counts of all annotation by type: count | cv_name --------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | pathway 27 | cat_act 76 | m_f_g 161 | genome_org 195 | subunit_composition 411 | EC numbers 445 | misc 458 | complementation 731 | PomGeneExRD 1005 | name_description 1326 | PomGeneExProt 1666 | sequence 1698 | warning 1862 | pombase_family_or_domain 3314 | mondo 5145 | PomBase gene characterisation status 9037 | PomGeneExRNA 11519 | biological_process 14499 | molecular_function 17605 | cellular_component 25225 | species_dist 33667 | gene_ex 67274 | PSI-MOD 68203 | PomBase gene products 191765 | fission_yeast_phenotype (27 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Inferred from Direct Assay | PSI-MOD | 3282 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Traceable Author Statement | PSI-MOD | 1 Unknown | PSI-MOD | 43 author statement without traceable support used in manual assertion | PSI-MOD | 1 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 curator inference used in manual assertion | PSI-MOD | 21 differential hybridization evidence | PSI-MOD | 1287 experimental evidence | PSI-MOD | 8138 experimental evidence used in manual assertion | PSI-MOD | 76 mass spectrometry evidence | PSI-MOD | 8352 match to sequence model evidence used in manual assertion | PSI-MOD | 1315 neural network method evidence used in manual assertion | PSI-MOD | 47 sequence similarity evidence used in manual assertion | PSI-MOD | 263 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44344 Western blot evidence | PomGeneExProt | 90 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence | PomGeneExProt | 15 northern assay evidence used in manual assertion | PomGeneExProt | 5 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 136 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 437 ribosome profiling evidence | PomGeneExRD | 731 Northern assay evidence | PomGeneExRNA | 124 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3987 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3593 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 149 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 879 Inferred from Biological aspect of Ancestor | biological_process | 2408 Inferred from Direct Assay | biological_process | 656 Inferred from Electronic Annotation | biological_process | 301 Inferred from Experiment | biological_process | 755 Inferred from Expression Pattern | biological_process | 7 Inferred from Genetic Interaction | biological_process | 528 Inferred from Mutant Phenotype | biological_process | 3707 Inferred from Physical Interaction | biological_process | 57 Inferred from Sequence Model | biological_process | 120 Inferred from Sequence Orthology | biological_process | 1306 Inferred from Sequence or Structural Similarity | biological_process | 367 Non-traceable Author Statement | biological_process | 283 Traceable Author Statement | biological_process | 145 Inferred by Curator | cellular_component | 544 Inferred from Biological aspect of Ancestor | cellular_component | 1892 Inferred from Direct Assay | cellular_component | 6118 Inferred from Electronic Annotation | cellular_component | 205 Inferred from Experiment | cellular_component | 513 Inferred from Genetic Interaction | cellular_component | 45 Inferred from Mutant Phenotype | cellular_component | 59 Inferred from Physical Interaction | cellular_component | 289 Inferred from Sequence Model | cellular_component | 57 Inferred from Sequence Orthology | cellular_component | 802 Inferred from Sequence or Structural Similarity | cellular_component | 233 Inferred from high throughput direct assay | cellular_component | 6661 Non-traceable Author Statement | cellular_component | 87 Traceable Author Statement | cellular_component | 100 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2577 Chromatography evidence | fission_yeast_phenotype | 82 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1251 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Enzyme assay data | fission_yeast_phenotype | 2507 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Flow cytometry data | fission_yeast_phenotype | 2201 Immunolocalization experiment data | fission_yeast_phenotype | 33 Northern assay evidence | fission_yeast_phenotype | 117 Other | fission_yeast_phenotype | 2492 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 39 Plasmid maintenance assay evidence | fission_yeast_phenotype | 85 Substance quantification | fission_yeast_phenotype | 1237 Western blot assay | fission_yeast_phenotype | 4952 cell growth assay evidence | fission_yeast_phenotype | 116558 cell viability assay evidence | fission_yeast_phenotype | 2163 competitive growth assay evidence | fission_yeast_phenotype | 1195 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2606 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence | fission_yeast_phenotype | 39750 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 1273 reporter gene assay evidence | fission_yeast_phenotype | 3567 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 5085 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 RNA detection assay evidence | gene_ex | 2 experimental evidence | gene_ex | 19958 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 microscopy evidence | gene_ex | 9 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 201 Inferred from Biological aspect of Ancestor | molecular_function | 2368 Inferred from Direct Assay | molecular_function | 2119 Inferred from Electronic Annotation | molecular_function | 1425 Inferred from Experiment | molecular_function | 1100 Inferred from Genetic Interaction | molecular_function | 127 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 1057 Inferred from Physical Interaction | molecular_function | 2385 Inferred from Sequence Model | molecular_function | 944 Inferred from Sequence Orthology | molecular_function | 683 Inferred from Sequence or Structural Similarity | molecular_function | 288 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 108 Traceable Author Statement | molecular_function | 141 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 Traceable Author Statement | pombase_family_or_domain | 5 Inferred from Experiment | sequence | 8 author statement supported by traceable reference used in manual assertion | sequence | 1 curator inference used in manual assertion | sequence | 3 direct assay evidence used in manual assertion | sequence | 7 experimental evidence used in manual assertion | sequence | 2 match to sequence model evidence | sequence | 939 match to sequence model evidence used in manual assertion | sequence | 224 mutant phenotype evidence used in manual assertion | sequence | 10 sequence similarity evidence | sequence | 25 sequence similarity evidence used in manual assertion | sequence | 372 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 65 (144 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- author statement without traceable support used in manual assertion | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 author statement supported by traceable reference used in manual assertion | sequence | 1 differential hybridization evidence | PomGeneExRNA | 1 Non-traceable Author Statement | complementation | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PomGeneExProt | 1 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 experimental evidence used in manual assertion | sequence | 2 Inferred from Physical Interaction | misc | 2 RNA detection assay evidence | gene_ex | 2 Inferred from Sequence Model | PSI-MOD | 2 curator inference used in manual assertion | sequence | 3 quantitative PCR | PomGeneExProt | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 Traceable Author Statement | pombase_family_or_domain | 5 immunofluorescence evidence | PomGeneExProt | 6 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 direct assay evidence used in manual assertion | sequence | 7 Inferred from Expression Pattern | biological_process | 7 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Other direct assay | fission_yeast_phenotype | 8 Inferred from Experiment | sequence | 8 microscopy evidence | gene_ex | 9 mutant phenotype evidence used in manual assertion | sequence | 10 fusion protein localization evidence | PomGeneExProt | 11 Inferred from Sequence or Structural Similarity | genome_org | 11 reporter gene assay evidence | PomGeneExRNA | 12 western blot evidence used in manual assertion | PomGeneExRNA | 13 in situ hybridization assay evidence | gene_ex | 14 microscopy evidence | PomGeneExProt | 15 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 curator inference used in manual assertion | PSI-MOD | 21 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sequence similarity evidence | sequence | 25 Immunolocalization experiment data | fission_yeast_phenotype | 33 Particle size and count assay | fission_yeast_phenotype | 39 Inferred from Sequence or Structural Similarity | m_f_g | 41 Unknown | PSI-MOD | 43 Inferred from Genetic Interaction | cellular_component | 45 neural network method evidence used in manual assertion | PSI-MOD | 47 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Inferred from Sequence Model | cellular_component | 57 Inferred from Physical Interaction | biological_process | 57 RNA protection assay evidence | PomGeneExRNA | 58 Inferred from Mutant Phenotype | cellular_component | 59 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Inferred from Sequence or Structural Similarity | warning | 65 experimental evidence used in manual assertion | PSI-MOD | 76 Chromatography evidence | fission_yeast_phenotype | 82 Plasmid maintenance assay evidence | fission_yeast_phenotype | 85 Non-traceable Author Statement | cellular_component | 87 Western blot evidence | PomGeneExProt | 90 Traceable Author Statement | cellular_component | 100 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Non-traceable Author Statement | molecular_function | 108 Northern assay evidence | fission_yeast_phenotype | 117 Inferred from Sequence Model | biological_process | 120 Northern assay evidence | PomGeneExRNA | 124 Inferred from Genetic Interaction | molecular_function | 127 reporter gene assay evidence | PomGeneExProt | 136 Traceable Author Statement | molecular_function | 141 Traceable Author Statement | biological_process | 145 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 quantitative PCR | PomGeneExRNA | 149 experimental evidence | PomGeneExRNA | 198 Inferred by Curator | molecular_function | 201 Inferred from Electronic Annotation | cellular_component | 205 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 match to sequence model evidence used in manual assertion | sequence | 224 Inferred from Sequence or Structural Similarity | cellular_component | 233 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 sequence similarity evidence used in manual assertion | PSI-MOD | 263 Non-traceable Author Statement | biological_process | 283 Inferred from Sequence or Structural Similarity | molecular_function | 288 Inferred from Physical Interaction | cellular_component | 289 Inferred from Electronic Annotation | biological_process | 301 Inferred from Sequence or Structural Similarity | biological_process | 367 sequence similarity evidence used in manual assertion | sequence | 372 western blot evidence used in manual assertion | PomGeneExProt | 437 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Experiment | cellular_component | 513 Inferred from Genetic Interaction | biological_process | 528 Inferred by Curator | cellular_component | 544 mass spectrometry evidence | PomGeneExProt | 614 Inferred from Direct Assay | biological_process | 656 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Sequence Orthology | molecular_function | 683 ribosome profiling evidence | PomGeneExRD | 731 Inferred from Experiment | biological_process | 755 northern assay evidence used in manual assertion | PomGeneExRNA | 796 Inferred from Sequence Orthology | cellular_component | 802 Inferred by Curator | biological_process | 879 match to sequence model evidence | sequence | 939 Inferred from Sequence Model | molecular_function | 944 Inferred from Mutant Phenotype | molecular_function | 1057 Inferred from Experiment | molecular_function | 1100 competitive growth assay evidence | fission_yeast_phenotype | 1195 Substance quantification | fission_yeast_phenotype | 1237 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1251 quantitative PCR | fission_yeast_phenotype | 1273 differential hybridization evidence | PSI-MOD | 1287 Inferred from Sequence Orthology | biological_process | 1306 match to sequence model evidence used in manual assertion | PSI-MOD | 1315 Inferred from Electronic Annotation | molecular_function | 1425 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Biological aspect of Ancestor | cellular_component | 1892 Inferred from Direct Assay | molecular_function | 2119 cell viability assay evidence | fission_yeast_phenotype | 2163 Flow cytometry data | fission_yeast_phenotype | 2201 Inferred from Biological aspect of Ancestor | molecular_function | 2368 Inferred from Physical Interaction | molecular_function | 2385 Inferred from Biological aspect of Ancestor | biological_process | 2408 Other | fission_yeast_phenotype | 2492 Enzyme assay data | fission_yeast_phenotype | 2507 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2577 gel electrophoresis evidence | fission_yeast_phenotype | 2606 Inferred from Direct Assay | PSI-MOD | 3282 reporter gene assay evidence | fission_yeast_phenotype | 3567 expression microarray evidence | PomGeneExRNA | 3593 Inferred from Mutant Phenotype | biological_process | 3707 RNA-sequencing evidence | PomGeneExRNA | 3987 Western blot assay | fission_yeast_phenotype | 4952 transcript expression level evidence | fission_yeast_phenotype | 5085 Inferred from Direct Assay | cellular_component | 6118 Inferred from high throughput direct assay | cellular_component | 6661 experimental evidence | PSI-MOD | 8138 mass spectrometry evidence | PSI-MOD | 8352 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 19958 microscopy evidence | fission_yeast_phenotype | 39750 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44344 cell growth assay evidence | fission_yeast_phenotype | 116558 (144 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2577 Chromatography evidence | fission_yeast_phenotype | 82 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1251 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Enzyme assay data | fission_yeast_phenotype | 2507 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Flow cytometry data | fission_yeast_phenotype | 2201 Immunolocalization experiment data | fission_yeast_phenotype | 33 Inferred by Curator | biological_process | 879 Inferred by Curator | cellular_component | 544 Inferred by Curator | molecular_function | 201 Inferred from Biological aspect of Ancestor | biological_process | 2408 Inferred from Biological aspect of Ancestor | cellular_component | 1892 Inferred from Biological aspect of Ancestor | molecular_function | 2368 Inferred from Direct Assay | PSI-MOD | 3282 Inferred from Direct Assay | biological_process | 656 Inferred from Direct Assay | cellular_component | 6118 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 2119 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 301 Inferred from Electronic Annotation | cellular_component | 205 Inferred from Electronic Annotation | molecular_function | 1425 Inferred from Experiment | biological_process | 755 Inferred from Experiment | cellular_component | 513 Inferred from Experiment | molecular_function | 1100 Inferred from Experiment | sequence | 8 Inferred from Expression Pattern | biological_process | 7 Inferred from Genetic Interaction | biological_process | 528 Inferred from Genetic Interaction | cellular_component | 45 Inferred from Genetic Interaction | molecular_function | 127 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3707 Inferred from Mutant Phenotype | cellular_component | 59 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 1057 Inferred from Physical Interaction | biological_process | 57 Inferred from Physical Interaction | cellular_component | 289 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2385 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 120 Inferred from Sequence Model | cellular_component | 57 Inferred from Sequence Model | molecular_function | 944 Inferred from Sequence Orthology | biological_process | 1306 Inferred from Sequence Orthology | cellular_component | 802 Inferred from Sequence Orthology | molecular_function | 683 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Inferred from Sequence or Structural Similarity | biological_process | 367 Inferred from Sequence or Structural Similarity | cellular_component | 233 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 288 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 65 Inferred from high throughput direct assay | cellular_component | 6661 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | biological_process | 283 Non-traceable Author Statement | cellular_component | 87 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 108 Northern assay evidence | PomGeneExRNA | 124 Northern assay evidence | fission_yeast_phenotype | 117 Other | fission_yeast_phenotype | 2492 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 39 Plasmid maintenance assay evidence | fission_yeast_phenotype | 85 RNA detection assay evidence | gene_ex | 2 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3987 Substance quantification | fission_yeast_phenotype | 1237 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | biological_process | 145 Traceable Author Statement | cellular_component | 100 Traceable Author Statement | molecular_function | 141 Traceable Author Statement | pombase_family_or_domain | 5 Unknown | PSI-MOD | 43 Western blot assay | fission_yeast_phenotype | 4952 Western blot evidence | PomGeneExProt | 90 author statement supported by traceable reference used in manual assertion | sequence | 1 author statement without traceable support used in manual assertion | PSI-MOD | 1 cell growth assay evidence | fission_yeast_phenotype | 116558 cell viability assay evidence | fission_yeast_phenotype | 2163 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 competitive growth assay evidence | fission_yeast_phenotype | 1195 curator inference used in manual assertion | PSI-MOD | 21 curator inference used in manual assertion | sequence | 3 differential hybridization evidence | PSI-MOD | 1287 differential hybridization evidence | PomGeneExRNA | 1 direct assay evidence used in manual assertion | sequence | 7 experimental evidence | PSI-MOD | 8138 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 19958 experimental evidence used in manual assertion | PSI-MOD | 76 experimental evidence used in manual assertion | sequence | 2 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3593 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2606 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 mass spectrometry evidence | PSI-MOD | 8352 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 match to sequence model evidence | sequence | 939 match to sequence model evidence used in manual assertion | PSI-MOD | 1315 match to sequence model evidence used in manual assertion | sequence | 224 microscopy evidence | PomGeneExProt | 15 microscopy evidence | fission_yeast_phenotype | 39750 microscopy evidence | gene_ex | 9 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 mutant phenotype evidence used in manual assertion | sequence | 10 neural network method evidence used in manual assertion | PSI-MOD | 47 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 149 quantitative PCR | fission_yeast_phenotype | 1273 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 136 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 3567 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 731 sequence similarity evidence | sequence | 25 sequence similarity evidence used in manual assertion | PSI-MOD | 263 sequence similarity evidence used in manual assertion | sequence | 372 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 5085 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44344 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 437 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (144 rows) total: count -------- 457369 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 8 | sequence 84 | PomGeneExProt 471 | PomGeneExRNA 2369 | PSI-MOD 4774 | biological_process 5258 | molecular_function 6023 | cellular_component 42362 | PomBase annotation extension terms 77675 | fission_yeast_phenotype (9 rows) total ------- 96662 (1 row)