by: midori
creation_date: 2012-07-19T16:06:01Z

[Term]
id: FYPO:0001259
name: decreased RNA level during cellular response to hypoxia
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to hypoxia is lower than normal. Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "decreased protein level during cellular response to increased oxygen tension" EXACT [GO:0071456]
synonym: "decreased RNA accumulation during cellular response to hypoxia" RELATED [PomBase:mah]
synonym: "decreased RNA level during cellular response to hyperoxic stress" EXACT [GO:0071456]
synonym: "decreased RNA level during cellular response to hypoxia during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001117 ! decreased RNA level during vegetative growth
created_by: midori
creation_date: 2012-07-19T16:07:22Z

[Term]
id: FYPO:0001260
name: normal RNA level during cellular response to hypoxia
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to hypoxia is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "normal mRNA level during cellular response to hypoxia" NARROW [PomBase:mah]
synonym: "normal protein level during cellular response to increased oxygen tension" EXACT [GO:0071456]
synonym: "normal RNA accumulation during cellular response to hypoxia" RELATED [PomBase:mah]
synonym: "normal RNA level during cellular response to hyperoxic stress" EXACT [GO:0071456]
synonym: "normal RNA level during cellular response to hypoxia during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001317 ! normal RNA level during vegetative growth
created_by: midori
creation_date: 2012-07-19T16:10:05Z

[Term]
id: FYPO:0001261
name: decreased cytokinesis during cellular hyperosmotic response
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of cell cycle cytokinesis is decreased during a cellular hyperosmotic response." [PomBase:mah]
synonym: "decreased cytokinesis during cellular hyperosmotic response during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced cytokinesis during cellular hyperosmotic response" EXACT [PomBase:mah]
is_a: FYPO:0000418 ! decreased cytokinesis
created_by: midori
creation_date: 2012-07-19T16:20:14Z

[Term]
id: FYPO:0001262
name: stubby cell during cellular hyperosmotic response
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which the cell diameter is larger than normal and the cell length is shorter than normal, during a cellular hyperosmotic response." [PomBase:mah]
synonym: "stubby cell during cellular hyperosmotic response during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000024 ! stubby cell
created_by: midori
creation_date: 2012-07-19T16:21:16Z

[Term]
id: FYPO:0001263
name: branched cell during cellular hyperosmotic response
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is branched during a cellular hyperosmotic response. In branched cells, a daughter cell grows from near, and at approximately a right angle to, the septum of the mother cell, resulting in the formation of a branched, septated cell. Cell division may give rise to branched or unbranched daughter cells." [PomBase:jh, PomBase:mah]
synonym: "branched cell during cellular hyperosmotic response during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000015 ! branched cell
created_by: midori
creation_date: 2012-07-19T16:22:02Z

[Term]
id: FYPO:0001264
name: abnormal cell polarity during cellular hyperosmotic response
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the establishment or maintenance of cell polarity is abnormal during a cellular hyperosmotic response." [PomBase:mah]
synonym: "abnormal cell polarity during cellular hyperosmotic response during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal establishment or maintenance of cell polarity during cellular hyperosmotic response" EXACT [PomBase:mah]
synonym: "cell polarity defects during cellular hyperosmotic response" EXACT [PomBase:mah]
is_a: FYPO:0000026 ! abnormal cell polarity
created_by: midori
creation_date: 2012-07-19T16:23:32Z

[Term]
id: FYPO:0001265
name: increased protein phosphorylation during cellular hyperosmotic response
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal during a cellular hyperosmotic response." [PomBase:mah]
synonym: "increased protein phosphorylation during cellular hyperosmotic response during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001038 ! increased protein phosphorylation
created_by: midori
creation_date: 2012-07-19T16:27:02Z

[Term]
id: FYPO:0001266
name: normal protein phosphorylation during cellular response to salt stress
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal during a cellular response to salt stress." [PomBase:mah]
comment: When using this term, it is recommended to note the specific protein(s) affected.
synonym: "normal protein phosphorylation during cellular response to salt stress during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000776 ! normal protein phosphorylation
created_by: midori
creation_date: 2012-07-19T16:28:13Z

[Term]
id: FYPO:0001267
name: abolished nuclear export during cellular hypotonic salinity response
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear export does not occur when the cell is subject to a decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. Nuclear export is the directed movement of any substance out of the nucleus; export of all substances or a specific substance may be affected." [PomBase:mah]
synonym: "absent nuclear export during cellular hypotonic salinity response" EXACT [PomBase:mah]
synonym: "nuclear export during cellular hypotonic salinity response abolished" EXACT [PomBase:mah]
synonym: "nuclear export during cellular hypotonic salinity response abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "nuclear export in response to salt starvation abolished" EXACT [PomBase:al]
is_a: FYPO:0000507 ! abolished nuclear export
created_by: midori
creation_date: 2012-07-19T16:50:01Z

[Term]
id: FYPO:0001268
name: abnormal protein localization to kinetochore
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is abnormal." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found at the centromere and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to kinetochore" EXACT [PomBase:mah]
synonym: "abnormal protein localization to chromosome, centric region" EXACT [GO:0071459, PomBase:mah]
synonym: "abnormal protein localization to chromosome, centromeric region" EXACT [GO:0071459, PomBase:mah]
synonym: "abnormal protein localization to kinetochore during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
created_by: midori
creation_date: 2012-07-19T16:53:31Z

[Term]
id: FYPO:0001269
name: abolished protein localization to kinetochore
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is abolished." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abolished protein localisation to kinetochore" EXACT [PomBase:mah]
synonym: "abolished protein localization to kinetochore during vegetative growth" EXACT [PomBase:mah]
synonym: "protein localization to kinetochore abolished" EXACT [PomBase:mah]
is_a: FYPO:0001179 ! protein localization abolished during vegetative growth
is_a: FYPO:0001268 ! abnormal protein localization to kinetochore
created_by: midori
creation_date: 2012-07-19T16:54:02Z

[Term]
id: FYPO:0001270
name: complete but unequal mitotic sister chromatid separation
def: "A cellular process phenotype in which mitotic sister chromatid separation results in the separation of chromosomes into two distinct unequal masses, located at or near the ends of an elongated mitotic spindle." [PMID:22711988, PomBase:mah]
synonym: "complete but unequal mitotic chromosome separation" EXACT [PomBase:mah]
synonym: "complete but unequal mitotic sister chromatid segregation" RELATED [PomBase:mah]
synonym: "complete but unequal mitotic sister chromatid separation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000670 ! abnormal mitotic chromosome separation
created_by: midori
creation_date: 2012-07-19T17:05:51Z

[Term]
id: FYPO:0001271
name: incomplete, unequal mitotic sister chromatid separation
def: "A cellular process phenotype in which mitotic sister chromatid separation stops before completing separation of chromosomes; some, but not all, DNA may be moved towards the ends of an elongated mitotic spindle. Chromosomes do not segregate into two equal masses." [PMID:22711988, PomBase:mah]
synonym: "incomplete, unequal mitotic chromosome separation" EXACT [PomBase:mah]
synonym: "incomplete, unequal mitotic sister chromatid segregation" RELATED [PomBase:mah]
synonym: "incomplete, unequal mitotic sister chromatid separation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000670 ! abnormal mitotic chromosome separation
created_by: midori
creation_date: 2012-07-19T17:09:10Z

[Term]
id: FYPO:0001272
name: incomplete, unequal mitotic sister chromatid separation, with smeared DNA
def: "A cellular process phenotype in which mitotic sister chromatid separation stops before completing separation of chromosomes, and DNA becomes spread into an indistinct mass along much of the length of the mitotic spindle." [PMID:22711988, PomBase:mah]
synonym: "incomplete, unequal mitotic sister chromatid segregation, with smeared DNA" RELATED [PomBase:mah]
synonym: "incomplete, unequal mitotic sister chromatid separation, with smeared DNA during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001271 ! incomplete, unequal mitotic sister chromatid separation
created_by: midori
creation_date: 2012-07-19T17:15:07Z

[Term]
id: FYPO:0001273
name: incomplete, unequal mitotic sister chromatid separation, with unseparated DNA
def: "A cellular process phenotype in which mitotic sister chromatid separation stops before completing separation of chromosomes, and DNA remains in a single mass at or near the midpoint of the mitotic spindle." [PMID:22711988, PomBase:mah]
synonym: "incomplete, unequal mitotic sister chromatid segregation, with unseparated DNA" RELATED [PomBase:mah]
synonym: "incomplete, unequal mitotic sister chromatid separation, with unseparated DNA during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001271 ! incomplete, unequal mitotic sister chromatid separation
created_by: midori
creation_date: 2012-07-19T17:15:33Z

[Term]
id: FYPO:0001274
name: decreased protein level during cellular response to hypoxia
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to hypoxia is lower than normal. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "decreased protein accumulation during cellular response to hypoxia" RELATED [PomBase:mah]
synonym: "decreased protein level during cellular response to hyperoxic stress" EXACT [GO:0071456]
synonym: "decreased protein level during cellular response to hypoxia during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased protein level during cellular response to increased oxygen tension" EXACT [GO:0071456]
synonym: "reduced protein level during cellular response to hypoxia" EXACT [PomBase:mah]
is_a: FYPO:0001324 ! decreased protein level during vegetative growth
is_a: FYPO:0001549 ! altered protein level during cellular response to hypoxia
created_by: midori
creation_date: 2012-07-19T17:21:36Z

[Term]
id: FYPO:0001275
name: decreased protein binding during cellular response to hypoxia
def: "A molecular function phenotype in which the binding of one protein to another occurs to a lower extent than normal during a cellular response to hypoxia." [PomBase:mah]
comment: This term can be used for any protein-protein interaction that is affected by a mutation, whether or not the mutated gene product is one of the interacting proteins. We recommend noting which proteins were used in the assay when annotating to this term.
synonym: "decreased protein binding in response to hypoxia" RELATED [PomBase:al]
synonym: "decreased protein-protein interaction during cellular response to hypoxia" EXACT [PomBase:mah]
is_a: FYPO:0001645 ! decreased protein binding
created_by: midori
creation_date: 2012-07-19T17:23:30Z

[Term]
id: FYPO:0001276
name: decreased MCM complex assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of MCM complex assembly is decreased." [PomBase:mah]
synonym: "decreased MCM complex assembly during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced MCM complex assembly" EXACT [PomBase:mah]
is_a: FYPO:0000448 ! abnormal MCM complex assembly
created_by: midori
creation_date: 2012-07-20T17:32:31Z

[Term]
id: FYPO:0001277
name: abolished MCM complex assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which MCM complex assembly is abolished." [PomBase:mah]
synonym: "abolished MCM complex assembly during vegetative growth" EXACT [PomBase:mah]
synonym: "MCM complex assembly abolished" EXACT [PomBase:mah]
is_a: FYPO:0000448 ! abnormal MCM complex assembly
created_by: midori
creation_date: 2012-07-20T17:34:14Z

[Term]
id: FYPO:0001278
name: normal MCM complex assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which MCM complex assembly is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal MCM complex assembly during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001215 ! normal protein complex assembly
created_by: midori
creation_date: 2012-07-20T17:36:38Z

[Term]
id: FYPO:0001279
name: increased RNA level during cellular response to oxidative stress
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to oxidative stress is higher than normal. Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "increased mRNA level during cellular response to oxidative stress" NARROW [PomBase:mah]
synonym: "increased RNA accumulation during cellular response to oxidative stress" RELATED [PomBase:mah]
synonym: "increased RNA level during cellular response to DEM" NARROW [PomBase:al]
synonym: "increased RNA level during cellular response to diethyl maleate" NARROW [PomBase:mah]
synonym: "increased RNA level during cellular response to oxidative stress during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000825 ! increased RNA level during vegetative growth
created_by: midori
creation_date: 2012-07-26T10:59:25Z

[Term]
id: FYPO:0001280
name: decreased RNA level during cellular response to oxidative stress
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to oxidative stress is lower than normal. Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "decreased mRNA level during cellular response to oxidative stress" NARROW [PomBase:mah]
synonym: "decreased RNA accumulation during cellular response to oxidative stress" RELATED [PomBase:mah]
synonym: "decreased RNA level during cellular response to DEM" NARROW [PomBase:al]
synonym: "decreased RNA level during cellular response to diethyl maleate" NARROW [PomBase:mah]
synonym: "decreased RNA level during cellular response to oxidative stress during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced RNA level during cellular response to oxidative stress" EXACT [PomBase:mah]
is_a: FYPO:0001117 ! decreased RNA level during vegetative growth
created_by: midori
creation_date: 2012-07-26T11:06:41Z

[Term]
id: FYPO:0001281
name: normal protein phosphorylation during cellular response to hydrogen peroxide
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal during a cellular response to hydrogen peroxide." [PomBase:mah]
comment: When using this term, it is recommended to note the specific protein(s) affected.
synonym: "normal protein phosphorylation during cellular response to H2O2" EXACT [PomBase:mah]
synonym: "normal protein phosphorylation during cellular response to hydrogen peroxide during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000776 ! normal protein phosphorylation
created_by: midori
creation_date: 2012-07-26T11:15:18Z

[Term]
id: FYPO:0001282
name: abnormal chromatin organization during nitrogen starvation
def: "A cellular process phenotype in which any process of chromatin organization is abnormal when the cell is subject to nitrogen starvation. Chromatin organization results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin." [GO:0006325, PomBase:mah]
synonym: "abnormal chromatin organisation during nitrogen starvation" EXACT [PomBase:mah]
is_a: FYPO:0000642 ! abnormal chromatin organization
created_by: midori
creation_date: 2012-07-26T11:50:10Z

[Term]
id: FYPO:0001283
name: decreased protein level during cellular response to nitrogen starvation
def: "A cell phenotype in which the amount of protein measured in a cell during a cellular response to nitrogen starvation is lower than normal. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "decreased protein accumulation during cellular response to nitrogen starvation" RELATED [PomBase:mah]
synonym: "reduced protein level during cellular response to nitrogen starvation" EXACT [PomBase:mah]
is_a: FYPO:0000835 ! decreased protein level
created_by: midori
creation_date: 2012-07-26T11:59:16Z

[Term]
id: FYPO:0001284
name: phosphatidylserine absent from cell
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylserine measured in a cell is too low to detect." [PomBase:mah]
synonym: "phosphatidyl-L-serine absent from cell" EXACT [CHEBI:18303]
synonym: "phosphatidylserine absent from cell during vegetative growth" EXACT [PomBase:mah]
synonym: "PS absent from cell" EXACT [PomBase:mah]
is_a: FYPO:0001208 ! substance absent from cell during vegetative growth
is_a: FYPO:0001289 ! decreased phospholipid level
created_by: midori
creation_date: 2012-07-26T12:20:15Z

[Term]
id: FYPO:0001285
name: decreased cellular phosphatidylethanolamine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylethanolamine measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular PE level" EXACT [PomBase:mah]
synonym: "decreased cellular phosphatidylethanolamine level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased phosphatidylethanolamine accumulation" RELATED [PomBase:al]
synonym: "reduced cellular phosphatidylethanolamine level" EXACT [PomBase:mah]
is_a: FYPO:0001289 ! decreased phospholipid level
created_by: midori
creation_date: 2012-07-26T12:25:19Z

[Term]
id: FYPO:0001286
name: increased cellular phosphoinositide level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a phosphoinositide measured in a cell is higher than normal. A phosphoinositide is any phosphatidylinositol that is phosphorylated at one or more of the hydroxy groups of inositol." [PomBase:mah]
synonym: "increased cellular phosphoinositide level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased cellular PI level" RELATED [PomBase:al]
synonym: "increased PI accumulation" RELATED [PomBase:al]
is_a: FYPO:0001288 ! increased phospholipid level
is_a: FYPO:0001290 ! altered cellular phosphoinositide level
created_by: midori
creation_date: 2012-07-26T12:26:35Z

[Term]
id: FYPO:0001287
name: altered phospholipid level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a phospholipid measured in a cell differs from normal. A phospholipid is any lipid containing phosphoric acid as a mono- or di-ester." [CHEBI:16247, PomBase:mah]
synonym: "abnormal phospholipid level" EXACT [PomBase:mah]
synonym: "altered cellular phospholipid level" EXACT [PomBase:mah]
synonym: "altered phospholipid level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001323 ! altered level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-07-26T13:16:37Z

[Term]
id: FYPO:0001288
name: increased phospholipid level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a phospholipid measured in a cell is higher than normal. A phospholipid is any lipid containing phosphoric acid as a mono- or di-ester." [CHEBI:16247, PomBase:mah]
synonym: "increased cellular phospholipid level" EXACT [PomBase:mah]
synonym: "increased phospholipid accumulation" RELATED [PomBase:mah]
synonym: "increased phospholipid level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001287 ! altered phospholipid level
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-07-26T13:21:43Z

[Term]
id: FYPO:0001289
name: decreased phospholipid level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a phospholipid measured in a cell is lower than normal. A phospholipid is any lipid containing phosphoric acid as a mono- or di-ester." [CHEBI:16247, PomBase:mah]
synonym: "decreased cellular phospholipid level" EXACT [PomBase:mah]
synonym: "decreased phospholipid accumulation" RELATED [PomBase:mah]
synonym: "decreased phospholipid level during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced phospholipid level" EXACT [PomBase:mah]
is_a: FYPO:0001287 ! altered phospholipid level
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-07-26T13:22:15Z

[Term]
id: FYPO:0001290
name: altered cellular phosphoinositide level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a phosphoinositide measured in a cell differs from normal. A phosphoinositide is any phosphatidylinositol that is phosphorylated at one or more of the hydroxy groups of inositol." [PomBase:mah]
synonym: "abnormal cellular phosphoinositide level" EXACT [PomBase:mah]
synonym: "altered cellular phosphoinositide level during vegetative growth" EXACT [PomBase:mah]
synonym: "altered cellular PI level" RELATED [PomBase:al]
synonym: "altered PI accumulation" RELATED [PomBase:al]
is_a: FYPO:0001287 ! altered phospholipid level
created_by: midori
creation_date: 2012-07-26T13:23:26Z

[Term]
id: FYPO:0001291
name: abnormal CDP-diacylglycerol-serine O-phosphatidyltransferase activity
def: "A molecular function phenotype in which the observed rate of CDP-diacylglycerol-serine O-phosphatidyltransferase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-07-26T13:33:37Z

[Term]
id: FYPO:0001292
name: decreased CDP-diacylglycerol-serine O-phosphatidyltransferase activity
def: "A molecular function phenotype in which the observed rate of CDP-diacylglycerol-serine O-phosphatidyltransferase activity is decreased." [PomBase:mah]
synonym: "reduced CDP-diacylglycerol-serine O-phosphatidyltransferase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0001291 ! abnormal CDP-diacylglycerol-serine O-phosphatidyltransferase activity
created_by: midori
creation_date: 2012-07-26T13:34:04Z

[Term]
id: FYPO:0001293
name: normal cell wall biogenesis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell wall biogenesis is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cell wall biogenesis during vegetative growth" EXACT [PomBase:mah]
synonym: "normal fungal-type cell wall biogenesis" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2012-07-26T13:49:47Z

[Term]
id: FYPO:0001294
name: normal actin cortical patch localization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch localization is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal actin cortical patch localisation" EXACT [PomBase:mah]
synonym: "normal actin cortical patch localization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001337 ! localization phenotype during vegetative growth
created_by: midori
creation_date: 2012-07-26T14:12:03Z

[Term]
id: FYPO:0001295
name: normal palmitoyl-CoA ligase activity
def: "A molecular function phenotype in which the observed rate of palmitoyl-CoA ligase activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal palmitoyl-CoA synthetase activity" EXACT [GO:0090433, PomBase:mah]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2012-07-26T14:25:18Z

[Term]
id: FYPO:0001296
name: normal oleoyl-CoA ligase activity
def: "A molecular function phenotype in which the observed rate of oleoyl-CoA ligase activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal oleoyl-CoA synthetase activity" EXACT [GO:0090434, PomBase:mah]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2012-07-26T14:31:43Z

[Term]
id: FYPO:0001297
name: abnormal palmitoyl-CoA ligase activity
def: "A molecular function phenotype in which the observed rate of palmitoyl-CoA ligase activity is abnormal." [PomBase:mah]
synonym: "abnormal palmitoyl-CoA synthetase activity" EXACT [GO:0090433, PomBase:mah]
is_a: FYPO:0001305 ! abnormal long-chain fatty acid-CoA ligase activity
created_by: midori
creation_date: 2012-07-26T14:33:36Z

[Term]
id: FYPO:0001298
name: decreased palmitoyl-CoA ligase activity
def: "A molecular function phenotype in which the observed rate of palmitoyl-CoA ligase activity is decreased." [PomBase:mah]
synonym: "decreased palmitoyl-CoA synthetase activity" EXACT [GO:0090433, PomBase:mah]
synonym: "reduced palmitoyl-CoA ligase activity" EXACT [PomBase:al]
is_a: FYPO:0001297 ! abnormal palmitoyl-CoA ligase activity
is_a: FYPO:0001307 ! decreased long-chain fatty acid-CoA ligase activity
created_by: midori
creation_date: 2012-07-26T14:34:05Z

[Term]
id: FYPO:0001299
name: abolished palmitoyl-CoA ligase activity
def: "A molecular function phenotype in which palmitoyl-CoA ligase activity is absent." [PomBase:mah]
synonym: "abolished palmitoyl-CoA synthetase activity" EXACT [GO:0090433, PomBase:mah]
synonym: "palmitoyl-CoA ligase activity abolished" EXACT [PomBase:mah]
is_a: FYPO:0001297 ! abnormal palmitoyl-CoA ligase activity
is_a: FYPO:0001306 ! abolished long-chain fatty acid-CoA ligase activity
created_by: midori
creation_date: 2012-07-26T14:34:26Z

[Term]
id: FYPO:0001300
name: abnormal oleoyl-CoA ligase activity
def: "A molecular function phenotype in which the observed rate of oleoyl-CoA ligase activity is abnormal." [PomBase:mah]
synonym: "abnormal oleoyl-CoA synthetase activity" EXACT [GO:0090434, PomBase:mah]
is_a: FYPO:0001305 ! abnormal long-chain fatty acid-CoA ligase activity
created_by: midori
creation_date: 2012-07-26T14:38:21Z

[Term]
id: FYPO:0001301
name: abolished oleoyl-CoA ligase activity
def: "A molecular function phenotype in which oleoyl-CoA ligase activity is absent." [PomBase:mah]
synonym: "abolished oleoyl-CoA synthetase activity" EXACT [GO:0090434, PomBase:mah]
synonym: "oleoyl-CoA ligase activity abolished" EXACT [PomBase:mah]
is_a: FYPO:0001300 ! abnormal oleoyl-CoA ligase activity
is_a: FYPO:0001306 ! abolished long-chain fatty acid-CoA ligase activity
created_by: midori
creation_date: 2012-07-26T14:38:28Z

[Term]
id: FYPO:0001302
name: decreased oleoyl-CoA ligase activity
def: "A molecular function phenotype in which the observed rate of oleoyl-CoA ligase activity is decreased." [PomBase:mah]
synonym: "decreased oleoyl-CoA synthetase activity" RELATED [GO:0090434, PomBase:mah]
synonym: "reduced oleoyl-CoA ligase activity" EXACT [PomBase:al]
is_a: FYPO:0001300 ! abnormal oleoyl-CoA ligase activity
is_a: FYPO:0001307 ! decreased long-chain fatty acid-CoA ligase activity
created_by: midori
creation_date: 2012-07-26T14:38:38Z

[Term]
id: FYPO:0001303
name: abnormal myristoyl-CoA ligase activity
def: "A molecular function phenotype in which the observed rate of myristoyl-CoA ligase activity is abnormal." [PomBase:mah]
synonym: "abnormal myristoyl-CoA synthetase activity" EXACT [GO:0090432, PomBase:mah]
is_a: FYPO:0001305 ! abnormal long-chain fatty acid-CoA ligase activity
created_by: midori
creation_date: 2012-07-26T14:40:40Z

[Term]
id: FYPO:0001304
name: decreased myristoyl-CoA ligase activity
def: "A molecular function phenotype in which the observed rate of myristoyl-CoA ligase activity is decreased." [PomBase:mah]
synonym: "decreased myristoyl-CoA synthetase activity" RELATED [GO:0090432, PomBase:mah]
synonym: "reduced myristoyl-CoA ligase activity" EXACT [PomBase:al]
is_a: FYPO:0001303 ! abnormal myristoyl-CoA ligase activity
is_a: FYPO:0001307 ! decreased long-chain fatty acid-CoA ligase activity
created_by: midori
creation_date: 2012-07-26T14:40:44Z

[Term]
id: FYPO:0001305
name: abnormal long-chain fatty acid-CoA ligase activity
def: "A molecular function phenotype in which the observed rate of any long-chain fatty acid-CoA ligase activity is abnormal." [PomBase:mah]
synonym: "abnormal lcfa-ligase activity" EXACT [PomBase:al]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-07-26T14:44:02Z

[Term]
id: FYPO:0001306
name: abolished long-chain fatty acid-CoA ligase activity
def: "A molecular function phenotype in which long-chain fatty acid-CoA ligase activity is absent." [PomBase:mah]
synonym: "abolished lcfa-ligase activity" EXACT [PomBase:al]
synonym: "long-chain fatty acid-CoA ligase activity abolished" EXACT [PomBase:mah]
is_a: FYPO:0000664 ! abolished catalytic activity
is_a: FYPO:0001305 ! abnormal long-chain fatty acid-CoA ligase activity
created_by: midori
creation_date: 2012-07-26T14:45:16Z

[Term]
id: FYPO:0001307
name: decreased long-chain fatty acid-CoA ligase activity
def: "A molecular function phenotype in which the observed rate of long-chain fatty acid-CoA ligase activity is decreased." [PomBase:mah]
synonym: "decreased lcfa-ligase activity" EXACT [PomBase:al]
synonym: "reduced long-chain fatty acid-CoA ligase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0001305 ! abnormal long-chain fatty acid-CoA ligase activity
created_by: midori
creation_date: 2012-07-26T14:45:21Z

[Term]
id: FYPO:0001308
name: increased long-chain fatty acid-CoA ligase activity
def: "A molecular function phenotype in which the observed rate of long-chain fatty acid-CoA ligase activity is increased." [PomBase:mah]
synonym: "increased lcfa-ligase activity" EXACT [PomBase:mah]
is_a: FYPO:0000662 ! increased catalytic activity
is_a: FYPO:0001305 ! abnormal long-chain fatty acid-CoA ligase activity
created_by: midori
creation_date: 2012-07-26T14:45:26Z

[Term]
id: FYPO:0001309
name: increased viability in stationary phase
def: "A cell population phenotype in which a larger than normal proportion of the population remains viable after entering stationary phase." [PomBase:mah]
is_a: FYPO:0001985 ! abnormal phenotype
is_a: FYPO:0002057 ! cell population viability
created_by: midori
creation_date: 2012-07-26T14:58:27Z

[Term]
id: FYPO:0001310
name: normal viability in stationary phase
def: "A cell population phenotype in which a normal proportion of the population remains viable after entering stationary phase." [PomBase:mah]
is_a: FYPO:0000257 ! normal phenotype
is_a: FYPO:0002057 ! cell population viability
created_by: midori
creation_date: 2012-07-26T14:59:20Z

[Term]
id: FYPO:0001311
name: decreased plasmid loss
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which plasmids are lost at a lower frequency than normal. Plasmid loss occurs when one or both daughter cells do not inherit copies of a plasmid from the mother cell, and may result from failure of plasmid replication or segregation." [PomBase:mah]
synonym: "decreased plasmid loss during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2012-07-26T15:11:43Z

[Term]
id: FYPO:0001312
name: normal vegetative phenotype
def: "A normal phenotype that is observed when cells are in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "fission yeast normal vegetative phenotype" EXACT [PomBase:mah]
is_a: FYPO:0000257 ! normal phenotype
created_by: midori
creation_date: 2012-08-01T11:18:45Z

[Term]
id: FYPO:0001313
name: normal subcellular structure during vegetative growth
def: "A cell phenotype in which the amount, distribution, or morphology of a cell part is normal when the cell is in the vegetative growth phase of the life cycle." [PomBase:mah]
is_a: FYPO:0001233 ! normal subcellular structure
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T12:32:26Z

[Term]
id: FYPO:0001314
name: normal cell cortex morphology during vegetative growth
def: "A cellular structure phenotype in which the morphology of all or part of the cell cortex is normal when the cell is in the vegetative growth phase of the life cycle. The cell cortex is the region of a cell that lies just beneath the plasma membrane." [GO:0005938, PomBase:mah]
is_a: FYPO:0001231 ! normal cell cortex morphology
is_a: FYPO:0001313 ! normal subcellular structure during vegetative growth
created_by: midori
creation_date: 2012-08-01T12:33:02Z

[Term]
id: FYPO:0001315
name: normal cell morphology during vegetative growth
def: "A cell phenotype characterized by normal cell morphology when the cell is in the vegetative growth phase of the life cycle." [PomBase:mah]
is_a: FYPO:0000672 ! normal cell morphology
is_a: FYPO:0001312 ! normal vegetative phenotype
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T13:09:00Z

[Term]
id: FYPO:0001316
name: normal level of substance in cell during vegetative growth
def: "A cell phenotype in which the amount of a specific substance measured in a cell is normal when the cell is in the vegetative growth phase of the life cycle." [PomBase:mah]
is_a: FYPO:0001076 ! normal level of substance in cell
is_a: FYPO:0001312 ! normal vegetative phenotype
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2012-08-01T13:14:57Z

[Term]
id: FYPO:0001317
name: normal RNA level during vegetative growth
def: "A cell phenotype in which the amount of RNA measured in a cell is normal when the cell is in the vegetative growth phase of the life cycle. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "normal cellular RNA level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal mRNA level during vegetative growth" NARROW [PomBase:mah]
is_a: FYPO:0000840 ! normal RNA level
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-08-01T13:15:43Z

[Term]
id: FYPO:0001318
name: normal cellular response to chemical stimulus during vegetative growth
def: "A cellular response phenotype in which the cellular response to a chemical stimulus is normal in the vegetative growth phase of the life cycle." [PomBase:mah]
is_a: FYPO:0000953 ! normal cellular response to chemical stimulus
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001342 ! cellular response phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T13:37:42Z

[Term]
id: FYPO:0001319
name: normal cellular process during vegetative growth
def: "A phenotype in which a specific cellular process is normal in the vegetative growth phase of the life cycle." [PomBase:mah]
is_a: FYPO:0000627 ! normal cellular process
is_a: FYPO:0001312 ! normal vegetative phenotype
is_a: FYPO:0001331 ! cellular process phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T13:42:47Z

[Term]
id: FYPO:0001320
name: vegetative cell phenotype
def: "A phenotype that is observed at the level of an individual cell, when the cell is in the vegetative growth phase of the cell cycle." [PomBase:mah]
synonym: "cell phenotype during vegetative growth" EXACT [PomBase:mah]
synonym: "fission yeast vegetative cell phenotype" EXACT [PomBase:mah]
synonym: "vegetative cell phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000002 ! cell phenotype
created_by: midori
creation_date: 2012-08-01T13:52:18Z

[Term]
id: FYPO:0001321
name: cellular structure phenotype during vegetative growth
def: "A phenotype that affects the structure of a cell or a cellular component in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "fission yeast cellular structure phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000136 ! cellular structure phenotype
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2012-08-01T14:44:55Z

[Term]
id: FYPO:0001322
name: abnormal subcellular structure during vegetative growth
def: "A cellular structure phenotype in which the amount, distribution, or morphology of a cell part is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
is_a: FYPO:0000287 ! abnormal subcellular structure
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T14:46:27Z

[Term]
id: FYPO:0001323
name: altered level of substance in cell during vegetative growth
def: "A cell phenotype in which the amount of a specific substance measured in a cell differs from normal when the cell is in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "abnormal level of substance in cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000989 ! altered level of substance in cell
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2012-08-01T14:57:41Z

[Term]
id: FYPO:0001324
name: decreased protein level during vegetative growth
def: "A cell phenotype in which the amount of protein measured in a cell is lower than normal when the cell is in the vegetative growth phase of the life cycle. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "decreased protein accumulation during vegetative growth" RELATED [PomBase:mah]
synonym: "reduced protein level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000835 ! decreased protein level
is_a: FYPO:0001325 ! altered protein level during vegetative growth
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-08-01T15:37:56Z

[Term]
id: FYPO:0001325
name: altered protein level during vegetative growth
def: "A cell phenotype in which the amount of protein measured in a cell differs from normal when the cell is in the vegetative growth phase of the life cycle. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "abnormal protein level during vegetative growth" EXACT [PomBase:mah]
synonym: "altered cellular protein level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000834 ! altered protein level
is_a: FYPO:0001323 ! altered level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-08-01T15:11:16Z

[Term]
id: FYPO:0001326
name: altered RNA level during vegetative growth
def: "A cell phenotype in which the amount of RNA measured in a cell differs from normal when the cell is in the vegetative growth phase of the life cycle. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "abnormal RNA level during vegetative growth" EXACT [PomBase:mah]
synonym: "altered cellular mRNA level during vegetative growth" NARROW [PomBase:vw]
synonym: "altered cellular RNA level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000824 ! altered RNA level
is_a: FYPO:0001323 ! altered level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-08-01T15:11:33Z

[Term]
id: FYPO:0001327
name: increased protein level during vegetative growth
def: "A cell phenotype in which the amount of protein measured in a cell is higher than normal when the cell is in the vegetative growth phase of the life cycle. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "increased protein accumulation during vegetative growth" RELATED [PomBase:mah]
is_a: FYPO:0000836 ! increased protein level
is_a: FYPO:0001325 ! altered protein level during vegetative growth
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-08-01T15:43:39Z

[Term]
id: FYPO:0001328
name: abnormal cytoskeleton organization during vegetative growth
def: "A cellular process phenotype in which cytoskeleton organization is abnormal in the vegetative growth phase of the cell cycle." [GO:0007010, PomBase:mah]
comment: Consider annotating to 'abnormal cytoskeleton morphology' (FYPO:0000352), but note that an abnormal cytoskeleton organization process may, but does not necessarily, result in abnormal cytoskeleton morphology.
synonym: "abnormal cytoskeleton organisation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000802 ! abnormal cytoskeleton organization
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2012-08-02T17:17:46Z

[Term]
id: FYPO:0001329
name: decreased level of substance in cell during vegetative growth
def: "A cell phenotype in which the amount of a specific substance measured in a cell is lower than normal when the cell is in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "reduced level of substance in cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000991 ! decreased level of substance in cell
is_a: FYPO:0001323 ! altered level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-08-01T16:23:22Z

[Term]
id: FYPO:0001330
name: increased level of substance in cell during vegetative growth
def: "A cell phenotype in which the amount of a specific substance measured in a cell is higher than normal when the cell is in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "increased accumulation of substance in cell during vegetative growth" RELATED [PomBase:mah]
is_a: FYPO:0000990 ! increased level of substance in cell
is_a: FYPO:0001323 ! altered level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-08-01T16:24:14Z

[Term]
id: FYPO:0001331
name: cellular process phenotype during vegetative growth
def: "A phenotype that affects a cellular process in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "fission yeast cellular process phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000114 ! cellular process phenotype
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2012-08-01T16:27:01Z

[Term]
id: FYPO:0001332
name: abnormal regulation of translation in response to stress during vegetative growth
def: "A gene expression phenotype in which regulation of translation in response to stress is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "protein synthesis after stress, defective during vegetative growth" RELATED [PomBase:mah]
is_a: FYPO:0000263 ! abnormal regulation of translation in response to stress
is_a: FYPO:0001333 ! gene expression regulation phenotype during vegetative growth
is_a: FYPO:0001341 ! abnormal cellular response to stress during vegetative growth
created_by: midori
creation_date: 2012-08-01T16:31:58Z

[Term]
id: FYPO:0001333
name: gene expression regulation phenotype during vegetative growth
def: "A regulation phenotype that affects the regulation of gene expression in the vegetative growth phase of the life cycle." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast gene expression regulation phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000288 ! gene expression regulation phenotype
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T16:33:19Z

[Term]
id: FYPO:0001334
name: regulation phenotype during vegetative growth
def: "A cellular process phenotype that affects the regulation of a molecular function, biological process, or biological quality in the vegetative growth phase of the life cycle." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
synonym: "fission yeast regulation phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000145 ! regulation phenotype
is_a: FYPO:0001331 ! cellular process phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T16:33:52Z

[Term]
id: FYPO:0001335
name: transcription regulation phenotype during vegetative growth
def: "A gene expression phenotype that affects the regulation of DNA-dependent transcription in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "fission yeast transcription regulation phenotype during vegetative growth" EXACT [PomBase:mah]
synonym: "gene-specific transcription regulation phenotype during vegetative growth" RELATED [GO:0006355, PomBase:mah]
synonym: "transcriptional control phenotype during vegetative growth" BROAD [GO:0006355, PomBase:mah]
is_a: FYPO:0000143 ! transcription regulation phenotype
is_a: FYPO:0001333 ! gene expression regulation phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T16:36:22Z

[Term]
id: FYPO:0001336
name: transport phenotype during vegetative growth
def: "A cell process phenotype that affects a transport process in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "fission yeast transport phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000149 ! transport phenotype
is_a: FYPO:0001337 ! localization phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T16:55:04Z

[Term]
id: FYPO:0001337
name: localization phenotype during vegetative growth
def: "A cell phenotype that affects the localization of a structure or substance in a cell in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "fission yeast localization phenotype during vegetative growth" EXACT [PomBase:mah]
synonym: "localisation phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000138 ! localization phenotype
is_a: FYPO:0001331 ! cellular process phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T16:55:18Z

[Term]
id: FYPO:0001338
name: abnormal nucleus localization during vegetative growth
def: "A cellular process phenotype in which nucleus localization is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "abnormal nuclear localization during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal nucleus localisation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000517 ! abnormal nucleus localization
is_a: FYPO:0001337 ! localization phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:07:26Z

[Term]
id: FYPO:0001339
name: abnormal cellular response to starvation during vegetative growth
def: "A stress response phenotype in which the response to starvation for one or more nutrients is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
is_a: FYPO:0000713 ! abnormal cellular response to starvation
is_a: FYPO:0001341 ! abnormal cellular response to stress during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:15:31Z

[Term]
id: FYPO:0001340
name: abnormal cellular response to oxidative stress during vegetative growth
def: "A stress response phenotype in which a cellular response to oxidative stress is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
is_a: FYPO:0000180 ! abnormal cellular response to oxidative stress
is_a: FYPO:0001341 ! abnormal cellular response to stress during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:18:23Z

[Term]
id: FYPO:0001341
name: abnormal cellular response to stress during vegetative growth
def: "A cellular response phenotype in which a cellular response to stress is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
is_a: FYPO:0000162 ! abnormal cellular response to stress
is_a: FYPO:0001342 ! cellular response phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:19:19Z

[Term]
id: FYPO:0001342
name: cellular response phenotype during vegetative growth
def: "A cellular process phenotype that affects a response to a stimulus in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "fission yeast cellular response phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000298 ! cellular response phenotype
is_a: FYPO:0001331 ! cellular process phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:32:10Z

[Term]
id: FYPO:0001343
name: abnormal DNA replication during vegetative growth
def: "A cellular process phenotype in which DNA replication is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "abnormal DNA-dependent DNA replication during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000217 ! abnormal DNA replication
is_a: FYPO:0001346 ! DNA metabolism phenotype during vegetative growth
is_a: FYPO:0001363 ! abnormal metabolic process during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:33:51Z

[Term]
id: FYPO:0001344
name: abnormal DNA replication initiation during vegetative growth
def: "A cellular process phenotype in which the initiation of DNA replication is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "abnormal DNA-dependent DNA replication initiation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000176 ! abnormal DNA replication initiation
is_a: FYPO:0001343 ! abnormal DNA replication during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:34:25Z

[Term]
id: FYPO:0001345
name: abnormal DNA recombination during vegetative growth
def: "A cellular process phenotype in which DNA recombination is abnormal in the vegetative growth phase of the life cycle. DNA recombination is a process that results in reassortment of genes, producing gene combinations different from those that were present in the parents." [GO:0006310, PomBase:mah]
synonym: "recombination defects during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000063 ! abnormal DNA recombination
is_a: FYPO:0001346 ! DNA metabolism phenotype during vegetative growth
is_a: FYPO:0001363 ! abnormal metabolic process during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:37:10Z

[Term]
id: FYPO:0001346
name: DNA metabolism phenotype during vegetative growth
def: "A cellular process phenotype that affects any DNA metabolic process in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "fission yeast DNA metabolism phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000293 ! DNA metabolism phenotype
is_a: FYPO:0001347 ! nucleic acid metabolism phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:38:00Z

[Term]
id: FYPO:0001347
name: nucleic acid metabolism phenotype during vegetative growth
def: "A cellular process phenotype that affects any nucleic acid metabolic process in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "fission yeast nucleic acid metabolism phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000292 ! nucleic acid metabolism phenotype
is_a: FYPO:0001348 ! cellular metabolism phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:39:21Z

[Term]
id: FYPO:0001348
name: cellular metabolism phenotype during vegetative growth
def: "A cellular process phenotype that affects metabolism in the cell in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "fission yeast cellular metabolism phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000140 ! cellular metabolism phenotype
is_a: FYPO:0001331 ! cellular process phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:40:24Z

[Term]
id: FYPO:0001349
name: abnormal spindle assembly during vegetative growth
def: "A cellular process phenotype in which spindle assembly is abnormal in the vegetative growth phase of the life cycle. Spindle assembly is the aggregation, arrangement and bonding together of a set of components to form the spindle." [GO:0051225, PomBase:mah]
is_a: FYPO:0000119 ! abnormal spindle assembly
is_a: FYPO:0001350 ! abnormal microtubule cytoskeleton organization during vegetative growth
is_a: FYPO:0001354 ! abnormal cellular component assembly during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:43:57Z

[Term]
id: FYPO:0001350
name: abnormal microtubule cytoskeleton organization during vegetative growth
def: "A phenotype that affects the organization of the microtubule cytoskeleton in the vegetative growth phase of the life cycle. Microtubule cytoskeleton organization is a cellular process that results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins." [GO:0000226, PomBase:mah]
comment: Note that an abnormal microtubule cytoskeleton organization process may, but does not necessarily, result in abnormal microtubule cytoskeleton morphology.
synonym: "abnormal microtubule cytoskeleton organisation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal microtubule organisation during vegetative growth" RELATED [PomBase:mah]
synonym: "abnormal microtubule organization during vegetative growth" RELATED [PomBase:mah]
synonym: "microtubule cytoskeleton defects during vegetative growth" EXACT [PomBase:mah]
synonym: "microtubule organization defects during vegetative growth" RELATED [PomBase:mah]
is_a: FYPO:0000054 ! abnormal microtubule cytoskeleton organization
is_a: FYPO:0001328 ! abnormal cytoskeleton organization during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:45:38Z

[Term]
id: FYPO:0001351
name: abnormal membrane organization during vegetative growth
def: "A cellular process phenotype in which cellular membrane organization is abnormal in the vegetative growth phase of the life cycle. Cellular membrane organization results in the assembly, arrangement of constituent parts, or disassembly of a lipid bilayer membrane, such as the plasma membrane or an organelle membrane." [GO:0016044, PomBase:mah]
synonym: "abnormal cellular membrane organization during vegetative growth" EXACT [GO:0016044, PomBase:mah]
synonym: "abnormal membrane organisation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001013 ! abnormal membrane organization
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:51:07Z

[Term]
id: FYPO:0001352
name: abnormal chromatin organization during vegetative growth
def: "A cellular process phenotype in which any process of chromatin organization is abnormal in the vegetative growth phase of the life cycle. Chromatin organization results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin." [GO:0006325, PomBase:mah]
synonym: "abnormal chromatin organisation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000642 ! abnormal chromatin organization
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2012-08-01T17:56:15Z

[Term]
id: FYPO:0001353
name: abnormal cellular component organization during vegetative growth
def: "A cellular process phenotype in which any process of cellular component organization at the cellular level is abnormal in the vegetative growth phase of the life cycle." [GO:0071842, PomBase:mah]
synonym: "abnormal cellular component organisation during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal cellular component organization at cellular level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000335 ! abnormal cellular component organization
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-08-01T18:11:39Z

[Term]
id: FYPO:0001354
name: abnormal cellular component assembly during vegetative growth
def: "A cellular process phenotype in which any process of cellular component assembly at the cellular level is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "abnormal cellular component assembly at cellular level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000336 ! abnormal cellular component assembly
is_a: FYPO:0001353 ! abnormal cellular component organization during vegetative growth
created_by: midori
creation_date: 2012-08-01T18:14:28Z

[Term]
id: FYPO:0001355
name: decreased vegetative cell population growth
def: "A cell population phenotype in which the growth of a population of cells is decreased relative to normal in the vegetative growth phase of the life cycle. Decreased growth may reflect a reduced growth rate (i.e. slower growth), growth that occurs to a lesser extent than normal, or both." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise (e.g. as for 'decreased cell growth on glucose carbon source' FYPO:0001407).
synonym: "aerobic vegetative growth defects" RELATED [PomBase:mah]
synonym: "decreased vegetative aerobic cell population growth" NARROW [PomBase:mah]
synonym: "reduced vegetative aerobic cell population growth" NARROW [PomBase:mah]
synonym: "reduced vegetative growth" BROAD [PomBase:mah]
synonym: "slow vegetative aerobic cell population growth" NARROW [PomBase:mah]
is_a: FYPO:0000046 ! decreased cell population growth
is_a: FYPO:0001356 ! abnormal vegetative cell population growth
created_by: midori
creation_date: 2012-08-01T18:16:46Z

[Term]
id: FYPO:0001356
name: abnormal vegetative cell population growth
def: "A cellular process phenotype in which vegetative cell population growth is abnormal." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "vegetative growth defect" RELATED [PomBase:mah]
is_a: FYPO:0000045 ! abnormal cell population growth
is_a: FYPO:0000628 ! abnormal cellular process
is_a: FYPO:0001358 ! vegetative cell population growth phenotype
created_by: midori
creation_date: 2012-08-01T18:17:46Z

[Term]
id: FYPO:0001357
name: normal vegetative cell population growth
def: "A cell population phenotype in which a population of cells grows normally in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "vegetative growth normal" BROAD [PomBase:mah]
synonym: "vegetative population growth normal" EXACT [PomBase:mah]
is_a: FYPO:0000047 ! normal cell population growth
is_a: FYPO:0000627 ! normal cellular process
is_a: FYPO:0001358 ! vegetative cell population growth phenotype
relationship: has_part FYPO:0001420 ! normal vegetative cell population growth rate
created_by: midori
creation_date: 2012-08-01T18:20:01Z

[Term]
id: FYPO:0001358
name: vegetative cell population growth phenotype
def: "A cell phenotype that affects the rate or extent of cell population growth in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "cell population growth phenotype during vegetative growth" EXACT [PomBase:mah]
synonym: "fission yeast cell population growth phenotype during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000139 ! cell population growth phenotype
is_a: FYPO:0001331 ! cellular process phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-01T18:21:02Z

[Term]
id: FYPO:0001360
name: decreased amino acid import during vegetative growth
def: "A cellular process phenotype in which the import of one or more amino acids into the cell occurs to a lower extent than normal in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "decreased amino acid import into cell during vegetative growth" EXACT [PomBase:al]
synonym: "decreased amino acid uptake during vegetative growth" EXACT [GO:0043090]
synonym: "reduced amino acid import during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001058 ! decreased amino acid import
is_a: FYPO:0001361 ! abnormal amino acid import during vegetative growth
created_by: midori
creation_date: 2012-08-02T14:51:40Z

[Term]
id: FYPO:0001361
name: abnormal amino acid import during vegetative growth
def: "A cellular process phenotype in which the import of one or more amino acids into the cell is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "abnormal amino acid import into cell during vegetative growth" EXACT [PomBase:al]
synonym: "abnormal amino acid uptake during vegetative growth" EXACT [GO:0043090]
is_a: FYPO:0001057 ! abnormal amino acid import
is_a: FYPO:0001336 ! transport phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-08-02T14:52:32Z

[Term]
id: FYPO:0001362
name: abnormal cellular process during vegetative growth
def: "A phenotype in which a specific cellular process is abnormal in the vegetative growth phase of the life cycle." [PomBase:mah]
is_a: FYPO:0000628 ! abnormal cellular process
is_a: FYPO:0001331 ! cellular process phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-02T14:55:51Z

[Term]
id: FYPO:0001363
name: abnormal metabolic process during vegetative growth
def: "A cellular process phenotype in which a cellular metabolic process is abnormal in the vegetative growth phase of the life cycle. A metabolic process is any set of chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances." [GO:0044237, PomBase:mah]
synonym: "abnormal cellular metabolic process during vegetative growth" EXACT [GO:0044237, PomBase:mah]
synonym: "abnormal metabolism during vegetative growth" EXACT [GO:0044237, PomBase:mah]
is_a: FYPO:0000860 ! abnormal metabolic process
is_a: FYPO:0001348 ! cellular metabolism phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-08-02T18:07:32Z

[Term]
id: FYPO:0001364
name: abnormal contractile ring contraction
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which contractile ring contraction is abnormal. Contractile ring contraction is the part of cytokinesis in which the actomyosin contractile ring constricts." [GO:0000916, PomBase:mah]
synonym: "abnormal actomyosin contractile ring contraction" EXACT [GO:0000916, PomBase:mah]
synonym: "abnormal contractile ring constriction" EXACT [PomBase:vw]
synonym: "abnormal contractile ring contraction during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal contractile ring contraction involved in cell cycle cytokinesis" EXACT [PomBase:mah]
is_a: FYPO:0000032 ! abnormal cytokinesis
created_by: midori
creation_date: 2012-08-07T12:39:39Z

[Term]
id: FYPO:0001365
name: decreased rate of contractile ring contraction
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate of contractile ring contraction is decreased. Contractile ring contraction is the part of cytokinesis in which the actomyosin contractile ring constricts." [GO:0000916, PomBase:mah]
synonym: "decreased rate of actomyosin contractile ring contraction" EXACT [GO:0000916, PomBase:mah]
synonym: "decreased rate of contractile ring constriction" EXACT [PomBase:mah]
synonym: "decreased rate of contractile ring contraction during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased rate of contractile ring contraction involved in cell cycle cytokinesis" EXACT [PomBase:mah]
synonym: "reduced rate of contractile ring contraction" EXACT [PomBase:mah]
is_a: FYPO:0000419 ! decreased rate of cytokinesis
is_a: FYPO:0001364 ! abnormal contractile ring contraction
created_by: midori
creation_date: 2012-08-07T12:41:50Z

[Term]
id: FYPO:0001366
name: normal actin cytoskeleton organization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cytoskeleton organization is normal (i.e. indistinguishable from wild type). Actin cytoskeleton organization is the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins." [GO:0030036, PomBase:mah]
synonym: "normal actin cytoskeleton organisation" EXACT [PomBase:mah]
synonym: "normal actin cytoskeleton organization during vegetative growth" EXACT [PomBase:mah]
synonym: "normal actin filament organization" RELATED [PomBase:mah]
is_a: FYPO:0000296 ! actin cytoskeleton organization phenotype
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2012-08-07T12:51:48Z

[Term]
id: FYPO:0001367
name: normal cytokinesis
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cytokinesis is normal (i.e. indistinguishable from wild type). Cytokinesis is part of the cell cycle and results in the division of the cytoplasm of a cell and its separation into two daughter cells." [GO:0033205, PomBase:mah]
synonym: "normal cell cycle cytokinesis" EXACT [PomBase:mah]
synonym: "normal cytokinesis during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
created_by: midori
creation_date: 2012-08-07T12:54:44Z

[Term]
id: FYPO:0001368
name: normal actomyosin contractile ring assembly
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which contractile ring assembly is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal actomyosin contractile ring assembly during vegetative growth" EXACT [PomBase:mah]
synonym: "normal actomyosin contractile ring formation" RELATED [GO:0000915, PomBase:vw]
synonym: "normal contractile ring assembly" EXACT [PomBase:mah]
synonym: "normal cytokinesis, actomyosin contractile ring assembly" EXACT [PomBase:mah]
synonym: "normal cytokinetic ring assembly" RELATED [PomBase:vw]
synonym: "normal cytokinetic ring formation" RELATED [PomBase:vw]
is_a: FYPO:0001366 ! normal actin cytoskeleton organization
is_a: FYPO:0001367 ! normal cytokinesis
is_a: FYPO:0001845 ! normal kinetochore organization
created_by: midori
creation_date: 2012-08-07T12:54:57Z

[Term]
id: FYPO:0001369
name: mislocalized actomyosin contractile ring
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell forms an actomyosin contractile ring in an abnormal location. The normal location is at the midpoint of, and perpendicular to, the long axis of the cell." [PomBase:mah]
comment: Note that the location of the contractile ring is determined by the location of the cell division site, so an abnormality in cell division site determination can be inferred from this phenotype.
synonym: "contractile ring displaced from cell centre" EXACT [PomBase:vw]
synonym: "mislocalised actomyosin contractile ring" EXACT [PomBase:mah]
synonym: "mislocalized actomyosin contractile ring during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000350 ! abnormal actin cytoskeleton morphology
relationship: output_of FYPO:0000033 ! abnormal contractile ring localization
created_by: midori
creation_date: 2012-08-07T13:31:19Z

[Term]
id: FYPO:0001370
name: abnormal protein localization
def: "A cell phenotype that affects the localization of a protein in a cell. A protein may be observed in a place where it is not normally found, absent from a place where it is normally found, or both." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "abnormal cellular protein localisation" EXACT [PomBase:mah]
synonym: "abnormal cellular protein localization" EXACT [PomBase:mah]
synonym: "abnormal protein localisation" EXACT [PomBase:mah]
synonym: "protein/peptide distribution: abnormal" RELATED [SGD:phenotype_annotation]
is_a: FYPO:0000138 ! localization phenotype
is_a: FYPO:0000628 ! abnormal cellular process
created_by: midori
creation_date: 2012-08-07T13:40:05Z

[Term]
id: FYPO:0001371
name: abolished protein localization to medial cortex
def: "A cell phenotype in which the localization of a protein to the medial cortex is abolished." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "protein localisation to medial cortex abolished" EXACT [GO:0071574, PomBase:mah]
synonym: "protein localization to medial cortex abolished" EXACT [PomBase:mah]
synonym: "protein localization to medial ring abolished" EXACT [GO:0031097, GO:0071574]
is_a: FYPO:0001373 ! abnormal protein localization to medial cortex
is_a: FYPO:0001375 ! protein localization abolished
created_by: midori
creation_date: 2012-08-07T13:55:44Z

[Term]
id: FYPO:0001372
name: abnormal protein localization to medial cortex in spores
def: "A cell phenotype in which the localization of a protein to the medial cortex of a spore is abnormal." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found at the medial cortex and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to medial cortex in spores" EXACT [GO:0071574, PomBase:mah]
synonym: "abnormal protein localization to medial ring in spores" EXACT [GO:0031097, GO:0071574]
is_a: FYPO:0001373 ! abnormal protein localization to medial cortex
created_by: midori
creation_date: 2012-08-07T13:49:04Z

[Term]
id: FYPO:0001373
name: abnormal protein localization to medial cortex
def: "A cell phenotype in which the localization of a protein to the medial cortex is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Encompasses both presence of proteins not normally found at the medial cortex and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
subset: qc_do_not_manually_annotate
synonym: "abnormal protein localisation to medial cortex" EXACT [GO:0071574, PomBase:mah]
synonym: "abnormal protein localization to medial ring" EXACT [GO:0031097, GO:0071574]
is_a: FYPO:0001370 ! abnormal protein localization
created_by: midori
creation_date: 2012-08-07T13:49:11Z

[Term]
id: FYPO:0001374
name: protein localization to medial cortex abolished in spores
def: "A cell phenotype in which the localization of a protein to the medial cortex of a spore is abolished." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "protein localisation to medial cortex abolished in spores" EXACT [GO:0071574, PomBase:mah]
synonym: "protein localization to medial ring abolished in spores" EXACT [GO:0031097, GO:0071574]
is_a: FYPO:0001371 ! abolished protein localization to medial cortex
is_a: FYPO:0001372 ! abnormal protein localization to medial cortex in spores
created_by: midori
creation_date: 2012-08-07T13:56:10Z

[Term]
id: FYPO:0001375
name: protein localization abolished
def: "A cell phenotype in which a protein does not localize to, and is therefore absent from, a place where it is normally found." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. If this term is used, we recommend noting which protein(s) were used in the assay.
subset: qc_do_not_manually_annotate
synonym: "abolished protein localization" EXACT [PomBase:mah]
synonym: "protein absent from specific location in cell" RELATED [PomBase:mah]
is_a: FYPO:0001370 ! abnormal protein localization
created_by: midori
creation_date: 2012-08-07T13:56:37Z

[Term]
id: FYPO:0001376
name: normal cellular calcium level during cellular response to salt stress
def: "A cell phenotype in which the amount of calcium ion measured in a cell during a cellular response to salt stress is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular calcium accumulation during cellular response to salt stress" RELATED [PomBase:mah]
synonym: "normal cellular calcium ion level during cellular response to salt stress" EXACT [PomBase:mah]
is_a: FYPO:0001199 ! normal cellular calcium level
created_by: midori
creation_date: 2012-08-07T14:56:53Z

[Term]
id: FYPO:0001377
name: decreased cellular calcium level during cellular response to salt stress
def: "A cell phenotype in which the amount of calcium ion measured in a cell during a cellular response to salt stress is lower than normal." [PomBase:mah]
synonym: "decreased calcium accumulation during cellular response to salt stress" RELATED [PomBase:al]
synonym: "decreased cellular calcium ion level during cellular response to salt stress" EXACT [PomBase:mah]
synonym: "reduced cellular calcium level during cellular response to salt stress" EXACT [PomBase:mah]
is_a: FYPO:0001197 ! decreased cellular calcium level
created_by: midori
creation_date: 2012-08-07T14:58:22Z

[Term]
id: FYPO:0001378
name: increased cellular calcium level during cellular response to salt stress
def: "A cell phenotype in which the amount of calcium ion measured in a cell during a cellular response to salt stress is higher than normal." [PomBase:mah]
synonym: "increased calcium accumulation during cellular response to salt stress" RELATED [PomBase:mah]
synonym: "increased cellular calcium ion level during cellular response to salt stress" EXACT [PomBase:mah]
is_a: FYPO:0001198 ! increased cellular calcium level
created_by: midori
creation_date: 2012-08-07T14:58:54Z

[Term]
id: FYPO:0001379
name: resistance to tacrolimus
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of tacrolimus than normal." [PomBase:mah]
synonym: "resistance to FK506" EXACT [CHEBI:61057, PomBase:mah]
synonym: "resistance to tacrolimus during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to tacrolimus" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-08-07T15:05:20Z

[Term]
id: FYPO:0001380
name: normal nuclear morphology during vegetative growth
def: "A cellular structure phenotype in which the morphology of the nucleus is normal (i.e. indistinguishable from wild type) in the vegetative growth phase of the life cycle." [PomBase:mah]
is_a: FYPO:0001313 ! normal subcellular structure during vegetative growth
is_a: FYPO:0001673 ! normal nuclear morphology
created_by: midori
creation_date: 2012-08-07T15:06:55Z

[Term]
id: FYPO:0001381
name: abnormal protein kinase activity
def: "A molecular function phenotype in which the observed rate of a protein kinase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-08-09T16:05:03Z

[Term]
id: FYPO:0001382
name: decreased protein kinase activity
def: "A molecular function phenotype in which the observed rate of a protein kinase activity is decreased." [PomBase:mah]
synonym: "reduced protein kinase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0001381 ! abnormal protein kinase activity
created_by: midori
creation_date: 2012-08-09T16:06:18Z

[Term]
id: FYPO:0001383
name: normal DNA content
def: "A cell phenotype in which the amount of DNA measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0001076 ! normal level of substance in cell
created_by: midori
creation_date: 2012-08-09T16:33:17Z

[Term]
id: FYPO:0001384
name: abolished protein kinase activity
def: "A molecular function phenotype in which a protein kinase activity is absent." [PomBase:mah]
synonym: "protein kinase activity abolished" EXACT [PomBase:mah]
is_a: FYPO:0000664 ! abolished catalytic activity
is_a: FYPO:0001381 ! abnormal protein kinase activity
created_by: midori
creation_date: 2012-08-10T13:54:04Z

[Term]
id: FYPO:0001385
name: inviable after spore germination, cell cycle arrest with replicated DNA
def: "A phenotype in which a spore germinates to produce a cell that enters the cell cycle but then undergoes cell cycle arrest with replicated DNA, and eventually dies." [PMID:9705504, PomBase:mah]
synonym: "essential; germinating spore, cell cycle arrest with replicated DNA" RELATED [PomBase:mah]
synonym: "inviable following spore germination, cell cycle arrest with replicated DNA" EXACT [PomBase:mah]
synonym: "inviable germinating spore, cell cycle arrest with replicated DNA" RELATED [PomBase:mah]
is_a: FYPO:0001924 ! inviable after spore germination, cell cycle arrest
relationship: has_part FYPO:0000444 ! cell cycle arrest with replicated DNA
created_by: midori
creation_date: 2012-08-10T14:06:51Z

[Term]
id: FYPO:0001386
name: increased haploidization
alt_id: FYPO:0001781
def: "A cell phenotype in which non-sporulating diploid cells become haploid, without undergoing meiosis, at a higher frequency than normal." [PMID:9914167, PomBase:al, PomBase:mah]
comment: Diploid cells may become haploid by chromosome loss, or by undergoing premature mitosis. Chromosome loss may also cause aneuploidy or cell death.
synonym: "unstable diploid" EXACT [PomBase:mah]
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2012-08-10T14:51:16Z

[Term]
id: FYPO:0001387
name: loss of viability at high temperature
def: "A cell population phenotype in which a smaller than normal proportion of the population remains viable when are grown at a temperature higher than standard." [PomBase:mah]
comment: For S. pombe, high temperature usually means above 32 degrees C. Use this term to annotate experiments in which a culture is grown at high temperature, and then the number of cells viable enough to form a colony upon return to standard or low temperature is measured and compared to wild type.
synonym: "loss of viability at restrictive temperature" RELATED [PomBase:mah]
is_a: FYPO:0001985 ! abnormal phenotype
is_a: FYPO:0002057 ! cell population viability
relationship: includes_cells_with_phenotype FYPO:0000713 ! abnormal cellular response to starvation
created_by: midori
creation_date: 2012-08-10T14:55:36Z

[Term]
id: FYPO:0001388
name: decreased protein level in germinating spore
def: "A cell phenotype in which the amount of protein measured in a cell is lower than normal during or just after spore germination. Total protein or a specific protein may be affected." [PomBase:mah]
is_a: FYPO:0000835 ! decreased protein level
created_by: midori
creation_date: 2012-08-10T16:32:24Z

[Term]
id: FYPO:0001389
name: normal nucleus localization
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleus localization is normal." [PomBase:mah]
synonym: "normal nuclear localization" EXACT [PomBase:mah]
synonym: "normal nuclear position" EXACT [PomBase:mah]
synonym: "normal nucleus localisation" EXACT [PomBase:mah]
synonym: "normal nucleus localization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001337 ! localization phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-15T11:46:28Z

[Term]
id: FYPO:0001390
name: misoriented septum
def: "A septation phenotype observed in the vegetative growth phase of the life cycle in which a cell forms a septum that is not perpendicular to the long axis of the cell." [PomBase:mah]
synonym: "abnormal septum orientation" EXACT [PomBase:mah]
synonym: "misoriented septum during vegetative growth" EXACT [PomBase:mah]
synonym: "tilted septum" EXACT [PomBase:al]
is_a: FYPO:0002023 ! abnormal septum morphology
created_by: midori
creation_date: 2012-08-15T13:03:09Z

[Term]
id: FYPO:0001391
name: mislocalized septum, near new end
def: "A septation phenotype observed in the vegetative growth phase of the life cycle in which a cell forms a septum closer to the new end of the cell (when the new end is not yet growing), instead of at the midpoint of the long axis." [PomBase:mah]
synonym: "abnormal septum location, near new end" EXACT [PomBase:mah]
synonym: "abnormal septum location, near non-growing end" NARROW [PomBase:mah]
synonym: "abnormal septum position, near new end" EXACT [PomBase:mah]
synonym: "abnormal septum position, near non-growing end" NARROW [PomBase:mah]
synonym: "asymmetric septum, near new end" EXACT [PomBase:mah]
synonym: "asymmetric septum, near non-growing end" NARROW [PomBase:mah]
synonym: "asymmetrically located septum, near new end" EXACT [PomBase:mah]
synonym: "asymmetrically located septum, near non-growing end" NARROW [PomBase:mah]
synonym: "mislocalised septum, near new end" EXACT [PomBase:mah]
synonym: "mislocalised septum, near non-growing end" NARROW [PomBase:mah]
synonym: "mislocalized septum, near new end, during vegetative growth" EXACT [PomBase:mah]
synonym: "mislocalized septum, near non-growing end" NARROW [PomBase:mah]
synonym: "mislocalized septum, near non-growing end, during vegetative growth" NARROW [PomBase:mah]
is_a: FYPO:0000339 ! mislocalized septum
is_a: FYPO:0001225 ! monoseptate
created_by: midori
creation_date: 2012-08-15T13:08:14Z

[Term]
id: FYPO:0001392
name: abnormal regulation of cell growth
def: "A regulation phenotype in which regulation of vegetative cell growth is abnormal." [PomBase:mah]
synonym: "abnormal regulation of vegetative cell growth" EXACT [PomBase:mah]
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-08-15T13:20:37Z

[Term]
id: FYPO:0001393
name: abnormal activation of monopolar cell growth
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which the activation of monopolar cell growth, i.e. the initiation of growth at the old end of a cell following cell division, is abnormal." [PomBase:mah]
synonym: "abnormal regulation of monopolar vegetative cell growth" EXACT [PomBase:mah]
is_a: FYPO:0001392 ! abnormal regulation of cell growth
created_by: midori
creation_date: 2012-08-15T13:21:29Z

[Term]
id: FYPO:0001394
name: activation of monopolar cell growth at either end
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which the activation of monopolar cell growth may occur at either the new or old end of the cell, instead of exclusively at the old end, following cell division. A population of cells with this phenotype has a 1:1 mix of cells initiating growth at the new end and cells initiating growth at the old end." [PomBase:mah]
synonym: "abnormal initiation of growth from either old or new end following cell division" EXACT [PomBase:al]
synonym: "activation of monopolar vegetative cell growth at either end" EXACT [PomBase:mah]
is_a: FYPO:0001393 ! abnormal activation of monopolar cell growth
created_by: midori
creation_date: 2012-08-15T13:23:28Z

[Term]
id: FYPO:0001395
name: normal activation of monopolar cell growth
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which the activation of monopolar cell growth, i.e. the initiation of growth at the old end of a cell following cell division, is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal activation of monopolar vegetative cell growth" EXACT [PomBase:mah]
synonym: "normal initiation of growth from old end following cell division" EXACT [PomBase:al]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-15T13:35:02Z

[Term]
id: FYPO:0001396
name: normal activation of bipolar cell growth
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which activation of bipolar cell growth is normal; results in normal new end take-off." [PomBase:mah]
synonym: "normal activation of bipolar vegetative cell growth" EXACT [PomBase:mah]
synonym: "normal NETO" EXACT [PomBase:mah]
synonym: "normal new end take off" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-15T13:48:18Z

[Term]
id: FYPO:0001397
name: monopolar actin cortical patch localization to old end
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized to only the old end of a cell following cell division." [PomBase:mah]
synonym: "monopolar actin cortical patch localisation to old end" EXACT [PomBase:mah]
synonym: "monopolar actin cortical patch localization to old end during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001019 ! monopolar actin cortical patch localization
created_by: midori
creation_date: 2012-08-15T14:00:14Z

[Term]
id: FYPO:0001398
name: monopolar actin cortical patch localization to either end
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized to only one end of a cell following cell division; patches may localize to either the old or the new end. A population of cells with this phenotype has a 1:1 mix of cells with actin patches at the old end and cells with patches at the new end." [PomBase:mah]
synonym: "monopolar actin cortical patch localisation to either end" EXACT [PomBase:mah]
synonym: "monopolar actin cortical patch localization to either end during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001019 ! monopolar actin cortical patch localization
created_by: midori
creation_date: 2012-08-15T14:06:42Z

[Term]
id: FYPO:0001399
name: normal mitotic spindle
def: "A cellular structure phenotype in which the structure of the mitotic spindle is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal mitotic spindle during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001313 ! normal subcellular structure during vegetative growth
created_by: midori
creation_date: 2012-08-15T14:29:30Z

[Term]
id: FYPO:0001400
name: normal interphase cytoplasmic microtubules
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the structure of cytoplasmic microtubules is normal (i.e. indistinguishable from wild type) during interphase of the mitotic cell cycle." [PomBase:mah]
synonym: "normal cytoplasmic microtubules during interphase" EXACT [PomBase:mah]
synonym: "normal interphase cytoplasmic microtubules during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001976 ! normal cytoplasmic microtubules
created_by: midori
creation_date: 2012-08-15T14:40:33Z

[Term]
id: FYPO:0001401
name: abnormal protein localization to cell division site
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the site of cell division is abnormal." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found at the cell cortex and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to cell division site" EXACT [PomBase:mah]
synonym: "abnormal protein localization to cell division site during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
created_by: midori
creation_date: 2012-08-15T15:14:14Z

[Term]
id: FYPO:0001402
name: normal protein localization to cell cortex
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell cortex is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "normal protein localisation to cell cortex" EXACT [PomBase:mah]
synonym: "normal protein localization to cell cortex during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000644 ! normal protein localization
created_by: midori
creation_date: 2012-08-15T15:15:59Z

[Term]
id: FYPO:0001403
name: increased cell-substrate adhesion
def: "A cell adhesion phenotype observed in the vegetative growth phase of the life cycle in which cells adhere to a substrate more strongly or to a greater extent than normal." [PomBase:mah]
synonym: "increased cell-substrate adhesion during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000009 ! abnormal cell adhesion during vegetative growth
created_by: midori
creation_date: 2012-08-15T15:36:37Z

[Term]
id: FYPO:0001404
name: irregular colony morphology
def: "A colony morphology phenotype in which the outline of a colony growing on a solid surface is not symmetrical." [PomBase:mah, PomBase:mp]
is_a: FYPO:0000150 ! abnormal colony morphology
created_by: midori
creation_date: 2012-08-15T15:38:42Z

[Term]
id: FYPO:0001405
name: glossy colony morphology
def: "A colony morphology phenotype in which a colony growing on a solid surface has an abnormally glossy surface." [PomBase:mah, PomBase:mp]
synonym: "smooth colony morphology" RELATED [PomBase:vw]
is_a: FYPO:0000150 ! abnormal colony morphology
created_by: midori
creation_date: 2012-08-15T15:40:06Z

[Term]
id: FYPO:0001406
name: increased septum thickness
def: "A septation phenotype observed in the vegetative growth phase of the life cycle in which a cell forms a septum that is thicker than normal." [PomBase:mah]
synonym: "increased septum thickness during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0002023 ! abnormal septum morphology
created_by: midori
creation_date: 2012-08-15T15:43:42Z

[Term]
id: FYPO:0001407
name: decreased cell population growth on glucose carbon source
def: "A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing glucose as the carbon source." [PomBase:mah]
comment: Note that this term encompasses growth under aerobic or semi-anaerobic conditions, whereas most cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "decreased growth on glucose carbon source" BROAD [PomBase:mah]
synonym: "decreased vegetative cell growth on glucose carbon source" EXACT [PomBase:mah]
synonym: "reduced cell growth on glucose carbon source" EXACT [PomBase:mah]
synonym: "slow cell growth on glucose carbon source" NARROW [PomBase:mah]
is_a: FYPO:0001355 ! decreased vegetative cell population growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-08-16T15:53:30Z

[Term]
id: FYPO:0001408
name: sensitive to heat shock
def: "A cell phenotype in which cells show increased sensitivity to heat shock. Heat shock is a form of heat stress in which cells are briefly exposed to a very high temperature." [PomBase:mah]
synonym: "hypersensitive to heat shock" EXACT [PomBase:mah]
is_a: FYPO:0000082 ! sensitive to high temperature
created_by: midori
creation_date: 2012-08-16T16:02:56Z

[Term]
id: FYPO:0001409
name: normal cell population growth on glycerol carbon source
def: "A vegetative cell population growth phenotype in which cells grow normally in a medium containing glycerol as the carbon source." [PomBase:mah]
synonym: "normal growth on glycerol carbon source" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on glycerol carbon source" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-08-16T16:19:09Z

[Term]
id: FYPO:0001410
name: normal cellular sulfide level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of sulfide (S2-), also called acid labile sulfide) measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular acid labile sulfide level" EXACT [PomBase:al]
synonym: "normal cellular sulfide accumulation" RELATED [PomBase:mah]
synonym: "normal cellular sulfide ion level" EXACT [PomBase:mah]
synonym: "normal cellular sulfide level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal cellular sulphide level" EXACT [PomBase:mah]
is_a: FYPO:0001544 ! normal cellular sulfur level
created_by: midori
creation_date: 2012-08-16T16:41:11Z

[Term]
id: FYPO:0001411
name: altered cellular sulfide level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of sulfide (S2-, also called acid labile sulfide) measured in a cell differs from normal." [PomBase:mah]
synonym: "abnormal cellular sulfide accumulation" RELATED [PomBase:mah]
synonym: "abnormal cellular sulfide level" EXACT [PomBase:mah]
synonym: "altered cellular acid labile sulfide level" EXACT [PomBase:al]
synonym: "altered cellular sulfide ion level" EXACT [PomBase:mah]
synonym: "altered cellular sulfide level during vegetative growth" EXACT [PomBase:mah]
synonym: "altered cellular sulphide level" EXACT [PomBase:mah]
is_a: FYPO:0001323 ! altered level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-08-16T16:43:19Z

[Term]
id: FYPO:0001412
name: decreased cellular sulfide level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of sulfide (S2-, also called acid labile sulfide) measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular acid labile sulfide level" EXACT [PomBase:al]
synonym: "decreased cellular sulfide accumulation" RELATED [PomBase:mah]
synonym: "decreased cellular sulfide ion level" EXACT [PomBase:mah]
synonym: "decreased cellular sulfide level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased cellular sulphide level" EXACT [PomBase:mah]
synonym: "reduced cellular sulfide level" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
is_a: FYPO:0001411 ! altered cellular sulfide level
created_by: midori
creation_date: 2012-08-16T16:54:55Z

[Term]
id: FYPO:0001413
name: increased cellular sulfide level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of sulfide (S2-, also called acid labile sulfide) measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular acid labile sulfide level" EXACT [PomBase:al]
synonym: "increased cellular sulfide accumulation" RELATED [PomBase:mah]
synonym: "increased cellular sulfide ion level" EXACT [PomBase:mah]
synonym: "increased cellular sulfide level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased cellular sulphide level" EXACT [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
is_a: FYPO:0001411 ! altered cellular sulfide level
created_by: midori
creation_date: 2012-08-16T16:56:12Z

[Term]
id: FYPO:0001414
name: sensitive to sulfide
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to sulfide (S2-). Cells stop growing (and may die) at a concentration of sulfide ions that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to sulfide" EXACT [PomBase:mah]
synonym: "sensitive to sulfide during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-08-16T17:01:57Z

[Term]
id: FYPO:0001415
name: abnormal sulfide:quinone oxidoreductase activity
def: "A molecular function phenotype in which the observed rate of sulfide:quinone oxidoreductase activity is abnormal." [PomBase:mah]
synonym: "abnormal sulfide-quinone reductase activity" EXACT [GO:0070224]
synonym: "abnormal sulfide:quinone reductase activity" EXACT [PomBase:al]
synonym: "abnormal sulphide:quinone oxidoreductase activity" EXACT [PomBase:mah]
is_a: FYPO:0000689 ! abnormal oxidoreductase activity
created_by: midori
creation_date: 2012-08-16T17:02:48Z

[Term]
id: FYPO:0001416
name: decreased sulfide:quinone oxidoreductase activity
def: "A molecular function phenotype in which the observed rate of sulfide:quinone oxidoreductase activity is decreased." [PomBase:mah]
synonym: "decreased sulfide-quinone reductase activity" EXACT [GO:0070224]
synonym: "decreased sulfide:quinone reductase activity" EXACT [PomBase:al]
synonym: "decreased sulphide:quinone oxidoreductase activity" EXACT [PomBase:mah]
synonym: "reduced sulfide:quinone oxidoreductase activity" EXACT [PomBase:mah]
is_a: FYPO:0000690 ! decreased oxidoreductase activity
is_a: FYPO:0001415 ! abnormal sulfide:quinone oxidoreductase activity
created_by: midori
creation_date: 2012-08-16T17:03:37Z

[Term]
id: FYPO:0001417
name: mislocalized equatorial microtubule organizing center
def: "A cell phenotype in which a cell forms an equatorial microtubule organizing center in an abnormal location. The normal location is at the center of the cell." [PomBase:mah]
synonym: "mislocalised equatorial microtubule organizing center" EXACT [PomBase:mah]
is_a: FYPO:0001418 ! abnormal microtubule cytoskeleton morphology
created_by: midori
creation_date: 2012-08-22T11:59:56Z

[Term]
id: FYPO:0001418
name: abnormal microtubule cytoskeleton morphology
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the morphology of the microtubule cytoskeleton is abnormal." [PomBase:mah]
comment: Note that an abnormal actin cytoskeleton organization process may, but does not necessarily, result in abnormal actin cytoskeleton morphology.
synonym: "abnormal microtubule cytoskeleton morphology during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000352 ! abnormal cytoskeleton morphology
relationship: output_of FYPO:0001350 ! abnormal microtubule cytoskeleton organization during vegetative growth
created_by: midori
creation_date: 2012-08-22T12:00:57Z

[Term]
id: FYPO:0001419
name: normal cell population growth rate
def: "A cell population phenotype in which a population of cells grows at the same rate as wild type." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
synonym: "normal growth rate" BROAD [PomBase:mah]
is_a: FYPO:0002058 ! viable cell population
created_by: midori
creation_date: 2012-08-22T13:05:17Z

[Term]
id: FYPO:0001420
name: normal vegetative cell population growth rate
def: "A cell population phenotype in which a population of cells grow at the same rate as wild type in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "normal growth rate" BROAD [PomBase:mah]
is_a: FYPO:0000114 ! cellular process phenotype
is_a: FYPO:0001419 ! normal cell population growth rate
created_by: midori
creation_date: 2012-08-22T13:07:40Z

[Term]
id: FYPO:0001421
name: abnormal protein processing
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein processing is abnormal. Protein processing is the cleavage of one or more bonds within a protein that leads to the formation of mature, fully functional protein." [GO:0030163, PomBase:mah]
synonym: "abnormal protein cleavage" RELATED [PomBase:vw]
synonym: "abnormal protein maturation by peptide bond cleavage" EXACT [GO:0016485]
synonym: "abnormal protein maturation by peptide bond hydrolysis" EXACT [GO:0016485]
synonym: "abnormal protein processing during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000328 ! abnormal protein metabolic process
created_by: midori
creation_date: 2012-08-22T13:47:53Z

[Term]
id: FYPO:0001422
name: decreased protein processing
def: "A cellular metabolism phenotype observed in the vegetative growth phase of the life cycle in which the observed occurrence of protein processing is decreased." [PMID:19520858, PomBase:mah]
synonym: "decreased protein cleavage" RELATED [PomBase:vw]
synonym: "decreased protein maturation by peptide bond cleavage" EXACT [GO:0016485]
synonym: "decreased protein maturation by peptide bond hydrolysis" EXACT [GO:0016485]
synonym: "decreased protein processing during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased Sre1 cleavage" NARROW [PomBase:mah]
synonym: "reduced protein processing" EXACT [PomBase:mah]
is_a: FYPO:0001421 ! abnormal protein processing
created_by: midori
creation_date: 2012-08-22T14:19:01Z

[Term]
id: FYPO:0001423
name: normal protein targeting to vacuole
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein targeting to the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "normal protein targeting to vacuole during vegetative growth" EXACT [PomBase:mah]
synonym: "normal vacuolar protein sorting" EXACT [PomBase:mah]
is_a: FYPO:0000601 ! normal vacuolar transport
created_by: midori
creation_date: 2012-08-22T14:28:30Z

[Term]
id: FYPO:0001424
name: abolished protein localization to nucleus
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is abolished." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abolished protein localisation to nucleus" EXACT [PomBase:mah]
synonym: "abolished protein localization to nucleus during vegetative growth" EXACT [PomBase:mah]
synonym: "protein localization to nucleus abolished" EXACT [PomBase:mah]
is_a: FYPO:0001129 ! abnormal protein localization to nucleus
is_a: FYPO:0001179 ! protein localization abolished during vegetative growth
created_by: midori
creation_date: 2012-08-22T14:54:11Z

[Term]
id: FYPO:0001425
name: abnormal negative regulation of DNA replication initiation resulting in complete rereplication
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of the initiation of DNA-dependent DNA replication is abnormal, resulting in one or more rounds of rereplication of the entire genome." [PMID:10388806, PomBase:mah]
synonym: "abnormal negative regulation of DNA replication initiation during vegetative growth, resulting in complete rereplication" EXACT [PomBase:mah]
synonym: "abnormal negative regulation of DNA-dependent DNA replication initiation resulting in complete rereplication" EXACT [PomBase:mah]
synonym: "complete DNA re-replication" RELATED [PomBase:mah]
synonym: "complete DNA rereplication" RELATED [PomBase:mah]
is_a: FYPO:0000216 ! abnormal negative regulation of DNA replication initiation
created_by: midori
creation_date: 2012-08-22T15:01:52Z

[Term]
id: FYPO:0001426
name: abnormal negative regulation of DNA replication initiation resulting in partial rereplication
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of the initiation of DNA-dependent DNA replication is abnormal, resulting in rereplication of part of the genome." [PMID:10388806, PomBase:mah]
synonym: "abnormal negative regulation of DNA replication initiation during vegetative growth, resulting in partial rereplication" EXACT [PomBase:mah]
synonym: "abnormal negative regulation of DNA-dependent DNA replication initiation resulting in partial rereplication" EXACT [PomBase:mah]
synonym: "partial DNA re-replication" RELATED [PomBase:mah]
synonym: "partial DNA rereplication" RELATED [PomBase:mah]
is_a: FYPO:0000216 ! abnormal negative regulation of DNA replication initiation
created_by: midori
creation_date: 2012-08-22T15:05:13Z

[Term]
id: FYPO:0001427
name: abnormal negative regulation of DNA replication initiation resulting in slow rereplication
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of the initiation of DNA-dependent DNA replication is abnormal, resulting in a single round of rereplication of the entire genome, which takes place more slowly than normal replication." [PMID:10388806, PomBase:mah]
synonym: "abnormal negative regulation of DNA replication initiation during vegetative growth, resulting in slow rereplication" EXACT [PomBase:mah]
synonym: "abnormal negative regulation of DNA-dependent DNA replication initiation resulting in slow rereplication" EXACT [PomBase:mah]
synonym: "slow DNA re-replication" RELATED [PomBase:mah]
synonym: "slow DNA rereplication" RELATED [PomBase:mah]
is_a: FYPO:0000216 ! abnormal negative regulation of DNA replication initiation
created_by: midori
creation_date: 2012-08-22T15:06:50Z

[Term]
id: FYPO:0001428
name: normal negative regulation of DNA replication initiation
def: "A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of the initiation of DNA-dependent DNA replication is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal negative regulation of DNA replication initiation during vegetative growth" EXACT [PomBase:mah]
synonym: "normal negative regulation of DNA-dependent DNA replication initiation" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001334 ! regulation phenotype during vegetative growth
created_by: midori
creation_date: 2012-08-22T15:08:32Z

[Term]
id: FYPO:0001429
name: swollen elongated cell
def: "A cell morphology phenotype in which a cell has a larger volume, and is longer, than normal." [PMID:10388806, PomBase:mah]
comment: The distinction between this phenotype and dumbbell-shaped cells (FYPO:0000779) is that swollen elongated cells do not have a constriction along the long axis. Swollen elongated cells may have a uniform diameter, or may be swollen only around the nucleus.
is_a: FYPO:0000017 ! elongated cell
is_a: FYPO:0000025 ! swollen cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000025 ! swollen cell
created_by: midori
creation_date: 2012-08-22T15:16:12Z

[Term]
id: FYPO:0001430
name: cell cycle arrest with unreplicated DNA
def: "A cellular process phenotype in which progression through the mitotic cell cycle is arrested before cells have replicated genomic DNA." [PomBase:mah]
comment: Arrest with replicated DNA may occur between mitosis and the beginning of S phase; if only DNA content is measured, the arrest point cannot be determined with greater precision.
synonym: "cell cycle arrest with 1C DNA content" NARROW [PomBase:mah]
synonym: "cell cycle arrest with unreplicated DNA during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000407 ! abnormally arrested cell cycle progression
created_by: midori
creation_date: 2012-08-22T15:27:17Z

[Term]
id: FYPO:0001431
name: resistance to Dio-9
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of the antibiotic Dio-9 than normal." [PomBase:mah]
comment: DIO 9 has CAS registry number 11006-20-5.
synonym: "resistance to DIO 9" EXACT [PomBase:mah]
synonym: "resistance to Dio-9 during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to Dio-9" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-08-23T12:22:31Z

[Term]
id: FYPO:0001432
name: resistance to ethidium bromide
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of ethidium bromide than normal." [PomBase:mah]
synonym: "resistance to EtBr" EXACT [PomBase:mah]
synonym: "resistance to ethidium bromide during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to ethidium bromide" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-08-23T12:45:11Z

[Term]
id: FYPO:0001433
name: resistance to decamethylenediguanidine
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of decamethylenediguanidine than normal." [PomBase:mah]
synonym: "resistance to Anticoman" EXACT [CHEBI:768260, PomBase:mah]
synonym: "resistance to decamethylenediguanidine during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to decamethylenediguanidine" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-08-23T12:49:28Z

[Term]
id: FYPO:0001434
name: resistance to N,N'-(p-xylylidene)bis-aminoguanidine 2HCl
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of N,N'-(p-xylylidene)bis-aminoguanidine 2HCl than normal." [PomBase:mah]
synonym: "resistance to N,N'-(p-xylylidene)bis-aminoguanidine 2HCl during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to N,N'-(p-xylylidene)bis-aminoguanidine 2HCl" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-08-23T12:50:30Z

[Term]
id: FYPO:0001435
name: normal cell population growth on erythromycin
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing erythromycin." [PomBase:mah]
synonym: "normal cell population growth in presence of erythromycin" EXACT [PomBase:mah]
synonym: "normal cellular response to erythromycin" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on erythromycin" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on erythromycin" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-08-23T12:53:50Z

[Term]
id: FYPO:0001436
name: normal cell population growth on trichodermin
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing trichodermin." [PomBase:mah]
synonym: "normal cell population growth in presence of trichodermin" EXACT [PomBase:mah]
synonym: "normal cellular response to trichodermin" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on trichodermin" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on trichodermin" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-08-23T12:55:40Z

[Term]
id: FYPO:0001437
name: normal cell population growth on antimycin A
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing antimycin A." [PomBase:mah]
synonym: "normal cell population growth in presence of antimycin A" EXACT [PomBase:mah]
synonym: "normal cellular response to antimycin A" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on antimycin A" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on antimycin A" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-08-23T12:56:12Z

[Term]
id: FYPO:0001438
name: normal cell population growth on tetracycline
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing tetracycline." [PomBase:mah]
synonym: "normal cell population growth in presence of tetracycline" EXACT [PomBase:mah]
synonym: "normal cellular response to tetracycline" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on tetracycline" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on tetracycline" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-08-23T12:58:33Z

[Term]
id: FYPO:0001439
name: normal cell population growth on chloramphenicol
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing chloramphenicol." [PomBase:mah]
synonym: "normal cell population growth in presence of chloramphenicol" EXACT [PomBase:mah]
synonym: "normal cellular response to chloramphenicol" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on chloramphenicol" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on chloramphenicol" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-08-23T12:59:01Z

[Term]
id: FYPO:0001440
name: abnormal protein complex localization
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein complex is abnormal." [PomBase:mah]
synonym: "abnormal cellular protein complex localization" EXACT [GO:0034629, PomBase:mah]
synonym: "abnormal protein complex localisation" EXACT [GO:0034629, PomBase:mah]
synonym: "abnormal protein complex localization during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
created_by: midori
creation_date: 2012-08-23T14:24:05Z

[Term]
id: FYPO:0001441
name: decreased SAGA complex localization to promoter region
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell cortex is decreased." [PomBase:mah]
synonym: "decreased SAGA complex localisation to promoter region" EXACT [PomBase:mah]
synonym: "decreased SAGA complex localization to promoter region during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased SAGA complex localization to transcription regulatory region" EXACT [GO:0072742, PomBase:mah]
synonym: "decreased SAGA complex recruitment" EXACT [GO:0072742, PomBase:mah]
synonym: "reduced SAGA complex localization to promoter region" EXACT [PomBase:mah]
synonym: "reduced SAGA complex recruitment" EXACT [PomBase:vw]
is_a: FYPO:0001440 ! abnormal protein complex localization
created_by: midori
creation_date: 2012-08-23T14:34:58Z

[Term]
id: FYPO:0001442
name: decreased histone H3-K9 acetylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 9 of histone H3 occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased histone H3 K9 acetylation" EXACT [GO:0043970, PomBase:mah]
synonym: "decreased histone H3-K9 acetylation during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased histone lysine H3 K9 acetylation" EXACT [GO:0043970, PomBase:mah]
synonym: "reduced histone H3-K9 acetylation" EXACT [PomBase:mah]
is_a: FYPO:0000331 ! decreased histone acetylation
is_a: FYPO:0000891 ! abnormal histone H3-K9 acetylation
created_by: midori
creation_date: 2012-08-23T14:45:03Z

[Term]
id: FYPO:0001443
name: abolished transcription
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription does not occur. All genes, or a specific subset of genes, may be affected." [PomBase:mah]
synonym: "abolished transcription during vegetative growth" EXACT [PomBase:mah]
synonym: "transcription abolished" EXACT [PomBase:mah]
is_a: FYPO:0000781 ! decreased transcription
created_by: midori
creation_date: 2012-08-23T14:53:02Z

[Term]
id: FYPO:0001444
name: increased cellular trehalose level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of trehalose measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular trehalose level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased trehalose accumulation" RELATED [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
is_a: FYPO:0001446 ! altered cellular trehalose level
created_by: midori
creation_date: 2012-08-23T15:18:12Z

[Term]
id: FYPO:0001445
name: increased cellular trehalose level during heat shock
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of trehalose measured in a cell is higher than normal when the cell is subject to heat shock." [PomBase:mah]
synonym: "increased cellular trehalose level during vegetative growth and during heat shock" EXACT [PomBase:mah]
synonym: "increased trehalose accumulation during heat shock" RELATED [PomBase:mah]
is_a: FYPO:0001444 ! increased cellular trehalose level
created_by: midori
creation_date: 2012-08-23T15:19:11Z

[Term]
id: FYPO:0001446
name: altered cellular trehalose level
def: "A cell phenotype in which the amount of trehalose measured in a cell differs from normal." [PomBase:mah]
synonym: "abnormal cellular trehalose accumulation" RELATED [PomBase:mah]
synonym: "abnormal cellular trehalose level" EXACT [PomBase:mah]
is_a: FYPO:0000989 ! altered level of substance in cell
created_by: midori
creation_date: 2012-08-23T15:22:37Z

[Term]
id: FYPO:0001447
name: decreased cellular trehalose level
def: "A cell phenotype in which the amount of trehalose measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular trehalose accumulation" RELATED [PomBase:mah]
synonym: "reduced cellular trehalose level" EXACT [PomBase:mah]
is_a: FYPO:0000991 ! decreased level of substance in cell
is_a: FYPO:0001446 ! altered cellular trehalose level
created_by: midori
creation_date: 2012-08-23T15:24:19Z

[Term]
id: FYPO:0001448
name: trehalose absent from cell during heat shock
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of trehalose measured in a cell is too low to detect." [PomBase:mah]
synonym: "absent trehalose" EXACT [PomBase:al]
synonym: "trehalose absent from cell during vegetative growth and during heat shock" EXACT [PomBase:mah]
is_a: FYPO:0001323 ! altered level of substance in cell during vegetative growth
is_a: FYPO:0001446 ! altered cellular trehalose level
created_by: midori
creation_date: 2012-08-23T15:26:41Z

[Term]
id: FYPO:0001449
name: normal cellular trehalose level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of trehalose measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular trehalose accumulation" RELATED [PomBase:mah]
synonym: "normal cellular trehalose level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-08-23T15:28:23Z

[Term]
id: FYPO:0001450
name: resistance to cold
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show decreased sensitivity to cold." [PomBase:mah]
synonym: "resistance to cold during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to cold" EXACT [PomBase:mah]
is_a: FYPO:0000850 ! resistance to stress during vegetative growth
created_by: midori
creation_date: 2012-08-23T15:46:25Z

[Term]
id: FYPO:0001451
name: resistance to freezing
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show decreased sensitivity to freezing." [PomBase:mah]
synonym: "resistance to freezing during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to freeze-thawing" RELATED [PomBase:al]
synonym: "resistant to freezing" EXACT [PomBase:mah]
is_a: FYPO:0001450 ! resistance to cold
created_by: midori
creation_date: 2012-08-23T15:47:42Z

[Term]
id: FYPO:0001452
name: resistance to water deprivation
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show decreased sensitivity to water deprivation." [PomBase:mah]
synonym: "resistance to water deprivation during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to dehydration" EXACT [GO:0009414, PomBase:al]
synonym: "resistant to water deprivation" EXACT [PomBase:mah]
is_a: FYPO:0000850 ! resistance to stress during vegetative growth
created_by: midori
creation_date: 2012-08-23T15:49:03Z

[Term]
id: FYPO:0001453
name: resistance to ethanol
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of ethanol than normal." [PomBase:mah]
synonym: "resistance to ethanol during vegetative growth" EXACT [PomBase:mah]
synonym: "resistance to ethyl alcohol" EXACT [CHEBI:16236]
synonym: "resistant to ethanol" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-08-23T15:50:53Z

[Term]
id: FYPO:0001454
name: normal cell population growth during cellular response to freezing
def: "A cell growth phenotype in which cell population growth is normal (i.e. indistinguishable from wild type) during a cellular response to freezing conditions." [PomBase:mah]
synonym: "normal cellular response to freeze-thawing" RELATED [PomBase:al]
synonym: "normal cellular response to freezing" RELATED [PomBase:mah]
synonym: "normal vegetative cell population growth during cellular response to freezing" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-08-23T15:54:30Z

[Term]
id: FYPO:0001455
name: normal cellular response to water deprivation
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to water deprivation is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular response to dehydration" EXACT [GO:0009414, GO:0042631, PomBase:al]
synonym: "normal cellular response to water deprivation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000968 ! normal cellular response to stress
is_a: FYPO:0001318 ! normal cellular response to chemical stimulus during vegetative growth
created_by: midori
creation_date: 2012-08-23T15:58:02Z

[Term]
id: FYPO:0001456
name: increased RNA level during cellular response to endoplasmic reticulum stress
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to endoplasmic reticulum stress is higher than normal. Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "increased mRNA level during cellular response to endoplasmic reticulum stress" NARROW [PomBase:mah]
synonym: "increased RNA accumulation during cellular response to endoplasmic reticulum stress" RELATED [PomBase:mah]
synonym: "increased RNA level during cellular response to endoplasmic reticulum stress during vegetative growth" EXACT [PomBase:mah]
synonym: "increased RNA level during response to ER stress" EXACT [GO:0034976, PomBase:mah]
synonym: "increased RNA level under ER stress-inducing conditions" RELATED [PomBase:vw]
is_a: FYPO:0000825 ! increased RNA level during vegetative growth
created_by: midori
creation_date: 2012-08-23T16:26:07Z

[Term]
id: FYPO:0001457
name: sensitive to tunicamycin
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to tunicamycin. Cells stop growing (and may die) at a concentration of tunicamycin that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to tunicamycin" EXACT [PomBase:mah]
synonym: "sensitive to tunicamycin during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-08-23T16:33:02Z

[Term]
id: FYPO:0001458
name: decreased histone H3-K14 acetylation
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased histone H3 K14 acetylation" EXACT [GO:0044154, PomBase:mah]
synonym: "decreased histone H3-K14 acetylation during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased histone lysine H3 K14 acetylation" EXACT [GO:0044154, PomBase:mah]
synonym: "reduced histone H3-K14 acetylation" EXACT [PomBase:mah]
is_a: FYPO:0000331 ! decreased histone acetylation
is_a: FYPO:0000788 ! abnormal histone H3-K14 acetylation
created_by: midori
creation_date: 2012-08-24T14:22:25Z

[Term]
id: FYPO:0001459
name: increased basal transcription from CDRE promoter
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the level of transcription from a calcineurin-dependent response element (CDRE)-containing promoter is higher than normal in the absence of a calcium ion stimulus." [PMID:21811607, PomBase:mah]
synonym: "increased basal transcription from CDRE promoter during vegetative growth" EXACT [PomBase:mah]
synonym: "increased transcription from CRDE promoter in the absence of calcium" EXACT [PomBase:al]
is_a: FYPO:0000780 ! increased transcription
created_by: midori
creation_date: 2012-08-29T14:03:47Z

[Term]
id: FYPO:0001460
name: increased duration of positive regulation of transcription from CDRE promoter in response to calcium ion
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from a calcineurin-dependent response element (CDRE)-containing promoter is increased for longer than normal following a calcium ion stimulus." [PMID:21811607, PomBase:mah]
synonym: "increased duration of positive regulation of transcription from CDRE promoter in response to calcium ion during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000780 ! increased transcription
created_by: midori
creation_date: 2012-08-29T14:14:33Z

[Term]
id: FYPO:0001461
name: normal immediate intracellular calcium spike following extracellular calcium stimulus
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the intracellular calcium ion (Ca2+) concentration briefly increases normally immediately following an extracellular Ca2+  stimulus. Normally, the intracellular Ca2+ concentration increases to a peak in a \"burst\" within one minute, and then decreases to a new steady-state concentration." [PMID:21811607, PomBase:mah]
synonym: "normal immediate intracellular calcium spike following extracellular calcium stimulus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001199 ! normal cellular calcium level
created_by: midori
creation_date: 2012-08-29T14:47:54Z

[Term]
id: FYPO:0001462
name: altered cellular calcium level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of calcium ion measured in a cell differs from normal." [PomBase:mah]
synonym: "abnormal cellular calcium accumulation" RELATED [PomBase:mah]
synonym: "abnormal cellular calcium level" EXACT [PomBase:mah]
synonym: "altered cellular calcium ion level" EXACT [PomBase:mah]
synonym: "altered cellular calcium level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001323 ! altered level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-08-29T14:51:00Z

[Term]
id: FYPO:0001463
name: abnormal immediate intracellular calcium spike following extracellular calcium stimulus
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the intracellular calcium ion (Ca2+) concentration briefly increases abnormally, or does not change, immediately following an extracellular Ca2+  stimulus. Normally, the intracellular Ca2+ concentration increases to a peak in a \"burst\" within one minute, and then decreases to a new steady-state concentration." [PMID:21811607, PomBase:mah]
synonym: "abnormal immediate intracellular calcium spike following extracellular calcium stimulus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001462 ! altered cellular calcium level
created_by: midori
creation_date: 2012-08-29T14:59:29Z

[Term]
id: FYPO:0001464
name: increased immediate intracellular calcium spike following extracellular calcium stimulus
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the intracellular calcium ion (Ca2+) concentration briefly increases to a greater extent than normal immediately following an extracellular Ca2+  stimulus. Normally, the intracellular Ca2+ concentration increases to a peak in a \"burst\" within one minute, and then decreases to a new steady-state concentration." [PMID:21811607, PomBase:mah]
synonym: "increased immediate intracellular calcium spike following extracellular calcium stimulus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001198 ! increased cellular calcium level
is_a: FYPO:0001463 ! abnormal immediate intracellular calcium spike following extracellular calcium stimulus
created_by: midori
creation_date: 2012-08-29T15:00:24Z

[Term]
id: FYPO:0001465
name: decreased immediate intracellular calcium spike following extracellular calcium stimulus
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the intracellular calcium ion (Ca2+) concentration briefly increases to a lesser extent than normal immediately following an extracellular Ca2+  stimulus. Normally, the intracellular Ca2+ concentration increases to a peak in a \"burst\" within one minute, and then decreases to a new steady-state concentration." [PMID:21811607, PomBase:mah]
synonym: "decreased immediate intracellular calcium spike following extracellular calcium stimulus during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced immediate intracellular calcium spike following extracellular calcium stimulus" EXACT [PomBase:mah]
is_a: FYPO:0001463 ! abnormal immediate intracellular calcium spike following extracellular calcium stimulus
created_by: midori
creation_date: 2012-08-29T15:03:36Z

[Term]
id: FYPO:0001466
name: abolished immediate intracellular calcium spike following extracellular calcium stimulus
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the intracellular calcium ion (Ca2+) concentration does not increase immediately following an extracellular Ca2+  stimulus. Normally, the intracellular Ca2+ concentration increases to a peak in a \"burst\" within one minute, and then decreases to a new steady-state concentration." [PMID:21811607, PomBase:mah]
synonym: "immediate intracellular calcium spike following extracellular calcium stimulus abolished" EXACT [PomBase:mah]
synonym: "immediate intracellular calcium spike following extracellular calcium stimulus abolished during vegetative growth" EXACT [PomBase:mah]
synonym: "immediate intracellular calcium spike following extracellular calcium stimulus absent" EXACT [PomBase:mah]
is_a: FYPO:0001463 ! abnormal immediate intracellular calcium spike following extracellular calcium stimulus
created_by: midori
creation_date: 2012-08-29T15:32:06Z

[Term]
id: FYPO:0001467
name: normal increase in steady-state intracellular calcium level following extracellular calcium stimulus
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the steady-state intracellular calcium ion (Ca2+) concentration increases normally following an extracellular Ca2+ stimulus. Normally, a dose-dependent increased steady-state Ca2+ concentration is reached within 2-3 minutes of extracellular Ca2+ addition, and is sustained for several hours." [PMID:21811607, PomBase:mah]
synonym: "normal increase in steady-state intracellular calcium level following extracellular calcium stimulus" EXACT [PomBase:mah]
synonym: "normal increase in steady-state intracellular calcium level following extracellular calcium stimulus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001199 ! normal cellular calcium level
created_by: midori
creation_date: 2012-08-29T15:52:34Z

[Term]
id: FYPO:0001468
name: abnormal steady-state intracellular calcium level following extracellular calcium stimulus
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the steady-state intracellular calcium ion (Ca2+) concentration increases abnormally, or does not change, following an extracellular Ca2+ stimulus. Normally, a dose-dependent increased steady-state Ca2+ concentration is reached within 2-3 minutes of extracellular Ca2+ addition, and is sustained for several hours." [PMID:21811607, PomBase:mah]
synonym: "abnormal increase in steady-state intracellular calcium level following extracellular calcium stimulus" EXACT [PomBase:mah]
synonym: "abnormal increase in steady-state intracellular calcium level following extracellular calcium stimulus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001462 ! altered cellular calcium level
created_by: midori
creation_date: 2012-08-29T15:54:22Z

[Term]
id: FYPO:0001469
name: increased steady-state intracellular calcium level following extracellular calcium stimulus
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the steady-state intracellular calcium ion (Ca2+) concentration increases to a greater extent than normal following an extracellular Ca2+ stimulus. Normally, a dose-dependent increased steady-state Ca2+ concentration is reached within 2-3 minutes of extracellular Ca2+ addition, and is sustained for several hours." [PMID:21811607, PomBase:mah]
synonym: "greater increase in steady-state intracellular calcium level following extracellular calcium stimulus during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001468 ! abnormal steady-state intracellular calcium level following extracellular calcium stimulus
created_by: midori
creation_date: 2012-08-29T15:55:25Z

[Term]
id: FYPO:0001470
name: normal cell population growth on tacrolimus
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing tacrolimus." [PomBase:mah]
synonym: "normal cell population growth in presence of tacrolimus" EXACT [PomBase:mah]
synonym: "normal cellular response to FK506" EXACT [CHEBI:61057]
synonym: "normal cellular response to tacrolimus" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on tacrolimus" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on tacrolimus" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-08-29T16:03:18Z

[Term]
id: FYPO:0001471
name: normal cell population growth on tacrolimus during salt stress
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing tacrolimus, when the cell is subject to salt stress." [PomBase:mah]
synonym: "normal cell population growth in presence of tacrolimus during salt stress" EXACT [PomBase:mah]
synonym: "normal cell population growth on FK506 during salt stress" EXACT [CHEBI:61057]
synonym: "normal cellular response to salt stress and tacrolimus" RELATED [PomBase:al]
synonym: "normal cellular response to tacrolimus and salt stress" RELATED [PomBase:al]
synonym: "normal cellular response to tacrolimus during salt stress" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on tacrolimus during salt stress" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on tacrolimus during salt stress" EXACT [PomBase:mah]
is_a: FYPO:0001037 ! normal cell population growth during cellular response to salt stress
is_a: FYPO:0001472 ! normal cell population growth on tacrolimus during osmotic stress
created_by: midori
creation_date: 2012-08-29T16:04:35Z

[Term]
id: FYPO:0001472
name: normal cell population growth on tacrolimus during osmotic stress
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing tacrolimus, when the cell is subject to osmotic stress." [PomBase:mah]
synonym: "normal cell population growth in presence of tacrolimus during osmotic stress" EXACT [PomBase:mah]
synonym: "normal cell population growth on tacrolimus and sorbitol" NARROW [PomBase:al]
synonym: "normal cellular response to FK506 during osmotic stress" EXACT [CHEBI:61057]
synonym: "normal cellular response to tacrolimus and osmotic stress" RELATED [PomBase:al]
synonym: "normal cellular response to tacrolimus and sorbitol" RELATED [PomBase:al]
synonym: "normal cellular response to tacrolimus during osmotic stress" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on tacrolimus during osmotic stress" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on tacrolimus during osmotic stress" EXACT [PomBase:mah]
is_a: FYPO:0001021 ! normal cell population growth during cellular response to osmotic stress
is_a: FYPO:0001470 ! normal cell population growth on tacrolimus
created_by: midori
creation_date: 2012-08-29T16:08:07Z

[Term]
id: FYPO:0001473
name: resistance to tacrolimus during salt stress
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of tacrolimus than normal when the cells are subject to salt stress." [PomBase:mah]
synonym: "resistance to FK506 during salt stress" EXACT [CHEBI:61057, PomBase:mah]
synonym: "resistance to salt stress and tacrolimus" EXACT [PomBase:al]
synonym: "resistance to tacrolimus and salt stress" EXACT [PomBase:al]
synonym: "resistance to tacrolimus during salt stress during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to tacrolimus" EXACT [PomBase:mah]
is_a: FYPO:0001379 ! resistance to tacrolimus
created_by: midori
creation_date: 2012-08-29T16:11:06Z

[Term]
id: FYPO:0001474
name: abnormal spindle pole body structure
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which the structure of the spindle pole body is abnormal." [PomBase:mah]
comment: Note that an abnormal spindle pole body organization process may, but does not necessarily, result in abnormal spindle pole body structure.
synonym: "abnormal SPB structure" EXACT [PomBase:mah]
synonym: "abnormal spindle pole body structure during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
created_by: midori
creation_date: 2012-08-29T16:52:01Z

[Term]
id: FYPO:0001475
name: fragmented spindle pole body
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the spindle pole body is broken into fragments." [PomBase:mah]
synonym: "fragmented SPB" EXACT [PomBase:mah]
synonym: "fragmented spindle pole body during vegetative growth" EXACT [PomBase:mah]
synonym: "spindle pole body fragmentation" EXACT [PomBase:vw]
is_a: FYPO:0001474 ! abnormal spindle pole body structure
created_by: midori
creation_date: 2012-08-29T16:52:11Z

[Term]
id: FYPO:0001476
name: abnormal guanosine-diphosphatase activity
def: "A molecular function phenotype in which the observed rate of guanosine-diphosphatase activity is abnormal." [PomBase:mah]
synonym: "abnormal GDPase activity" EXACT [GO:0004382, PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-08-30T11:37:58Z

[Term]
id: FYPO:0001477
name: decreased guanosine-diphosphatase activity
def: "A molecular function phenotype in which the observed rate of guanosine-diphosphatase activity is decreased." [PomBase:mah]
synonym: "decreased GDPase activity" EXACT [GO:0004382, PomBase:mah]
synonym: "reduced guanosine-diphosphatase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0001476 ! abnormal guanosine-diphosphatase activity
created_by: midori
creation_date: 2012-08-30T11:38:10Z

[Term]
id: FYPO:0001478
name: increased guanosine-diphosphatase activity
def: "A molecular function phenotype in which the observed rate of guanosine-diphosphatase activity is increased." [PomBase:mah]
synonym: "increased GDPase activity" EXACT [GO:0004382, PomBase:mah]
is_a: FYPO:0000662 ! increased catalytic activity
is_a: FYPO:0001476 ! abnormal guanosine-diphosphatase activity
created_by: midori
creation_date: 2012-08-30T11:38:17Z

[Term]
id: FYPO:0001479
name: abnormal alpha,alpha-trehalase activity
def: "A molecular function phenotype in which the observed rate of alpha,alpha-trehalase activity is abnormal." [PomBase:mah]
synonym: "abnormal neutral trehalase activity" EXACT [PMID:9729425, PomBase:mah]
synonym: "abnormal trehalase activity" BROAD [GO:0004555, GO:0015927]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-08-30T11:47:38Z

[Term]
id: FYPO:0001480
name: normal alpha,alpha-trehalase activity
def: "A molecular function phenotype in which the observed rate of alpha,alpha-trehalase activity is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal neutral trehalase activity" EXACT [PMID:9729425, PomBase:mah]
synonym: "normal trehalase activity" BROAD [GO:0004555, GO:0015927]
is_a: FYPO:0000660 ! normal catalytic activity
created_by: midori
creation_date: 2012-08-30T12:05:18Z

[Term]
id: FYPO:0001481
name: alpha,alpha-trehalase activity increase abolished during cellular response to nutrient
def: "A molecular function phenotype in which the observed rate of alpha,alpha-trehalase activity does not increase as a result of a nutrient stimulus." [PomBase:mah]
synonym: "absent increase in trehalase activity following nutrient stimulus" EXACT [PomBase:al]
synonym: "neutral trehalase activity increase abolished during cellular response to nutrient" EXACT [PMID:9729425, PomBase:mah]
synonym: "trehalase activity increase abolished during cellular response to nutrient" BROAD [GO:0004555, GO:0015927]
is_a: FYPO:0001479 ! abnormal alpha,alpha-trehalase activity
is_a: FYPO:0001484 ! abnormal cellular response to nutrient
created_by: midori
creation_date: 2012-08-30T12:11:19Z

[Term]
id: FYPO:0001482
name: alpha,alpha-trehalase activity increase abolished during cellular response to heat
def: "A molecular function phenotype in which the observed rate of alpha,alpha-trehalase activity does not increase as a result of a heat stimulus." [PomBase:mah]
synonym: "absent increase in trehalase activity in response to high temperature" EXACT [PomBase:al]
synonym: "neutral trehalase activity increase abolished during cellular response to heat" EXACT [PMID:9729425, PomBase:mah]
synonym: "trehalase activity increase abolished during cellular response to heat" BROAD [GO:0004555, GO:0015927]
is_a: FYPO:0000212 ! abnormal cellular response to heat
is_a: FYPO:0001479 ! abnormal alpha,alpha-trehalase activity
created_by: midori
creation_date: 2012-08-30T12:15:03Z

[Term]
id: FYPO:0001483
name: normal alpha,alpha-trehalase activity increase during cellular response to oxidative stress
def: "A molecular function phenotype in which the observed rate of alpha,alpha-trehalase activity increases normally (i.e. as in wild type) as a result of oxidative stress." [PomBase:mah]
synonym: "normal increase in trehalase activity in response to oxidative stress" EXACT [PomBase:al]
synonym: "normal neutral trehalase activity increase during cellular response to oxidative stress" EXACT [PMID:9729425, PomBase:mah]
synonym: "normal trehalase activity increase during cellular response to oxidative stress" BROAD [GO:0004555, GO:0015927]
is_a: FYPO:0001480 ! normal alpha,alpha-trehalase activity
is_a: FYPO:0001485 ! normal cellular response to oxidative stress
created_by: midori
creation_date: 2012-08-30T12:18:52Z

[Term]
id: FYPO:0001484
name: abnormal cellular response to nutrient
def: "A chemical response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to a nutrient is abnormal." [PomBase:mah]
synonym: "abnormal cellular response to nutrient during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001342 ! cellular response phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-08-30T13:01:53Z

[Term]
id: FYPO:0001485
name: normal cellular response to oxidative stress
def: "A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to oxidative stress is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular response to oxidative stress during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000968 ! normal cellular response to stress
is_a: FYPO:0001318 ! normal cellular response to chemical stimulus during vegetative growth
created_by: midori
creation_date: 2012-08-30T13:03:23Z

[Term]
id: FYPO:0001486
name: normal RNA level during cellular response to salt stress
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to salt stress is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "normal mRNA level during cellular response to salt stress" NARROW [PomBase:mah]
synonym: "normal RNA accumulation during cellular response to salt stress" RELATED [PomBase:mah]
synonym: "normal RNA level during cellular response to salt stress during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001317 ! normal RNA level during vegetative growth
created_by: midori
creation_date: 2012-08-30T13:08:09Z

[Term]
id: FYPO:0001487
name: normal RNA level during cellular response to heat
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to heat is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "normal mRNA level during cellular response to heat" NARROW [PomBase:mah]
synonym: "normal RNA accumulation during cellular response to heat" RELATED [PomBase:mah]
synonym: "normal RNA level during cellular response to heat during vegetative growth" EXACT [PomBase:mah]
synonym: "normal RNA level during cellular response to high temperature" EXACT [PomBase:al]
is_a: FYPO:0001317 ! normal RNA level during vegetative growth
created_by: midori
creation_date: 2012-08-30T13:09:03Z

[Term]
id: FYPO:0001488
name: sensitive to protamine sulfate
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to protamine sulfate. A protamine is any of a group of simple proteins that yield basic amino acids on hydrolysis, and forms a complex with heparin. Cells stop growing (and may die) at a concentration of protamine sulfate that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to protamine sulfate" EXACT [PomBase:mah]
synonym: "sensitive to protamine sulfate during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-08-30T13:32:12Z

[Term]
id: FYPO:0001489
name: inviable vegetative cell
def: "A cell phenotype in which a cell is inviable in the phase of the life cycle during which wild type cells undergo vegetative growth." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "essential in vegetative cell" RELATED [PomBase:mah]
synonym: "inviable cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000049 ! inviable cell
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2012-08-30T13:59:02Z

[Term]
id: FYPO:0001490
name: elongated inviable vegetative cell
def: "A cell morphology phenotype in which a vegetative cell is inviable and longer than normal." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "elongated inviable cell during vegetative growth" EXACT [PomBase:mah]
synonym: "essential; elongated vegetative cell" RELATED [PomBase:mah]
is_a: FYPO:0001122 ! elongated vegetative cell
is_a: FYPO:0001489 ! inviable vegetative cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000049 ! inviable cell
created_by: midori
creation_date: 2012-08-30T14:08:27Z

[Term]
id: FYPO:0001491
name: viable vegetative cell
def: "A cell phenotype in which a vegetatively growing cell is viable." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'viable cell population' (FYPO:0002058) or one of its descendants.
synonym: "viable cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000124 ! viable cell
is_a: FYPO:0001320 ! vegetative cell phenotype
created_by: midori
creation_date: 2012-08-30T14:12:48Z

[Term]
id: FYPO:0001492
name: elongated viable vegetative cell
def: "A cell morphology phenotype in which a vegetative cell is viable and longer than normal." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'viable cell population' (FYPO:0002058) or one of its descendants.
synonym: "elongated viable cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001122 ! elongated vegetative cell
is_a: FYPO:0001491 ! viable vegetative cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000124 ! viable cell
created_by: midori
creation_date: 2012-08-30T14:17:56Z

[Term]
id: FYPO:0001493
name: inviable elongated multinucleate vegetative cell
def: "A cell morphology phenotype in which a vegetative cell is inviable, longer than normal, and contains more than one nucleus apiece." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "elongated inviable multinucleate cell during vegetative growth" EXACT [PomBase:mah]
synonym: "elongated multinucleate inviable vegetative cell" EXACT [PomBase:mah]
synonym: "essential; elongated multinucleate vegetative cell" RELATED [PomBase:mah]
is_a: FYPO:0000133 ! elongated multinucleate cell
is_a: FYPO:0001490 ! elongated inviable vegetative cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000049 ! inviable cell
relationship: has_part FYPO:0000061 ! multinucleate
created_by: midori
creation_date: 2012-08-30T14:27:16Z

[Term]
id: FYPO:0001494
name: elongated multiseptate inviable vegetative cell
def: "A cell morphology phenotype in which a vegetative cell is inviable, longer than normal, and contains more than one septum." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "elongated inviable multiseptate cell during vegetative growth" EXACT [PomBase:mah]
synonym: "essential; elongated multiseptate vegetative cell" RELATED [PomBase:mah]
is_a: FYPO:0000223 ! elongated multiseptate cells
is_a: FYPO:0001490 ! elongated inviable vegetative cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000049 ! inviable cell
relationship: has_part FYPO:0000118 ! multiseptate
created_by: midori
creation_date: 2012-08-30T14:30:53Z

[Term]
id: FYPO:0001495
name: viable elongated multinucleate vegetative cell
def: "A cell morphology phenotype in which a vegetative cell is viable, longer than normal, and contains more than one nucleus." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'viable cell population' (FYPO:0002058) or one of its descendants.
synonym: "elongated multinucleate viable cell during vegetative growth" EXACT [PomBase:mah]
synonym: "elongated multinucleate viable vegetative cell" EXACT [PomBase:mah]
is_a: FYPO:0000133 ! elongated multinucleate cell
is_a: FYPO:0001492 ! elongated viable vegetative cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000061 ! multinucleate
relationship: has_part FYPO:0000124 ! viable cell
created_by: midori
creation_date: 2012-08-30T14:32:23Z

[Term]
id: FYPO:0001496
name: elongated multiseptate viable vegetative cell
def: "A cell morphology phenotype in which a vegetative cell is viable, longer than normal, and contain more than one septum." [PomBase:mah]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'viable cell population' (FYPO:0002058) or one of its descendants.
synonym: "elongated viable multiseptate cell during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000223 ! elongated multiseptate cells
is_a: FYPO:0001492 ! elongated viable vegetative cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000118 ! multiseptate
relationship: has_part FYPO:0000124 ! viable cell
created_by: midori
creation_date: 2012-08-30T14:32:53Z

[Term]
id: FYPO:0001497
name: elongated inviable vegetative cell with mitotic cell cycle arrest in S phase
def: "A cell morphology phenotype in which a vegetative cell is inviable and longer than normal, and progress through the mitotic cell cycle is arrested in S phase." [PomBase:mah]
comment: A population of cells with this phenotype usually shows a marginal increase in cell number before all cells die. Cells arrested in S phase typically have more than 1C, but less than 2C, DNA content. Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "elongated inviable cell with mitotic cell cycle arrest in S phase during vegetative growth" EXACT [PomBase:mah]
synonym: "essential; elongated vegetative cell with mitotic cell cycle arrest in S phase" RELATED [PomBase:mah]
synonym: "mitotic cell cycle arrest in S-phase with elongated inviable cell" EXACT [PomBase:vw]
synonym: "mitotic S-phase arrested elongated inviable vegetative cell" EXACT [PomBase:mah]
is_a: FYPO:0001490 ! elongated inviable vegetative cell
relationship: has_part FYPO:0000017 ! elongated cell
relationship: has_part FYPO:0000049 ! inviable cell
relationship: has_part FYPO:0000611 ! mitotic cell cycle arrest in S phase
created_by: midori
creation_date: 2012-08-30T14:37:31Z

[Term]
id: FYPO:0001498
name: sensitive to cytochalasin B
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to cytochalasin B. Cells stop growing (and may die) at a concentration of cytochalasin B that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to cytochalasin B" EXACT [PomBase:mah]
synonym: "sensitive to cytochalasin B during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-08-30T15:23:47Z

[Term]
id: FYPO:0001499
name: resistance to cytochalasin B
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of cytochalasin B than normal." [PomBase:mah]
synonym: "resistance to cytochalasin B during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-08-30T15:24:42Z

[Term]
id: FYPO:0001500
name: normal cell population growth on cytochalasin B
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing cytochalasin B." [PomBase:mah]
synonym: "normal cell population growth in presence of cytochalasin B" EXACT [PomBase:mah]
synonym: "normal cellular response to cytochalasin B" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on cytochalasin B" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on cytochalasin B" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-08-30T15:25:41Z

[Term]
id: FYPO:0001501
name: sensitive to brefeldin A
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to brefeldin A. Cells stop growing (and may die) at a concentration of brefeldin A that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to brefeldin A" EXACT [PomBase:mah]
synonym: "sensitive to BFA" EXACT [PomBase:mah]
synonym: "sensitive to brefeldin A during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-08-30T15:29:30Z

[Term]
id: FYPO:0001502
name: increased cellular trehalose level during cellular response to osmotic stress
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of trehalose measured in a cell is higher than normal when the cell is subject to osmotic stress." [PomBase:mah]
synonym: "increased cellular trehalose level during vegetative growth and during cellular response to osmotic stress" EXACT [PomBase:mah]
synonym: "increased cellular trehalose level in response to osmotic stress" EXACT [PomBase:al]
synonym: "increased trehalose accumulation during cellular response to osmotic stress" RELATED [PomBase:mah]
is_a: FYPO:0001444 ! increased cellular trehalose level
created_by: midori
creation_date: 2012-08-31T14:27:51Z

[Term]
id: FYPO:0001503
name: decreased alpha,alpha-trehalase activity during sporulation
def: "A molecular function phenotype in which the observed rate of alpha,alpha-trehalase activity is lower than normal during sporulation." [PomBase:mah]
synonym: "decreased neutral trehalase activity during sporulation" EXACT [PMID:9729425, PomBase:mah]
synonym: "decreased trehalase activity during sporulation" BROAD [GO:0004555, GO:0015927]
synonym: "reduced alpha,alpha-trehalase activity during sporulation" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0001479 ! abnormal alpha,alpha-trehalase activity
created_by: midori
creation_date: 2012-08-31T14:29:44Z

[Term]
id: FYPO:0001504
name: decreased cellular trehalose level during sporulation
def: "A cell phenotype in which the amount of trehalose measured in a cell is lower than normal during sporulation." [PomBase:mah]
synonym: "decreased cellular trehalose accumulation during sporulation" RELATED [PomBase:mah]
synonym: "reduced cellular trehalose level during sporulation" EXACT [PomBase:mah]
is_a: FYPO:0001447 ! decreased cellular trehalose level
created_by: midori
creation_date: 2012-08-31T14:31:44Z

[Term]
id: FYPO:0001505
name: increased cellular phosphatidylserine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylserine measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular phosphatidyl-L-serine level" EXACT [CHEBI:18303]
synonym: "increased cellular phosphatidylserine level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased cellular PS level" EXACT [PomBase:mah]
synonym: "increased phosphatidylserine accumulation" RELATED [PomBase:mah]
is_a: FYPO:0001288 ! increased phospholipid level
created_by: midori
creation_date: 2012-08-31T14:45:54Z

[Term]
id: FYPO:0001506
name: normal cellular phosphatidylcholine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylcholine measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular PC level" EXACT [PomBase:mah]
synonym: "normal cellular phosphatidylcholine accumulation" RELATED [PomBase:mah]
synonym: "normal cellular phosphatidylcholine level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001543 ! normal cellular phosphorus level
created_by: midori
creation_date: 2012-08-31T14:48:33Z

[Term]
id: FYPO:0001507
name: normal cellular phosphatidylinositol level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular phosphatidylinositol accumulation" RELATED [PomBase:mah]
synonym: "normal cellular phosphatidylinositol level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal cellular PI level" EXACT [CHEBI:28874, PomBase:mah]
is_a: FYPO:0001543 ! normal cellular phosphorus level
created_by: midori
creation_date: 2012-08-31T14:49:23Z

[Term]
id: FYPO:0001508
name: abolished protein localization to chromatin during vegetative growth
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin is abolished in the vegetative growth phase of the life cycle." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abolished protein localisation to chromatin during vegetative growth" EXACT [PomBase:mah]
synonym: "protein localization to chromatin during vegetative growth abolished" EXACT [PomBase:mah]
is_a: FYPO:0000452 ! abnormal protein localization to chromatin during vegetative growth
is_a: FYPO:0001179 ! protein localization abolished during vegetative growth
is_a: FYPO:0001678 ! abolished protein localization to chromatin
created_by: midori
creation_date: 2012-09-04T17:02:28Z

[Term]
id: FYPO:0001509
name: normal protein localization to chromatin
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "normal protein localisation to chromatin" EXACT [PomBase:mah]
synonym: "normal protein localization to chromatin during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000644 ! normal protein localization
created_by: midori
creation_date: 2012-09-04T17:04:49Z

[Term]
id: FYPO:0001510
name: viable vegetative cell, abnormal cell shape, normal cell size
def: "A cell phenotype in which a cell is viable, cell shape is altered, and cell size remains normal, in the vegetative growth phase of the life cycle." [PomBase:mah, PomBase:vw]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'viable cell population' (FYPO:0002058) or one of its descendants.
synonym: "viable lumpy cell" RELATED [PomBase:vw]
synonym: "viable, abnormal cell shape, normal cell size during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001121 ! vegetative cell, abnormal cell shape, normal cell size
is_a: FYPO:0001491 ! viable vegetative cell
relationship: has_part FYPO:0001124 ! normal cell size
relationship: has_part FYPO:0001126 ! abnormal cell shape
relationship: has_part FYPO:0001491 ! viable vegetative cell
created_by: midori
creation_date: 2012-09-13T10:47:20Z

[Term]
id: FYPO:0001511
name: inviable vegetative cell, abnormal cell shape, normal cell size
def: "A cell phenotype in which a cell is inviable, cell shape is altered, and cell size remains normal, in the vegetative growth phase of the life cycle." [PomBase:mah, PomBase:vw]
comment: Note that if you have done an experiment that assays the viability of a population of cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (FYPO:0002059) or one of its descendants.
synonym: "inviable lumpy cell" RELATED [PomBase:vw]
synonym: "inviable, abnormal cell shape, normal cell size during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001121 ! vegetative cell, abnormal cell shape, normal cell size
is_a: FYPO:0001489 ! inviable vegetative cell
relationship: has_part FYPO:0001124 ! normal cell size
relationship: has_part FYPO:0001126 ! abnormal cell shape
relationship: has_part FYPO:0001489 ! inviable vegetative cell
created_by: midori
creation_date: 2012-09-13T10:52:33Z

[Term]
id: FYPO:0001512
name: branched, elongated cell
def: "A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is branched, and therefore septated, and longer than normal." [PomBase:mah]
synonym: "branched, elongated cell during vegetative growth" EXACT [PomBase:mah]
synonym: "branched, elongated, septated cell" EXACT [PomBase:jh, PomBase:mah, PomBase:vw]
synonym: "branched, long, septated cell" EXACT [PomBase:vw]
is_a: FYPO:0000015 ! branched cell
is_a: FYPO:0001122 ! elongated vegetative cell
relationship: has_part FYPO:0000015 ! branched cell
relationship: has_part FYPO:0000017 ! elongated cell
created_by: midori
creation_date: 2012-09-13T10:58:38Z

[Term]
id: FYPO:0001513
name: normal mitotic sister chromatid segregation
def: "A cellular process phenotype in which mitotic sister chromatid segregation is normal (i.e. indistinguishable from wild type). Mitotic sister chromatid segregation is the entire process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle." [GO:0000070, PomBase:mah]
synonym: "normal mitotic chromosome segregation" EXACT [PomBase:mah]
synonym: "normal mitotic sister chromatid segregation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001007 ! normal mitosis
created_by: midori
creation_date: 2012-09-13T11:23:11Z

[Term]
id: FYPO:0001514
name: decreased protein localization to nucleus
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is decreased." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "decreased protein localisation to nucleus" EXACT [GO:0034504, PomBase:mah]
synonym: "decreased protein localization to nucleus during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced protein localization to nucleus" EXACT [PomBase:mah]
is_a: FYPO:0001129 ! abnormal protein localization to nucleus
created_by: midori
creation_date: 2012-09-13T11:39:44Z

[Term]
id: FYPO:0001515
name: abnormal telomere tethering at nuclear periphery
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which telomere tethering at the nuclear periphery is abnormal." [PomBase:mah]
synonym: "abnormal telomere anchoring at nuclear periphery" EXACT [PomBase:vw]
synonym: "abnormal telomere tethering at nuclear periphery during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001337 ! localization phenotype during vegetative growth
is_a: FYPO:0001362 ! abnormal cellular process during vegetative growth
created_by: midori
creation_date: 2012-09-13T11:46:25Z

[Term]
id: FYPO:0001516
name: resistance to mercury
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of mercury ions than normal." [PomBase:mah]
synonym: "resistance to mercury during vegetative growth" EXACT [PomBase:mah]
synonym: "resistance to mercury ion" EXACT [PomBase:mah]
synonym: "resistant to mercury" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-09-13T13:16:13Z

[Term]
id: FYPO:0001517
name: resistance to aluminium
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of aluminium ions than normal." [PomBase:mah]
synonym: "resistance to aluminium cation" EXACT [CHEBI:63062]
synonym: "resistance to aluminium during vegetative growth" EXACT [PomBase:mah]
synonym: "resistance to aluminum" EXACT [PomBase:mah]
synonym: "resistant to aluminium" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-09-13T13:22:53Z

[Term]
id: FYPO:0001518
name: resistance to diethyl maleate
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of diethyl maleate than normal." [PomBase:mah]
comment: Note that diethyl maleate should not be written without a space, as diethylmaleate is a different compound.
synonym: "resistance to DEM" EXACT [PomBase:al]
synonym: "resistance to diethyl maleate during vegetative growth" EXACT [PomBase:mah]
synonym: "resistant to diethyl maleate" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-09-13T13:41:57Z

[Term]
id: FYPO:0001519
name: abnormal gamma-glutamyltransferase activity
def: "A molecular function phenotype in which the observed rate of gamma-glutamyltransferase activity is abnormal." [PomBase:mah]
synonym: "abnormal gamma-glutamyl transpeptidase activity" EXACT [GO:0003840, PomBase:mah]
synonym: "abnormal GGT activity" BROAD [PomBase:al, PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-09-13T13:53:10Z

[Term]
id: FYPO:0001520
name: increased gamma-glutamyltransferase activity
def: "A molecular function phenotype in which the observed rate of gamma-glutamyltransferase activity is increased." [PomBase:mah]
synonym: "increased gamma-glutamyl transpeptidase activity" EXACT [GO:0003840, PomBase:mah]
synonym: "increased GGT activity" BROAD [PomBase:al, PomBase:mah]
is_a: FYPO:0000662 ! increased catalytic activity
is_a: FYPO:0001519 ! abnormal gamma-glutamyltransferase activity
created_by: midori
creation_date: 2012-09-13T13:53:17Z

[Term]
id: FYPO:0001521
name: increased cellular glutathione level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of glutathione (GSH) measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular glutathione level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased cellular GSH level" EXACT [CHEBI:16856, PomBase:al]
synonym: "increased cellular L-gamma-glutamyl-L-cysteinylglycine level" EXACT [CHEBI:16856]
synonym: "increased cellular reduced glutathione level" EXACT [CHEBI:16856, PomBase:al]
synonym: "increased glutathione accumulation" RELATED [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-13T14:02:16Z

[Term]
id: FYPO:0001522
name: normal cell population growth on caffeine
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing caffeine." [PomBase:mah]
synonym: "normal cell population growth in presence of caffeine" EXACT [PomBase:mah]
synonym: "normal cellular response to caffeine" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on caffeine" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on caffeine" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-09-13T14:06:29Z

[Term]
id: FYPO:0001523
name: normal cell population growth on leptomycin B
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing leptomycin B." [PomBase:mah]
synonym: "normal cell population growth in presence of leptomycin B" EXACT [PomBase:mah]
synonym: "normal cellular response to leptomycin B" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on leptomycin B" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on leptomycin B" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-09-13T14:09:56Z

[Term]
id: FYPO:0001524
name: resistance to L-thialysine
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of L-thialysine than normal." [PomBase:mah]
synonym: "resistance to L-thialysine during vegetative growth" EXACT [PomBase:mah]
synonym: "resistance to thialysine" BROAD [PomBase:mah]
synonym: "resistant to L-thialysine" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-09-13T14:36:42Z

[Term]
id: FYPO:0001525
name: sensitive to L-thialysine
def: "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to L-thialysine. Cells stop growing (and may die) at a concentration of L-thialysine that allows wild type cells to grow." [PomBase:mah]
synonym: "hypersensitive to L-thialysine" EXACT [PomBase:mah]
synonym: "sensitive to L-thialysine during vegetative growth" EXACT [PomBase:mah]
synonym: "sensitive to thialysine" BROAD [PomBase:mah]
is_a: FYPO:0000127 ! increased sensitivity to chemical
created_by: midori
creation_date: 2012-09-13T14:43:00Z

[Term]
id: FYPO:0001526
name: normal cell population growth on L-thialysine
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing L-thialysine." [PomBase:mah]
synonym: "normal cell population growth in presence of L-thialysine" EXACT [PomBase:mah]
synonym: "normal cell population growth on thialysine" BROAD [PomBase:mah]
synonym: "normal cellular response to L-thialysine" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on L-thialysine" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on L-thialysine" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-09-13T14:46:44Z

[Term]
id: FYPO:0001527
name: normal GTP binding
def: "A molecular function phenotype in which occurrence of GTP binding by a mutated gene product is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0000706 ! normal molecular function
is_a: FYPO:0001092 ! binding phenotype
created_by: midori
creation_date: 2012-09-13T14:53:26Z

[Term]
id: FYPO:0001528
name: abnormal GTP binding
def: "A molecular function phenotype in which occurrence of GTP binding by a gene product (usually a protein) in a mutant is abnormal." [PomBase:mah]
comment: This term can mean that the mutated gene product itself binds GTP differently from wild type, or that a mutation in one gene affects GTP binding by a second gene product. When using this term, it is therefore recommended to note the specific protein(s) affected.
is_a: FYPO:0000707 ! abnormal molecular function
is_a: FYPO:0001092 ! binding phenotype
created_by: midori
creation_date: 2012-09-13T14:54:29Z

[Term]
id: FYPO:0001529
name: decreased GTP binding
def: "A molecular function phenotype in which occurrence of GTP binding  by a gene product (usually a protein) in a mutant is decreased." [PomBase:mah]
comment: This term can mean that the mutated gene product itself binds GTP less than wild type, or that a mutation in one gene decreases GTP binding by a second gene product. When using this term, it is therefore recommended to note the specific protein(s) affected.
synonym: "reduced GTP binding" EXACT [PomBase:mah]
is_a: FYPO:0001528 ! abnormal GTP binding
created_by: midori
creation_date: 2012-09-13T14:55:25Z

[Term]
id: FYPO:0001530
name: abnormal GTPase activity
def: "A molecular function phenotype in which the observed rate of GTPase activity is abnormal." [PomBase:mah]
is_a: FYPO:0000661 ! abnormal catalytic activity
created_by: midori
creation_date: 2012-09-13T15:01:53Z

[Term]
id: FYPO:0001531
name: decreased GTPase activity
def: "A molecular function phenotype in which the observed rate of GTPase activity is decreased." [PomBase:mah]
synonym: "reduced GTPase activity" EXACT [PomBase:mah]
is_a: FYPO:0000663 ! decreased catalytic activity
is_a: FYPO:0001530 ! abnormal GTPase activity
created_by: midori
creation_date: 2012-09-13T15:02:01Z

[Term]
id: FYPO:0001532
name: normal duration of mitotic S phase
def: "A cell cycle phenotype in the duration of S phase of the mitotic cell cycle is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
is_a: FYPO:0000411 ! normal cell cycle progression
created_by: midori
creation_date: 2012-09-13T15:28:30Z

[Term]
id: FYPO:0001533
name: sensitive to zinc starvation
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to zinc starvation." [PomBase:mah]
synonym: "hypersensitive to zinc starvation" EXACT [PomBase:mah]
synonym: "sensitive to zinc ion starvation" EXACT [PomBase:mah]
synonym: "sensitive to zinc starvation during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000304 ! sensitive to stress
is_a: FYPO:0001339 ! abnormal cellular response to starvation during vegetative growth
created_by: midori
creation_date: 2012-09-13T15:35:17Z

[Term]
id: FYPO:0001534
name: decreased cellular zinc level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of zinc ion measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular zinc ion level" EXACT [PomBase:mah]
synonym: "decreased cellular zinc level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased zinc accumulation" RELATED [PomBase:al]
synonym: "reduced cellular zinc level" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-13T15:43:51Z

[Term]
id: FYPO:0001535
name: normal cellular zinc level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of zinc ion measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular zinc accumulation" RELATED [PomBase:mah]
synonym: "normal cellular zinc ion level" EXACT [PomBase:mah]
synonym: "normal cellular zinc level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-13T15:48:08Z

[Term]
id: FYPO:0001536
name: normal cellular copper level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of copper ion measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular copper accumulation" RELATED [PomBase:mah]
synonym: "normal cellular copper ion level" EXACT [PomBase:mah]
synonym: "normal cellular copper level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-13T16:07:14Z

[Term]
id: FYPO:0001537
name: normal cellular iron level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of iron ion measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular iron accumulation" RELATED [PomBase:mah]
synonym: "normal cellular iron ion level" EXACT [PomBase:mah]
synonym: "normal cellular iron level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-13T16:07:47Z

[Term]
id: FYPO:0001538
name: normal cellular potassium level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of potassium ion measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular potassium accumulation" RELATED [PomBase:mah]
synonym: "normal cellular potassium ion level" EXACT [PomBase:mah]
synonym: "normal cellular potassium level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-13T16:08:23Z

[Term]
id: FYPO:0001539
name: normal cellular magnesium level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of magnesium ion measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular magnesium accumulation" RELATED [PomBase:mah]
synonym: "normal cellular magnesium ion level" EXACT [PomBase:mah]
synonym: "normal cellular magnesium level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-13T16:14:33Z

[Term]
id: FYPO:0001540
name: normal cellular manganese level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of manganese ion measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular manganese accumulation" RELATED [PomBase:mah]
synonym: "normal cellular manganese ion level" EXACT [PomBase:mah]
synonym: "normal cellular manganese level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-13T16:08:54Z

[Term]
id: FYPO:0001541
name: normal cellular molybdenum level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of molybdenum ion measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular molybdenum accumulation" RELATED [PomBase:mah]
synonym: "normal cellular molybdenum ion level" EXACT [PomBase:mah]
synonym: "normal cellular molybdenum level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-13T16:09:45Z

[Term]
id: FYPO:0001542
name: normal cellular nickel level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of nickel ion measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular nickel accumulation" RELATED [PomBase:mah]
synonym: "normal cellular nickel ion level" EXACT [PomBase:mah]
synonym: "normal cellular nickel level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-13T16:10:13Z

[Term]
id: FYPO:0001543
name: normal cellular phosphorus level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphorus measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular phosphorus accumulation" RELATED [PomBase:mah]
synonym: "normal cellular phosphorus level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-13T16:11:42Z

[Term]
id: FYPO:0001544
name: normal cellular sulfur level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of sulfur measured in a cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular sulfur accumulation" RELATED [PomBase:mah]
synonym: "normal cellular sulfur level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal cellular sulphur level" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-13T16:12:10Z

[Term]
id: FYPO:0001545
name: normal cell population growth on L-canavanine
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing L-canavanine." [PomBase:mah]
synonym: "normal cell population growth in presence of L-canavanine" EXACT [PomBase:mah]
synonym: "normal cell population growth on canavanine" BROAD [PomBase:mah]
synonym: "normal cellular response to L-canavanine" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on L-canavanine" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on L-canavanine" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-09-14T14:23:13Z

[Term]
id: FYPO:0001546
name: decreased RNA level during cellular response to zinc ion
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to zinc ion is lower than normal. Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "decreased mRNA level during cellular response to zinc ion" NARROW [PomBase:mah]
synonym: "decreased RNA accumulation during cellular response to zinc ion" RELATED [PomBase:mah]
synonym: "decreased RNA level during cellular response to zinc" EXACT [GO:0071456]
synonym: "decreased RNA level during cellular response to zinc ion during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001117 ! decreased RNA level during vegetative growth
created_by: midori
creation_date: 2012-09-14T14:26:22Z

[Term]
id: FYPO:0001547
name: increased RNA level during cellular response to zinc ion starvation
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to zinc ion starvation is higher than normal. Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "increased mRNA level during cellular response to zinc ion starvation" NARROW [PomBase:mah]
synonym: "increased RNA accumulation during cellular response to zinc ion starvation" RELATED [PomBase:mah]
synonym: "increased RNA level during cellular response to zinc ion starvation during vegetative growth" EXACT [PomBase:mah]
synonym: "increased RNA level during cellular response to zinc starvation" EXACT [PomBase:mah]
is_a: FYPO:0000825 ! increased RNA level during vegetative growth
created_by: midori
creation_date: 2012-09-14T14:28:30Z

[Term]
id: FYPO:0001548
name: altered protein level during cellular response to hydrogen peroxide
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell differs from normal during a cellular response to hydrogen peroxide. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "abnormal protein level during cellular response to hydrogen peroxide" EXACT [PomBase:mah]
synonym: "altered cellular protein level during cellular response to hydrogen peroxide during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001325 ! altered protein level during vegetative growth
created_by: midori
creation_date: 2012-09-14T14:32:40Z

[Term]
id: FYPO:0001549
name: altered protein level during cellular response to hypoxia
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell differs from normal during a cellular response to hypoxia. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "abnormal protein level during cellular response to hypoxia" EXACT [PomBase:mah]
synonym: "altered cellular protein level during cellular response to hypoxia during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001325 ! altered protein level during vegetative growth
created_by: midori
creation_date: 2012-09-14T14:34:37Z

[Term]
id: FYPO:0001550
name: altered protein level during cellular response to zinc ion
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell differs from normal during a cellular response to zinc ions. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "abnormal protein level during cellular response to zinc ion" EXACT [PomBase:mah]
synonym: "altered cellular protein level during cellular response to zinc ion during vegetative growth" EXACT [PomBase:mah]
synonym: "altered protein level during cellular response to zinc" EXACT [PomBase:mah]
is_a: FYPO:0001325 ! altered protein level during vegetative growth
created_by: midori
creation_date: 2012-09-14T14:36:13Z

[Term]
id: FYPO:0001551
name: increased protein level during cellular response to zinc ion starvation
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to zinc ion starvation is higher than normal. Total protein or a specific protein may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal translation or abnormal regulation of translation, but note that changes in protein levels may result from changes in protein stability or degradation as well as changes in protein synthesis.
synonym: "increased protein accumulation during cellular response to zinc ion starvation" RELATED [PomBase:mah]
synonym: "increased protein level during cellular response to zinc ion starvation during vegetative growth" EXACT [PomBase:mah]
synonym: "increased protein level during cellular response to zinc starvation" EXACT [GO:0071453]
is_a: FYPO:0001327 ! increased protein level during vegetative growth
created_by: midori
creation_date: 2012-09-14T14:37:37Z

[Term]
id: FYPO:0001552
name: increased cellular zinc level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of zinc ion measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular zinc ion level" EXACT [PomBase:mah]
synonym: "increased cellular zinc level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased zinc accumulation" RELATED [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-14T14:42:05Z

[Term]
id: FYPO:0001553
name: abnormal RNA processing
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which RNA processing is abnormal. RNA processing is the conversion of one or more primary RNA transcripts into one or more mature RNA molecules." [GO:0006396, PomBase:mah]
synonym: "abnormal RNA processing during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000142 ! gene expression phenotype
is_a: FYPO:0000294 ! RNA metabolism phenotype
is_a: FYPO:0001363 ! abnormal metabolic process during vegetative growth
created_by: midori
creation_date: 2012-09-14T15:07:19Z

[Term]
id: FYPO:0001554
name: abnormal tRNA processing
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which tRNA processing is abnormal. tRNA processing is the conversion a primary tRNA transcript into a mature tRNA molecules." [GO:0008033, PomBase:mah]
synonym: "abnormal tRNA processing during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001553 ! abnormal RNA processing
created_by: midori
creation_date: 2012-09-14T15:10:20Z

[Term]
id: FYPO:0001555
name: formation of abnormal tRNA processing intermediates
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the intermediate RNAs formed during tRNA processing differ from wild type in size." [PomBase:al, PomBase:mah]
comment: Note that the mature tRNA may be of normal or abnormal size.
synonym: "abnormal tRNA maturation intermediates" EXACT [PomBase:al]
synonym: "formation of abnormal tRNA processing intermediates during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001554 ! abnormal tRNA processing
created_by: midori
creation_date: 2012-09-14T15:12:24Z

[Term]
id: FYPO:0001556
name: excess nuclear envelope present
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which cells contain more nuclear envelope than normal. Excess nuclear envelopes may take the form of intranuclear membrane stacks or small cytoplasmic spheres that are attached to the nucleus, have double lipid bilayer membranes, and may structures resembling nuclear pores." [PMID:22156749, PomBase:mah]
synonym: "excess nuclear envelope present during vegetative growth" EXACT [PomBase:mah]
synonym: "increased nuclear envelope proliferation" RELATED [PMID:22156749, PomBase:vw]
synonym: "nuclear envelope present in greater amount" EXACT [PomBase:mah]
is_a: FYPO:0000769 ! abnormal nuclear envelope morphology
created_by: midori
creation_date: 2012-09-14T15:22:32Z

[Term]
id: FYPO:0001557
name: resistance to ethionine
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of ethionine than normal." [PomBase:mah]
comment: Note that a racemic mixture of D and L enantiomers of ethionine is usually used to test sensitivity or resistance.
synonym: "resistance to DL-ethionine" RELATED [PomBase:mah]
synonym: "resistance to ethionine during vegetative growth" EXACT [PomBase:mah]
synonym: "resistance to S-ethylhomocysteine" EXACT [CHEBI:68662, PomBase:mah]
synonym: "resistant to ethionine" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-09-14T16:15:57Z

[Term]
id: FYPO:0001558
name: decreased methionine import
def: "A cellular process phenotype in which the import of methionine into the cell occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased methionine import into cell" EXACT [PomBase:al]
synonym: "decreased methionine transport into cell" EXACT [PomBase:al]
synonym: "decreased methionine uptake" EXACT [GO:0036233]
synonym: "reduced methionine import" EXACT [PomBase:mah]
synonym: "reduced methionine uptake" EXACT [PomBase:vw]
is_a: FYPO:0001058 ! decreased amino acid import
created_by: midori
creation_date: 2012-09-14T16:32:14Z

[Term]
id: FYPO:0001559
name: normal methionine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methionine import into the cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal methionine import during vegetative growth" EXACT [PomBase:mah]
synonym: "normal methionine import into cell" EXACT [PomBase:al]
synonym: "normal methionine uptake" EXACT [GO:0043091]
is_a: FYPO:0001596 ! normal amino acid import
created_by: midori
creation_date: 2012-09-14T16:34:42Z

[Term]
id: FYPO:0001560
name: decreased cellular threonine level
alt_id: FYPO:0001614
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-threonine measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular L-threonine level" EXACT [PomBase:mah]
synonym: "decreased cellular threonine level" EXACT [PomBase:mah]
synonym: "decreased cellular threonine level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased level of threonine in cell" EXACT [PomBase:mah]
synonym: "decreased threonine accumulation" RELATED [PomBase:al]
synonym: "reduced cellular threonine level" EXACT [PomBase:mah]
synonym: "reduced level of threonine in cell" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-14T16:44:29Z

[Term]
id: FYPO:0001561
name: decreased cellular citrulline level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-citrulline measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular citrulline level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased cellular L-citrulline level" EXACT [PomBase:mah]
synonym: "decreased citrulline accumulation" RELATED [PomBase:al]
synonym: "reduced cellular citrulline level" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-14T16:45:19Z

[Term]
id: FYPO:0001562
name: decreased cellular histidine level
alt_id: FYPO:0001620
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-histidine measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular histidine level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased cellular L-histidine level" EXACT [PomBase:mah]
synonym: "decreased histidine accumulation" RELATED [PomBase:al]
synonym: "reduced cellular histidine level" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-14T16:46:05Z

[Term]
id: FYPO:0001563
name: decreased cellular glutamate level
alt_id: FYPO:0001615
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-glutamate measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular glutamate level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased cellular glutamic acid level" RELATED [PomBase:mah]
synonym: "decreased cellular L-glutamate level" EXACT [PomBase:mah]
synonym: "decreased glutamate accumulation" RELATED [PomBase:al]
synonym: "reduced cellular glutamate level" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-14T16:46:41Z

[Term]
id: FYPO:0001564
name: decreased cellular ornithine level
alt_id: FYPO:0001618
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-ornithine measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular L-ornithine level" EXACT [PomBase:mah]
synonym: "decreased cellular ornithine level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased ornithine accumulation" RELATED [PomBase:al]
synonym: "reduced cellular ornithine level" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-14T16:47:41Z

[Term]
id: FYPO:0001565
name: increased cellular threonine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-threonine measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular L-threonine level" EXACT [CHEBI:16856, PomBase:al]
synonym: "increased cellular threonine level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased threonine accumulation" RELATED [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-14T16:48:22Z

[Term]
id: FYPO:0001566
name: increased cellular citrulline level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-citrulline measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular citrulline level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased cellular L-citrulline level" EXACT [CHEBI:16856, PomBase:al]
synonym: "increased citrulline accumulation" RELATED [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-14T16:49:05Z

[Term]
id: FYPO:0001567
name: increased cellular histidine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-histidine measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular histidine level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased cellular L-histidine level" EXACT [CHEBI:16856, PomBase:al]
synonym: "increased histidine accumulation" RELATED [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-14T16:49:35Z

[Term]
id: FYPO:0001568
name: increased cellular glutamate level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-glutamate measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular glutamate level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased cellular L-glutamate level" EXACT [CHEBI:16856, PomBase:al]
synonym: "increased glutamate accumulation" RELATED [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-14T16:50:25Z

[Term]
id: FYPO:0001569
name: increased cellular ornithine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-ornithine measured in a cell is higher than normal." [PomBase:mah]
synonym: "increased cellular L-ornithine level" EXACT [CHEBI:16856, PomBase:al]
synonym: "increased cellular ornithine level during vegetative growth" EXACT [PomBase:mah]
synonym: "increased ornithine accumulation" RELATED [PomBase:mah]
is_a: FYPO:0001330 ! increased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-14T16:51:00Z

[Term]
id: FYPO:0001570
name: decreased cellular glutathione level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of glutathione (GSH) measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular glutathione level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased cellular GSH level" EXACT [CHEBI:16856, PomBase:al]
synonym: "decreased cellular L-gamma-glutamyl-L-cysteinylglycine level" EXACT [CHEBI:16856]
synonym: "decreased cellular reduced glutathione level" EXACT [CHEBI:16856, PomBase:al]
synonym: "decreased glutathione accumulation" RELATED [PomBase:mah]
synonym: "reduced cellular glutathione level" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-14T16:51:27Z

[Term]
id: FYPO:0001571
name: increased protein binding
def: "A molecular function phenotype in which the binding of one protein to another occurs to a greater extent than normal." [PomBase:mah]
comment: This term can be used for any protein-protein interaction that is affected by a mutation, whether or not the mutated gene product is one of the interacting proteins. We recommend noting which proteins were used in the assay when annotating to this term.
synonym: "increased protein-protein interaction" EXACT [PomBase:mah]
is_a: FYPO:0000704 ! abnormal protein binding
created_by: midori
creation_date: 2012-09-20T13:22:04Z

[Term]
id: FYPO:0001572
name: abolished cell population growth on methionine nitrogen source
def: "A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing L-methionine as the nitrogen source." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "abolished growth on methionine nitrogen source" BROAD [PomBase:mah]
synonym: "abolished methionine utilization" RELATED [PomBase:mah, PomBase:vw]
synonym: "abolished vegetative cell population growth on methionine nitrogen source" EXACT [PomBase:mah]
synonym: "cell population growth on methionine nitrogen source abolished" EXACT [PomBase:mah]
is_a: FYPO:0001575 ! abolished vegetative cell population growth
created_by: midori
creation_date: 2012-09-20T13:55:30Z

[Term]
id: FYPO:0001573
name: increased RNA level during cellular response to rapamycin
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to rapamycin is higher than normal. Total RNA or a specific RNA may be affected." [PomBase:mah]
comment: Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.
synonym: "increased mRNA level during cellular response to rapamycin" NARROW [PomBase:mah]
synonym: "increased RNA accumulation during cellular response to rapamycin" RELATED [PomBase:mah]
synonym: "increased RNA level during cellular response to rapamycin during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000825 ! increased RNA level during vegetative growth
created_by: midori
creation_date: 2012-09-20T14:11:44Z

[Term]
id: FYPO:0001574
name: abnormal bipolar mitotic spindle
def: "A cellular structure phenotype in which the mitotic spindle has two poles but is otherwise structurally abnormal." [PomBase:mah]
is_a: FYPO:0000338 ! abnormal mitotic spindle
created_by: midori
creation_date: 2012-09-20T14:36:56Z

[Term]
id: FYPO:0001575
name: abolished vegetative cell population growth
def: "A cellular process phenotype in which vegetative cell population growth does not occur, although cells remain viable." [PomBase:mah]
comment: This term's primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotations. Please consider using one of the more specific terms, which mention carbon or nitrogen sources, to annotate each phenotype, as cells that do not grow on any media would be considered inviable.
subset: qc_do_not_annotate
synonym: "vegetative cell population growth abolished" EXACT [PomBase:mah]
synonym: "vegetative population growth abolished" EXACT [PomBase:mah]
is_a: FYPO:0001355 ! decreased vegetative cell population growth
created_by: midori
creation_date: 2012-09-20T14:52:12Z

[Term]
id: FYPO:0001576
name: abolished cell population growth on dipeptide nitrogen source
def: "A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing a dipeptide such as Leu-Ala as the nitrogen source." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "abolished dipeptide utilization" RELATED [PomBase:mah, PomBase:vw]
synonym: "abolished vegetative cell population growth on dipeptide nitrogen source" EXACT [PomBase:mah]
synonym: "cell population growth on dipeptide nitrogen source abolished" EXACT [PomBase:mah]
is_a: FYPO:0001575 ! abolished vegetative cell population growth
created_by: midori
creation_date: 2012-09-20T15:01:27Z

[Term]
id: FYPO:0001577
name: abolished cell population growth on tetrapeptide nitrogen source
def: "A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing a tetrapeptide such as Leu-Ser-Lys-Leu as the nitrogen source." [PomBase:mah]
comment: Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.
synonym: "abolished growth on tetrapeptide nitrogen source" BROAD [PomBase:mah]
synonym: "abolished tetrapeptide utilization" RELATED [PomBase:mah, PomBase:vw]
synonym: "abolished vegetative cell population growth on tetrapeptide nitrogen source" EXACT [PomBase:mah]
synonym: "cell population growth on tetrapeptide nitrogen source abolished" EXACT [PomBase:mah]
is_a: FYPO:0001575 ! abolished vegetative cell population growth
created_by: midori
creation_date: 2012-09-20T15:03:18Z

[Term]
id: FYPO:0001578
name: normal cell population growth on dipeptide nitrogen source
def: "A vegetative cell population growth phenotype in which cells grow normally in a medium containing a dipeptide such as Leu-Ala as the nitrogen source." [PomBase:mah]
synonym: "normal dipeptide utilization" RELATED [PomBase:mah, PomBase:vw]
synonym: "normal growth on dipeptide nitrogen source" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on dipeptide nitrogen source" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-09-20T15:07:14Z

[Term]
id: FYPO:0001579
name: normal cell population growth on tetrapeptide nitrogen source
def: "A vegetative cell population growth phenotype in which cells grow normally in a medium containing a tetrapeptide such as Leu-Ser-Lys-Leu as the nitrogen source." [PomBase:mah]
synonym: "normal growth on tetrapeptide nitrogen source" BROAD [PomBase:mah]
synonym: "normal tetrapeptide utilization" RELATED [PomBase:mah, PomBase:vw]
synonym: "normal vegetative cell population growth on tetrapeptide nitrogen source" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-09-20T15:08:09Z

[Term]
id: FYPO:0001580
name: normal cell population growth on leucine nitrogen source
def: "A vegetative cell population growth phenotype in which cells grow normally in a medium containing leucine as the nitrogen source." [PomBase:mah]
synonym: "normal cell population growth on monomeric leucine nitrogen source" EXACT [PomBase:vw]
synonym: "normal growth on leucine nitrogen source" BROAD [PomBase:mah]
synonym: "normal leucine utilization" RELATED [PomBase:mah, PomBase:vw]
synonym: "normal monomeric leucine utilization" RELATED [PomBase:vw]
synonym: "normal vegetative cell population growth on leucine nitrogen source" EXACT [PomBase:mah]
is_a: FYPO:0001319 ! normal cellular process during vegetative growth
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-09-20T15:08:58Z

[Term]
id: FYPO:0001581
name: vacuolated
def: "A cellular structure phenotype observed in the vegetative growth phase of the life cycle in which vacuoles are more visible (usually by microscopy) than normal. A vacuolated phenotype may be due to the presence of more vacuoles in a cell than normal, or to vacuoles located nearer the cell surface (and hence more visible) than normal." [PomBase:mah]
comment: Also see 'abnormal vacuole morphology (FYPO:0000368)' and 'vacuoles present in greater numbers' (FYPO:0000952).
synonym: "vacuolated during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001322 ! abnormal subcellular structure during vegetative growth
created_by: midori
creation_date: 2012-09-20T15:57:31Z

[Term]
id: FYPO:0001582
name: normal cell population growth on glutathione
def: "A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing glutathione." [PomBase:mah]
synonym: "normal cell population growth in presence of glutathione" EXACT [PomBase:mah]
synonym: "normal cell population growth on GSH" EXACT [CHEBI:16856]
synonym: "normal cell population growth on L-gamma-glutamyl-L-cysteinylglycine" EXACT [CHEBI:16856]
synonym: "normal cell population growth on reduced glutathione" EXACT [CHEBI:16856]
synonym: "normal cellular response to glutathione" RELATED [PomBase:al, PomBase:mah]
synonym: "normal growth on glutathione" BROAD [PomBase:mah]
synonym: "normal vegetative cell population growth on glutathione" EXACT [PomBase:mah]
is_a: FYPO:0001357 ! normal vegetative cell population growth
created_by: midori
creation_date: 2012-09-20T16:02:56Z

[Term]
id: FYPO:0001583
name: resistance to lithium
def: "An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of lithium ions than normal." [PomBase:mah]
synonym: "resistance to lithium during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000126 ! increased resistance to chemical
created_by: midori
creation_date: 2012-09-21T15:24:01Z

[Term]
id: FYPO:0001584
name: abnormal protein localization to cell tip
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell tip is abnormal." [PomBase:mah]
comment: Encompasses both presence of proteins not normally found associated with chromatin and decreased levels or absence of proteins normally found there, and describes defects in a localization process. We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abnormal protein localisation to cell tip" EXACT [GO:0034504, PomBase:mah]
synonym: "abnormal protein localization to cell tip during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000443 ! abnormal protein localization during vegetative growth
created_by: midori
creation_date: 2012-09-21T15:26:12Z

[Term]
id: FYPO:0001585
name: abolished protein localization to cell tip
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell tip is abolished." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "abolished protein localisation to cell tip" EXACT [PomBase:mah]
synonym: "abolished protein localization to cell tip during vegetative growth" EXACT [PomBase:mah]
synonym: "protein localization to cell tip abolished" EXACT [PomBase:mah]
is_a: FYPO:0001584 ! abnormal protein localization to cell tip
created_by: midori
creation_date: 2012-09-21T15:26:25Z

[Term]
id: FYPO:0001586
name: decreased protein localization to cell tip
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell tip is decreased." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "decreased protein localisation to cell tip" EXACT [GO:0034504, PomBase:mah]
synonym: "decreased protein localization to cell tip during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced protein localization to nucleus" EXACT [PomBase:mah]
is_a: FYPO:0001584 ! abnormal protein localization to cell tip
created_by: midori
creation_date: 2012-09-21T15:26:32Z

[Term]
id: FYPO:0001587
name: normal protein localization to cell tip
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell tip is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
comment: We recommend noting which protein(s) were used in the assay when annotating to this term.
synonym: "normal protein localisation to cell tip" EXACT [PomBase:mah]
synonym: "normal protein localization to cell tip during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0000644 ! normal protein localization
created_by: midori
creation_date: 2012-09-21T15:26:58Z

[Term]
id: FYPO:0001588
name: decreased lysine import during nitrogen starvation
def: "A cellular process phenotype in which the import of lysine into the cell occurs to a lower extent than normal when the cell is subject to nitrogen starvation." [PomBase:mah]
synonym: "decreased lysine import into cell during nitrogen starvation" EXACT [PomBase:al]
synonym: "decreased lysine transport into cell during nitrogen starvation" EXACT [PomBase:al]
synonym: "decreased lysine uptake during nitrogen starvation" EXACT [GO:0036233]
synonym: "reduced lysine import during nitrogen starvation" EXACT [PomBase:mah]
is_a: FYPO:0001650 ! decreased lysine import
is_a: FYPO:0001652 ! abnormal lysine import during nitrogen starvation
created_by: midori
creation_date: 2012-09-27T11:07:56Z

[Term]
id: FYPO:0001589
name: decreased glutamate import during nitrogen starvation
def: "A cellular process phenotype in which the import of glutamate into the cell occurs to a lower extent than normal when the cell is subject to nitrogen starvation." [PomBase:mah]
synonym: "decreased glutamate import into cell during nitrogen starvation" EXACT [PomBase:al]
synonym: "decreased glutamate transport into cell during nitrogen starvation" EXACT [PomBase:al]
synonym: "decreased glutamate uptake during nitrogen starvation" EXACT [GO:0036233]
synonym: "reduced glutamate import during nitrogen starvation" EXACT [PomBase:mah]
is_a: FYPO:0001647 ! abnormal glutamate import during nitrogen starvation
is_a: FYPO:0001649 ! decreased glutamate import
created_by: midori
creation_date: 2012-09-27T11:08:38Z

[Term]
id: FYPO:0001590
name: decreased lysine import during vegetative growth
def: "A cellular process phenotype in which the import of lysine into the cell occurs to a lower extent than normal in the vegetative growth phase of the life cycle." [PomBase:mah]
synonym: "decreased L-lysine import during vegetative growth" NARROW [PomBase:mah]
synonym: "decreased lysine import into cell during vegetative growth" EXACT [PomBase:al]
synonym: "decreased lysine uptake during vegetative growth" EXACT [GO:0036232]
synonym: "reduced lysine import during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001360 ! decreased amino acid import during vegetative growth
is_a: FYPO:0001650 ! decreased lysine import
is_a: FYPO:0001653 ! abnormal lysine import during vegetative growth
created_by: midori
creation_date: 2012-09-27T11:36:23Z

[Term]
id: FYPO:0001591
name: decreased histidine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of histidine into the cell occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased histidine import during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased histidine import into cell" EXACT [PomBase:al]
synonym: "decreased histidine uptake" EXACT [GO:0036232]
synonym: "decreased L-histidine import" NARROW [PomBase:mah]
synonym: "reduced histidine import" EXACT [PomBase:mah]
is_a: FYPO:0001360 ! decreased amino acid import during vegetative growth
is_a: FYPO:0001655 ! abnormal histidine import
created_by: midori
creation_date: 2012-09-27T11:37:19Z

[Term]
id: FYPO:0001592
name: decreased arginine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of arginine into the cell occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased arginine import during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased arginine import into cell" EXACT [PomBase:al]
synonym: "decreased arginine uptake" EXACT [GO:0036232]
synonym: "decreased L-arginine import" NARROW [PomBase:mah]
synonym: "reduced arginine import" EXACT [PomBase:mah]
is_a: FYPO:0001360 ! decreased amino acid import during vegetative growth
is_a: FYPO:0001654 ! abnormal arginine import
created_by: midori
creation_date: 2012-09-27T11:59:09Z

[Term]
id: FYPO:0001593
name: decreased valine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of valine into the cell occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased L-valine import" NARROW [PomBase:mah]
synonym: "decreased valine import during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased valine import into cell" EXACT [PomBase:al]
synonym: "decreased valine uptake" EXACT [GO:0036232]
synonym: "reduced valine import" EXACT [PomBase:mah]
is_a: FYPO:0001360 ! decreased amino acid import during vegetative growth
is_a: FYPO:0001658 ! abnormal valine import
created_by: midori
creation_date: 2012-09-27T11:59:59Z

[Term]
id: FYPO:0001594
name: decreased asparagine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of asparagine into the cell occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased asparagine import during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased asparagine import into cell" EXACT [PomBase:al]
synonym: "decreased asparagine uptake" EXACT [GO:0036232]
synonym: "decreased L-asparagine import" NARROW [PomBase:mah]
synonym: "reduced asparagine import" EXACT [PomBase:mah]
is_a: FYPO:0001360 ! decreased amino acid import during vegetative growth
is_a: FYPO:0001656 ! abnormal asparagine import
created_by: midori
creation_date: 2012-09-27T12:00:40Z

[Term]
id: FYPO:0001595
name: decreased serine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of serine into the cell occurs to a lower extent than normal." [PomBase:mah]
synonym: "decreased L-serine import" NARROW [PomBase:mah]
synonym: "decreased serine import during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased serine import into cell" EXACT [PomBase:al]
synonym: "decreased serine uptake" EXACT [GO:0036232]
synonym: "reduced serine import" EXACT [PomBase:mah]
is_a: FYPO:0001360 ! decreased amino acid import during vegetative growth
is_a: FYPO:0001657 ! abnormal serine import
created_by: midori
creation_date: 2012-09-27T12:01:24Z

[Term]
id: FYPO:0001596
name: normal amino acid import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which amino acid import is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal amino acid import during vegetative growth" EXACT [PomBase:mah]
synonym: "normal amino acid import into cell" EXACT [PomBase:al]
synonym: "normal amino acid uptake" EXACT [GO:0043090]
is_a: FYPO:0001071 ! normal transport
created_by: midori
creation_date: 2012-09-27T12:17:29Z

[Term]
id: FYPO:0001597
name: normal valine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which valine import is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal L-valine import" NARROW [PomBase:mah]
synonym: "normal valine import during vegetative growth" EXACT [PomBase:mah]
synonym: "normal valine import into cell" EXACT [PomBase:al]
synonym: "normal valine uptake" EXACT [PomBase:mah]
is_a: FYPO:0001596 ! normal amino acid import
created_by: midori
creation_date: 2012-09-27T12:22:29Z

[Term]
id: FYPO:0001598
name: normal glutamine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which glutamine import is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal glutamine import during vegetative growth" EXACT [PomBase:mah]
synonym: "normal glutamine import into cell" EXACT [PomBase:al]
synonym: "normal glutamine uptake" EXACT [PomBase:mah]
synonym: "normal L-glutamine import" NARROW [PomBase:mah]
is_a: FYPO:0001596 ! normal amino acid import
created_by: midori
creation_date: 2012-09-27T12:23:11Z

[Term]
id: FYPO:0001599
name: normal asparagine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which asparagine import is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal asparagine import during vegetative growth" EXACT [PomBase:mah]
synonym: "normal asparagine import into cell" EXACT [PomBase:al]
synonym: "normal asparagine uptake" EXACT [PomBase:mah]
synonym: "normal L-asparagine import" NARROW [PomBase:mah]
is_a: FYPO:0001596 ! normal amino acid import
created_by: midori
creation_date: 2012-09-27T12:23:36Z

[Term]
id: FYPO:0001600
name: normal isoleucine import
def: "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which isoleucine import is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal isoleucine import during vegetative growth" EXACT [PomBase:mah]
synonym: "normal isoleucine import into cell" EXACT [PomBase:al]
synonym: "normal isoleucine uptake" EXACT [PomBase:mah]
synonym: "normal L-isoleucine import" NARROW [PomBase:mah]
is_a: FYPO:0001596 ! normal amino acid import
created_by: midori
creation_date: 2012-09-27T12:24:12Z

[Term]
id: FYPO:0001601
name: altered level of substance in vacuole
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in the vacuole differs from normal." [PomBase:mah]
synonym: "abnormal level of substance in vacuole" EXACT [PomBase:mah]
synonym: "abnormal level of substance in vacuole during vegetative growth" EXACT [PomBase:mah]
synonym: "abnormal vacuolar level of substance" EXACT [PomBase:mah]
synonym: "altered vacuolar level of substance" EXACT [PomBase:mah]
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
is_a: FYPO:0001323 ! altered level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T13:06:05Z

[Term]
id: FYPO:0001602
name: decreased level of substance in vacuole
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in the vacuole is lower than normal." [PomBase:mah]
synonym: "decreased level of substance in vacuole during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased vacuolar level of substance" EXACT [PomBase:mah]
synonym: "reduced level of substance in vacuole" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
is_a: FYPO:0001601 ! altered level of substance in vacuole
created_by: midori
creation_date: 2012-09-27T13:07:26Z

[Term]
id: FYPO:0001603
name: normal level of substance in vacuole
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of substance in vacuole during vegetative growth" EXACT [PomBase:mah]
synonym: "normal vacuolar level of substance" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2012-09-27T13:07:41Z

[Term]
id: FYPO:0001604
name: altered level of substance in cytosol
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in the cytosol differs from normal." [PomBase:mah]
synonym: "abnormal cytosolic level of substance" EXACT [PomBase:mah]
synonym: "abnormal level of substance in cytosol" EXACT [PomBase:mah]
synonym: "abnormal level of substance in cytosol during vegetative growth" EXACT [PomBase:mah]
synonym: "altered cytosolic level of substance" EXACT [PomBase:mah]
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
is_a: FYPO:0001323 ! altered level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T13:17:34Z

[Term]
id: FYPO:0001605
name: decreased level of substance in cytosol
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in the cytosol is lower than normal." [PomBase:mah]
synonym: "decreased cytosolic level of substance" EXACT [PomBase:mah]
synonym: "decreased level of substance in cytosol during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced level of substance in cytosol" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
is_a: FYPO:0001604 ! altered level of substance in cytosol
created_by: midori
creation_date: 2012-09-27T13:18:39Z

[Term]
id: FYPO:0001606
name: normal level of substance in cytosol
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in the cytosol is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cytosolic level of substance" EXACT [PomBase:mah]
synonym: "normal level of substance in cytosol during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
is_a: FYPO:0001321 ! cellular structure phenotype during vegetative growth
created_by: midori
creation_date: 2012-09-27T13:19:00Z

[Term]
id: FYPO:0001607
name: decreased vacuolar aspartate level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-aspartate measured in the vacuole is lower than normal." [PomBase:mah]
synonym: "decreased level of aspartate in vacuole" EXACT [PomBase:mah]
synonym: "decreased vacuolar aspartate level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased vacuolar aspartic acid level" RELATED [PomBase:mah]
synonym: "decreased vacuolar L-aspartate level" EXACT [PomBase:mah]
synonym: "reduced level of aspartate in vacuole" EXACT [PomBase:mah]
synonym: "reduced vacuolar aspartate level" EXACT [PomBase:mah]
is_a: FYPO:0001602 ! decreased level of substance in vacuole
is_a: FYPO:0001613 ! decreased cellular aspartate level
created_by: midori
creation_date: 2012-09-27T13:35:58Z

[Term]
id: FYPO:0001608
name: decreased vacuolar glutamate level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-glutamate measured in the vacuole is lower than normal." [PomBase:mah]
synonym: "decreased level of glutamate in vacuole" EXACT [PomBase:mah]
synonym: "decreased vacuolar glutamate level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased vacuolar glutamic acid level" RELATED [PomBase:mah]
synonym: "decreased vacuolar L-glutamate level" EXACT [PomBase:mah]
synonym: "reduced level of glutamate in vacuole" EXACT [PomBase:mah]
synonym: "reduced vacuolar glutamate level" EXACT [PomBase:mah]
is_a: FYPO:0001563 ! decreased cellular glutamate level
is_a: FYPO:0001602 ! decreased level of substance in vacuole
created_by: midori
creation_date: 2012-09-27T13:37:52Z

[Term]
id: FYPO:0001609
name: decreased vacuolar ornithine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-ornithine measured in the vacuole is lower than normal." [PomBase:mah]
synonym: "decreased level of ornithine in vacuole" EXACT [PomBase:mah]
synonym: "decreased vacuolar L-ornithine level" EXACT [PomBase:mah]
synonym: "decreased vacuolar ornithine level during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced level of ornithine in vacuole" EXACT [PomBase:mah]
synonym: "reduced vacuolar ornithine level" EXACT [PomBase:mah]
is_a: FYPO:0001564 ! decreased cellular ornithine level
is_a: FYPO:0001602 ! decreased level of substance in vacuole
created_by: midori
creation_date: 2012-09-27T13:38:40Z

[Term]
id: FYPO:0001610
name: decreased vacuolar lysine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-lysine measured in the vacuole is lower than normal." [PomBase:mah]
synonym: "decreased level of lysine in vacuole" EXACT [PomBase:mah]
synonym: "decreased vacuolar L-lysine level" EXACT [PomBase:mah]
synonym: "decreased vacuolar lysine level during vegetative growth" EXACT [PomBase:mah]
synonym: "reduced level of lysine in vacuole" EXACT [PomBase:mah]
synonym: "reduced vacuolar lysine level" EXACT [PomBase:mah]
is_a: FYPO:0001602 ! decreased level of substance in vacuole
is_a: FYPO:0001619 ! decreased cellular lysine level
created_by: midori
creation_date: 2012-09-27T13:40:52Z

[Term]
id: FYPO:0001611
name: decreased vacuolar histidine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-histidine measured in the vacuole is lower than normal." [PomBase:mah]
synonym: "decreased level of histidine in vacuole" EXACT [PomBase:mah]
synonym: "decreased vacuolar histidine level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased vacuolar L-histidine level" EXACT [PomBase:mah]
synonym: "reduced level of histidine in vacuole" EXACT [PomBase:mah]
synonym: "reduced vacuolar histidine level" EXACT [PomBase:mah]
is_a: FYPO:0001562 ! decreased cellular histidine level
is_a: FYPO:0001602 ! decreased level of substance in vacuole
created_by: midori
creation_date: 2012-09-27T13:41:34Z

[Term]
id: FYPO:0001612
name: decreased vacuolar arginine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-arginine measured in the vacuole is lower than normal." [PomBase:mah]
synonym: "decreased level of arginine in vacuole" EXACT [PomBase:mah]
synonym: "decreased vacuolar arginine level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased vacuolar L-arginine level" EXACT [PomBase:mah]
synonym: "reduced level of arginine in vacuole" EXACT [PomBase:mah]
synonym: "reduced vacuolar arginine level" EXACT [PomBase:mah]
is_a: FYPO:0001602 ! decreased level of substance in vacuole
is_a: FYPO:0001621 ! decreased cellular arginine level
created_by: midori
creation_date: 2012-09-27T13:42:12Z

[Term]
id: FYPO:0001613
name: decreased cellular aspartate level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-aspartate measured in the cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular aspartate level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased cellular aspartic acid level" RELATED [PomBase:mah]
synonym: "decreased cellular L-aspartate level" EXACT [PomBase:mah]
synonym: "decreased cellular level aspartate level" EXACT [PomBase:mah]
synonym: "decreased level of aspartate in cell" EXACT [PomBase:mah]
synonym: "reduced cellular aspartate level" EXACT [PomBase:mah]
synonym: "reduced level of aspartate in cell" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T13:57:23Z

[Term]
id: FYPO:0001616
name: decreased cellular valine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-valine measured in the cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular L-valine level" EXACT [PomBase:mah]
synonym: "decreased cellular valine level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased level of valine in cell" EXACT [PomBase:mah]
synonym: "reduced cellular valine level" EXACT [PomBase:mah]
synonym: "reduced level of valine in cell" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T14:00:08Z

[Term]
id: FYPO:0001617
name: decreased cellular isoleucine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-isoleucine measured in the cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular isoleucine level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased cellular L-isoleucine level" EXACT [PomBase:mah]
synonym: "decreased level of isoleucine in cell" EXACT [PomBase:mah]
synonym: "reduced cellular isoleucine level" EXACT [PomBase:mah]
synonym: "reduced level of isoleucine in cell" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T14:02:19Z

[Term]
id: FYPO:0001619
name: decreased cellular lysine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-lysine measured in the cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular L-lysine level" EXACT [PomBase:mah]
synonym: "decreased cellular lysine level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased level of lysine in cell" EXACT [PomBase:mah]
synonym: "reduced cellular lysine level" EXACT [PomBase:mah]
synonym: "reduced level of lysine in cell" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T14:03:22Z

[Term]
id: FYPO:0001621
name: decreased cellular arginine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-arginine measured in the cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular arginine level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased cellular L-arginine level" EXACT [PomBase:mah]
synonym: "decreased level of arginine in cell" EXACT [PomBase:mah]
synonym: "reduced cellular arginine level" EXACT [PomBase:mah]
synonym: "reduced level of arginine in cell" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T14:04:37Z

[Term]
id: FYPO:0001622
name: normal vacuolar threonine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-threonine measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of threonine in vacuole" EXACT [PomBase:mah]
synonym: "normal vacuolar L-threonine level" EXACT [PomBase:mah]
synonym: "normal vacuolar threonine level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001603 ! normal level of substance in vacuole
created_by: midori
creation_date: 2012-09-27T14:07:43Z

[Term]
id: FYPO:0001623
name: normal vacuolar serine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-serine measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of serine in vacuole" EXACT [PomBase:mah]
synonym: "normal vacuolar L-serine level" EXACT [PomBase:mah]
synonym: "normal vacuolar serine level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001603 ! normal level of substance in vacuole
is_a: FYPO:0001635 ! normal cellular serine level
created_by: midori
creation_date: 2012-09-27T14:15:13Z

[Term]
id: FYPO:0001624
name: normal vacuolar asparagine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-asparagine measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of asparagine in vacuole" EXACT [PomBase:mah]
synonym: "normal vacuolar asparagine level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal vacuolar L-asparagine level" EXACT [PomBase:mah]
is_a: FYPO:0001603 ! normal level of substance in vacuole
created_by: midori
creation_date: 2012-09-27T14:15:39Z

[Term]
id: FYPO:0001625
name: normal vacuolar glutamine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-glutamine measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of glutamine in vacuole" EXACT [PomBase:mah]
synonym: "normal vacuolar glutamine level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal vacuolar L-glutamine level" EXACT [PomBase:mah]
is_a: FYPO:0001603 ! normal level of substance in vacuole
is_a: FYPO:0001636 ! normal cellular glutamine level
created_by: midori
creation_date: 2012-09-27T14:16:08Z

[Term]
id: FYPO:0001626
name: normal vacuolar glycine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of glycine measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of glycine in vacuole" EXACT [PomBase:mah]
synonym: "normal vacuolar glycine level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001603 ! normal level of substance in vacuole
is_a: FYPO:0001637 ! normal cellular glycine level
created_by: midori
creation_date: 2012-09-27T14:16:32Z

[Term]
id: FYPO:0001627
name: normal vacuolar alanine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-alanine measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of alanine in vacuole" EXACT [PomBase:mah]
synonym: "normal vacuolar alanine level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal vacuolar L-alanine level" EXACT [PomBase:mah]
is_a: FYPO:0001603 ! normal level of substance in vacuole
is_a: FYPO:0001638 ! normal cellular alanine level
created_by: midori
creation_date: 2012-09-27T14:17:07Z

[Term]
id: FYPO:0001628
name: normal vacuolar valine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-valine measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of valine in vacuole" EXACT [PomBase:mah]
synonym: "normal vacuolar L-valine level" EXACT [PomBase:mah]
synonym: "normal vacuolar valine level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001603 ! normal level of substance in vacuole
created_by: midori
creation_date: 2012-09-27T14:18:04Z

[Term]
id: FYPO:0001629
name: normal vacuolar methionine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-methionine measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of methionine in vacuole" EXACT [PomBase:mah]
synonym: "normal vacuolar L-methionine level" EXACT [PomBase:mah]
synonym: "normal vacuolar methionine level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001603 ! normal level of substance in vacuole
is_a: FYPO:0001639 ! normal cellular methionine level
created_by: midori
creation_date: 2012-09-27T14:18:27Z

[Term]
id: FYPO:0001630
name: normal vacuolar isoleucine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-isoleucine measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of isoleucine in vacuole" EXACT [PomBase:mah]
synonym: "normal vacuolar isoleucine level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal vacuolar L-isoleucine level" EXACT [PomBase:mah]
is_a: FYPO:0001603 ! normal level of substance in vacuole
created_by: midori
creation_date: 2012-09-27T14:18:49Z

[Term]
id: FYPO:0001631
name: normal vacuolar leucine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-leucine measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of leucine in vacuole" EXACT [PomBase:mah]
synonym: "normal vacuolar L-leucine level" EXACT [PomBase:mah]
synonym: "normal vacuolar leucine level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001603 ! normal level of substance in vacuole
is_a: FYPO:0001640 ! normal cellular leucine level
created_by: midori
creation_date: 2012-09-27T14:19:17Z

[Term]
id: FYPO:0001632
name: normal vacuolar tyrosine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-tyrosine measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of tyrosine in vacuole" EXACT [PomBase:mah]
synonym: "normal vacuolar L-tyrosine level" EXACT [PomBase:mah]
synonym: "normal vacuolar tyrosine level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001603 ! normal level of substance in vacuole
is_a: FYPO:0001641 ! normal cellular tyrosine level
created_by: midori
creation_date: 2012-09-27T14:20:13Z

[Term]
id: FYPO:0001633
name: normal vacuolar phenylalanine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-phenylalanine measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of phenylalanine in vacuole" EXACT [PomBase:mah]
synonym: "normal vacuolar L-phenylalanine level" EXACT [PomBase:mah]
synonym: "normal vacuolar phenylalanine level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001603 ! normal level of substance in vacuole
is_a: FYPO:0001642 ! normal cellular phenylalanine level
created_by: midori
creation_date: 2012-09-27T14:20:37Z

[Term]
id: FYPO:0001634
name: normal vacuolar tryptophan level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of tryptophan measured in the vacuole is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal level of tryptophan in vacuole" EXACT [PomBase:mah]
synonym: "normal vacuolar tryptophan level during vegetative growth" EXACT [PomBase:mah]
is_a: FYPO:0001603 ! normal level of substance in vacuole
is_a: FYPO:0001643 ! normal cellular tryptophan level
created_by: midori
creation_date: 2012-09-27T14:21:05Z

[Term]
id: FYPO:0001635
name: normal cellular serine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-serine measured in the cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular L-serine level" EXACT [PomBase:mah]
synonym: "normal cellular serine level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal level of serine in cell" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T14:42:14Z

[Term]
id: FYPO:0001636
name: normal cellular glutamine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-glutamine measured in the cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular glutamine level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal cellular L-glutamine level" EXACT [PomBase:mah]
synonym: "normal level of glutamine in cell" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T14:43:22Z

[Term]
id: FYPO:0001637
name: normal cellular glycine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-glycine measured in the cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular glycine level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal cellular L-glycine level" EXACT [PomBase:mah]
synonym: "normal level of glycine in cell" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T14:43:46Z

[Term]
id: FYPO:0001638
name: normal cellular alanine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-alanine measured in the cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular alanine level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal cellular L-alanine level" EXACT [PomBase:mah]
synonym: "normal level of alanine in cell" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T14:44:07Z

[Term]
id: FYPO:0001639
name: normal cellular methionine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-methionine measured in the cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular L-methionine level" EXACT [PomBase:mah]
synonym: "normal cellular methionine level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal level of methionine in cell" EXACT [PomBase:mah]
is_a: FYPO:0001544 ! normal cellular sulfur level
created_by: midori
creation_date: 2012-09-27T14:44:34Z

[Term]
id: FYPO:0001640
name: normal cellular leucine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-leucine measured in the cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular L-leucine level" EXACT [PomBase:mah]
synonym: "normal cellular leucine level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal level of leucine in cell" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T14:44:59Z

[Term]
id: FYPO:0001641
name: normal cellular tyrosine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-tyrosine measured in the cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular L-tyrosine level" EXACT [PomBase:mah]
synonym: "normal cellular tyrosine level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal level of tyrosine in cell" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T14:45:39Z

[Term]
id: FYPO:0001642
name: normal cellular phenylalanine level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-phenylalanine measured in the cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular L-phenylalanine level" EXACT [PomBase:mah]
synonym: "normal cellular phenylalanine level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal level of phenylalanine in cell" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T14:46:14Z

[Term]
id: FYPO:0001643
name: normal cellular tryptophan level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of tryptophan measured in the cell is normal (i.e. indistinguishable from wild type)." [PomBase:mah]
synonym: "normal cellular tryptophan level during vegetative growth" EXACT [PomBase:mah]
synonym: "normal level of tryptophan in cell" EXACT [PomBase:mah]
is_a: FYPO:0001316 ! normal level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T14:46:41Z

[Term]
id: FYPO:0001644
name: decreased cellular lithium level
def: "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of lithium ion measured in a cell is lower than normal." [PomBase:mah]
synonym: "decreased cellular lithium ion level" EXACT [PomBase:mah]
synonym: "decreased cellular lithium level during vegetative growth" EXACT [PomBase:mah]
synonym: "decreased lithium accumulation" RELATED [PomBase:al]
synonym: "reduced cellular lithium level" EXACT [PomBase:mah]
is_a: FYPO:0001329 ! decreased level of substance in cell during vegetative growth
created_by: midori
creation_date: 2012-09-27T14:48:30Z

[Term]
id: FYPO:0001645
name: decreased protein binding
def: "A molecular function phenotype in which the binding of one protein to another occurs to a lower extent than normal." [PomBase:mah]
comment: This term can be used for any protein-protein interaction that is affected by a mutation, whether or not the mutated gene product is one of the interacting proteins. We recommend noting which proteins were used in the assay when annotating to this term.
synonym: "decreased protein-protein interaction" EXACT [PomBase:mah]
synonym: "reduced protein binding" EXACT [PomBase:mah]
is_a: FYPO:0000704 ! abnormal protein binding
created_by: midori
creation_date: 2012-09-27T14:50:07Z

[Term]
id: FYPO:0001646
name: abnormal glutamate import
def: "A cellular process phenotype in which the import of glutamate into the cell is abnormal." [PomBase:mah]
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_manually_annotate
is_a: FYPO:0001057 ! abnormal amino acid import
created_by: midori
creation_date: 2012-09-27T15:50:49Z

[Term]
id: FYPO:0001647
name: abnormal glutamate import during nitrogen starvation
def: "A cellular process phenotype in which the import of L-glutamate into the cell is abnormal when the cell is subject to nitrogen starvation." [PomBase:mah]
synonym: "abnormal glutamate import into cell during nitrogen starvation" EXACT [PomBase:al]
synonym: "abnormal glutamate uptake during nitrogen starvation" EXACT [GO:0051938]
synonym: "abnormal L-glutamate import during nitrogen starvation" NARROW [PomBase:mah]
is_a: FYPO:0001646 ! abnormal glutamate import
is_a: FYPO:0001648 ! ab