counts of all annotation by type: count | cv_name --------+-------------------------------------- 6 | external_link 22 | ex_tools 23 | pathway 26 | cat_act 76 | m_f_g 162 | genome_org 196 | subunit_composition 406 | EC numbers 445 | misc 465 | complementation 808 | PomGeneExRD 1011 | name_description 1663 | sequence 1705 | warning 1864 | pombase_family_or_domain 3928 | mondo 4331 | PomGeneExProt 5146 | PomBase gene characterisation status 9450 | PomGeneExRNA 11634 | biological_process 17780 | cellular_component 18930 | molecular_function 25229 | species_dist 33667 | gene_ex 68852 | PomBase gene products 74508 | PSI-MOD 197953 | fission_yeast_phenotype (27 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Inferred from Direct Assay | PSI-MOD | 3300 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Traceable Author Statement | PSI-MOD | 1 Unknown | PSI-MOD | 43 author statement without traceable support used in manual assertion | PSI-MOD | 1 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 curator inference used in manual assertion | PSI-MOD | 21 differential hybridization evidence | PSI-MOD | 1287 experimental evidence | PSI-MOD | 8138 experimental evidence used in manual assertion | PSI-MOD | 75 high throughput evidence used in manual assertion | PSI-MOD | 6709 mass spectrometry evidence | PSI-MOD | 8352 match to sequence model evidence used in manual assertion | PSI-MOD | 1119 neural network method evidence used in manual assertion | PSI-MOD | 47 sequence similarity evidence used in manual assertion | PSI-MOD | 262 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049 Western blot evidence | PomGeneExProt | 118 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 high throughput evidence used in manual assertion | PomGeneExProt | 2986 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence | PomGeneExProt | 19 northern assay evidence used in manual assertion | PomGeneExProt | 5 reporter gene assay evidence | PomGeneExProt | 129 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 436 ribosome profiling evidence | PomGeneExRD | 808 Northern assay evidence | PomGeneExRNA | 126 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 4364 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3614 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 153 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 19 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 14 Inferred by Curator | biological_process | 886 Inferred from Biological aspect of Ancestor | biological_process | 2299 Inferred from Direct Assay | biological_process | 654 Inferred from Electronic Annotation | biological_process | 344 Inferred from Experiment | biological_process | 774 Inferred from Expression Pattern | biological_process | 8 Inferred from Genetic Interaction | biological_process | 532 Inferred from Genomic Context | biological_process | 1 Inferred from Mutant Phenotype | biological_process | 3730 Inferred from Physical Interaction | biological_process | 57 Inferred from Sequence Model | biological_process | 110 Inferred from Sequence Orthology | biological_process | 1223 Inferred from Sequence or Structural Similarity | biological_process | 338 Non-traceable Author Statement | biological_process | 253 Traceable Author Statement | biological_process | 160 Inferred by Curator | cellular_component | 576 Inferred from Biological aspect of Ancestor | cellular_component | 1783 Inferred from Direct Assay | cellular_component | 6200 Inferred from Electronic Annotation | cellular_component | 217 Inferred from Experiment | cellular_component | 622 Inferred from Genetic Interaction | cellular_component | 44 Inferred from Mutant Phenotype | cellular_component | 60 Inferred from Physical Interaction | cellular_component | 295 Inferred from Sequence Model | cellular_component | 56 Inferred from Sequence Orthology | cellular_component | 791 Inferred from Sequence or Structural Similarity | cellular_component | 220 Inferred from high throughput direct assay | cellular_component | 6626 Non-traceable Author Statement | cellular_component | 94 Traceable Author Statement | cellular_component | 103 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2886 Chromatography evidence | fission_yeast_phenotype | 82 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1283 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Enzyme assay data | fission_yeast_phenotype | 2525 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 61 Flow cytometry data | fission_yeast_phenotype | 2210 Immunolocalization experiment data | fission_yeast_phenotype | 35 Northern assay evidence | fission_yeast_phenotype | 117 Other | fission_yeast_phenotype | 2757 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 44 Plasmid maintenance assay evidence | fission_yeast_phenotype | 82 RNA-sequencing evidence used in manual assertion | fission_yeast_phenotype | 229 Substance quantification | fission_yeast_phenotype | 1251 Western blot assay | fission_yeast_phenotype | 5330 cell growth assay evidence | fission_yeast_phenotype | 117832 cell viability assay evidence | fission_yeast_phenotype | 2163 competitive growth assay evidence | fission_yeast_phenotype | 1667 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2701 high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence | fission_yeast_phenotype | 40344 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 1431 reporter gene assay evidence | fission_yeast_phenotype | 3722 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 5297 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 RNA detection assay evidence | gene_ex | 2 experimental evidence | gene_ex | 19958 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 microscopy evidence | gene_ex | 9 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 188 Inferred from Biological aspect of Ancestor | molecular_function | 2313 Inferred from Direct Assay | molecular_function | 2158 Inferred from Electronic Annotation | molecular_function | 1451 Inferred from Experiment | molecular_function | 1180 Inferred from Genetic Interaction | molecular_function | 122 Inferred from Genomic Context | molecular_function | 2 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 1082 Inferred from Physical Interaction | molecular_function | 2321 Inferred from Sequence Model | molecular_function | 903 Inferred from Sequence Orthology | molecular_function | 702 Inferred from Sequence or Structural Similarity | molecular_function | 273 Inferred from high throughput direct assay | molecular_function | 4442 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 105 Traceable Author Statement | molecular_function | 151 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 Traceable Author Statement | pombase_family_or_domain | 5 ECO:0000015 | sequence | 1 Inferred from Experiment | sequence | 10 author statement supported by traceable reference used in manual assertion | sequence | 1 curator inference used in manual assertion | sequence | 6 direct assay evidence used in manual assertion | sequence | 7 experimental evidence used in manual assertion | sequence | 4 match to sequence model evidence | sequence | 941 match to sequence model evidence used in manual assertion | sequence | 425 mutant phenotype evidence used in manual assertion | sequence | 10 sequence similarity evidence | sequence | 25 sequence similarity evidence used in manual assertion | sequence | 155 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 65 (150 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Non-traceable Author Statement | complementation | 1 author statement without traceable support used in manual assertion | PSI-MOD | 1 Traceable Author Statement | PSI-MOD | 1 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 ECO:0000015 | sequence | 1 differential hybridization evidence | PomGeneExRNA | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | misc | 1 author statement supported by traceable reference used in manual assertion | sequence | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Direct Assay | misc | 1 Inferred from Genomic Context | biological_process | 1 experimental evidence | PomGeneExProt | 1 Inferred from Sequence Model | PSI-MOD | 2 RNA detection assay evidence | gene_ex | 2 Inferred from Genomic Context | molecular_function | 2 Inferred from Physical Interaction | misc | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Direct Assay | subunit_composition | 4 experimental evidence used in manual assertion | sequence | 4 Inferred from Mutant Phenotype | misc | 4 northern assay evidence used in manual assertion | PomGeneExProt | 5 Traceable Author Statement | pombase_family_or_domain | 5 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 immunofluorescence evidence | PomGeneExProt | 6 curator inference used in manual assertion | sequence | 6 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 direct assay evidence used in manual assertion | sequence | 7 Inferred from Expression Pattern | biological_process | 8 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Other direct assay | fission_yeast_phenotype | 8 microscopy evidence | gene_ex | 9 mutant phenotype evidence used in manual assertion | sequence | 10 Inferred from Experiment | sequence | 10 fusion protein localization evidence | PomGeneExProt | 11 Inferred from Sequence or Structural Similarity | genome_org | 11 western blot evidence used in manual assertion | PomGeneExRNA | 14 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 microscopy evidence | PomGeneExProt | 19 reporter gene assay evidence | PomGeneExRNA | 19 curator inference used in manual assertion | PSI-MOD | 21 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sequence similarity evidence | sequence | 25 Immunolocalization experiment data | fission_yeast_phenotype | 35 Inferred from Sequence or Structural Similarity | m_f_g | 41 Unknown | PSI-MOD | 43 Particle size and count assay | fission_yeast_phenotype | 44 Inferred from Genetic Interaction | cellular_component | 44 neural network method evidence used in manual assertion | PSI-MOD | 47 Inferred from Sequence Model | cellular_component | 56 Inferred from Physical Interaction | biological_process | 57 RNA protection assay evidence | PomGeneExRNA | 58 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Inferred from Mutant Phenotype | cellular_component | 60 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 61 Inferred from Sequence or Structural Similarity | warning | 65 experimental evidence used in manual assertion | PSI-MOD | 75 Plasmid maintenance assay evidence | fission_yeast_phenotype | 82 Chromatography evidence | fission_yeast_phenotype | 82 Non-traceable Author Statement | cellular_component | 94 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Traceable Author Statement | cellular_component | 103 Non-traceable Author Statement | molecular_function | 105 Inferred from Sequence Model | biological_process | 110 Northern assay evidence | fission_yeast_phenotype | 117 Western blot evidence | PomGeneExProt | 118 Inferred from Genetic Interaction | molecular_function | 122 Northern assay evidence | PomGeneExRNA | 126 reporter gene assay evidence | PomGeneExProt | 129 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Traceable Author Statement | molecular_function | 151 quantitative PCR | PomGeneExRNA | 153 sequence similarity evidence used in manual assertion | sequence | 155 Traceable Author Statement | biological_process | 160 Inferred by Curator | molecular_function | 188 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Electronic Annotation | cellular_component | 217 Inferred from Sequence or Structural Similarity | cellular_component | 220 RNA-sequencing evidence used in manual assertion | fission_yeast_phenotype | 229 Non-traceable Author Statement | biological_process | 253 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 sequence similarity evidence used in manual assertion | PSI-MOD | 262 Inferred from Sequence or Structural Similarity | molecular_function | 273 Inferred from Physical Interaction | cellular_component | 295 Inferred from Sequence or Structural Similarity | biological_process | 338 Inferred from Electronic Annotation | biological_process | 344 match to sequence model evidence used in manual assertion | sequence | 425 western blot evidence used in manual assertion | PomGeneExProt | 436 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Genetic Interaction | biological_process | 532 Inferred by Curator | cellular_component | 576 mass spectrometry evidence | PomGeneExProt | 614 Inferred from Experiment | cellular_component | 622 Inferred from Direct Assay | biological_process | 654 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Sequence Orthology | molecular_function | 702 Inferred from Experiment | biological_process | 774 Inferred from Sequence Orthology | cellular_component | 791 northern assay evidence used in manual assertion | PomGeneExRNA | 796 ribosome profiling evidence | PomGeneExRD | 808 Inferred by Curator | biological_process | 886 Inferred from Sequence Model | molecular_function | 903 match to sequence model evidence | sequence | 941 Inferred from Mutant Phenotype | molecular_function | 1082 match to sequence model evidence used in manual assertion | PSI-MOD | 1119 Inferred from Experiment | molecular_function | 1180 Inferred from Sequence Orthology | biological_process | 1223 Substance quantification | fission_yeast_phenotype | 1251 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1283 differential hybridization evidence | PSI-MOD | 1287 quantitative PCR | fission_yeast_phenotype | 1431 Inferred from Electronic Annotation | molecular_function | 1451 Inferred from high throughput mutant phenotype | molecular_function | 1535 competitive growth assay evidence | fission_yeast_phenotype | 1667 Inferred from Biological aspect of Ancestor | cellular_component | 1783 high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964 Inferred from Direct Assay | molecular_function | 2158 cell viability assay evidence | fission_yeast_phenotype | 2163 Flow cytometry data | fission_yeast_phenotype | 2210 Inferred from Biological aspect of Ancestor | biological_process | 2299 Inferred from Biological aspect of Ancestor | molecular_function | 2313 Inferred from Physical Interaction | molecular_function | 2321 Enzyme assay data | fission_yeast_phenotype | 2525 gel electrophoresis evidence | fission_yeast_phenotype | 2701 Other | fission_yeast_phenotype | 2757 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2886 high throughput evidence used in manual assertion | PomGeneExProt | 2986 Inferred from Direct Assay | PSI-MOD | 3300 expression microarray evidence | PomGeneExRNA | 3614 reporter gene assay evidence | fission_yeast_phenotype | 3722 Inferred from Mutant Phenotype | biological_process | 3730 RNA-sequencing evidence | PomGeneExRNA | 4364 Inferred from high throughput direct assay | molecular_function | 4442 transcript expression level evidence | fission_yeast_phenotype | 5297 Western blot assay | fission_yeast_phenotype | 5330 Inferred from Direct Assay | cellular_component | 6200 Inferred from high throughput direct assay | cellular_component | 6626 high throughput evidence used in manual assertion | PSI-MOD | 6709 experimental evidence | PSI-MOD | 8138 mass spectrometry evidence | PSI-MOD | 8352 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 19958 microscopy evidence | fission_yeast_phenotype | 40344 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049 cell growth assay evidence | fission_yeast_phenotype | 117832 (150 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2886 Chromatography evidence | fission_yeast_phenotype | 82 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1283 ECO:0000015 | sequence | 1 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Enzyme assay data | fission_yeast_phenotype | 2525 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 61 Flow cytometry data | fission_yeast_phenotype | 2210 Immunolocalization experiment data | fission_yeast_phenotype | 35 Inferred by Curator | biological_process | 886 Inferred by Curator | cellular_component | 576 Inferred by Curator | molecular_function | 188 Inferred from Biological aspect of Ancestor | biological_process | 2299 Inferred from Biological aspect of Ancestor | cellular_component | 1783 Inferred from Biological aspect of Ancestor | molecular_function | 2313 Inferred from Direct Assay | PSI-MOD | 3300 Inferred from Direct Assay | biological_process | 654 Inferred from Direct Assay | cellular_component | 6200 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 2158 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 344 Inferred from Electronic Annotation | cellular_component | 217 Inferred from Electronic Annotation | molecular_function | 1451 Inferred from Experiment | biological_process | 774 Inferred from Experiment | cellular_component | 622 Inferred from Experiment | molecular_function | 1180 Inferred from Experiment | sequence | 10 Inferred from Expression Pattern | biological_process | 8 Inferred from Genetic Interaction | biological_process | 532 Inferred from Genetic Interaction | cellular_component | 44 Inferred from Genetic Interaction | molecular_function | 122 Inferred from Genomic Context | biological_process | 1 Inferred from Genomic Context | molecular_function | 2 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3730 Inferred from Mutant Phenotype | cellular_component | 60 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 1082 Inferred from Physical Interaction | biological_process | 57 Inferred from Physical Interaction | cellular_component | 295 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2321 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 110 Inferred from Sequence Model | cellular_component | 56 Inferred from Sequence Model | molecular_function | 903 Inferred from Sequence Orthology | biological_process | 1223 Inferred from Sequence Orthology | cellular_component | 791 Inferred from Sequence Orthology | molecular_function | 702 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Inferred from Sequence or Structural Similarity | biological_process | 338 Inferred from Sequence or Structural Similarity | cellular_component | 220 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 273 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 65 Inferred from high throughput direct assay | cellular_component | 6626 Inferred from high throughput direct assay | molecular_function | 4442 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | biological_process | 253 Non-traceable Author Statement | cellular_component | 94 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 105 Northern assay evidence | PomGeneExRNA | 126 Northern assay evidence | fission_yeast_phenotype | 117 Other | fission_yeast_phenotype | 2757 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 44 Plasmid maintenance assay evidence | fission_yeast_phenotype | 82 RNA detection assay evidence | gene_ex | 2 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 4364 RNA-sequencing evidence used in manual assertion | fission_yeast_phenotype | 229 Substance quantification | fission_yeast_phenotype | 1251 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | biological_process | 160 Traceable Author Statement | cellular_component | 103 Traceable Author Statement | molecular_function | 151 Traceable Author Statement | pombase_family_or_domain | 5 Unknown | PSI-MOD | 43 Western blot assay | fission_yeast_phenotype | 5330 Western blot evidence | PomGeneExProt | 118 author statement supported by traceable reference used in manual assertion | sequence | 1 author statement without traceable support used in manual assertion | PSI-MOD | 1 cell growth assay evidence | fission_yeast_phenotype | 117832 cell viability assay evidence | fission_yeast_phenotype | 2163 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 competitive growth assay evidence | fission_yeast_phenotype | 1667 curator inference used in manual assertion | PSI-MOD | 21 curator inference used in manual assertion | sequence | 6 differential hybridization evidence | PSI-MOD | 1287 differential hybridization evidence | PomGeneExRNA | 1 direct assay evidence used in manual assertion | sequence | 7 experimental evidence | PSI-MOD | 8138 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 19958 experimental evidence used in manual assertion | PSI-MOD | 75 experimental evidence used in manual assertion | sequence | 4 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3614 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2701 high throughput evidence used in manual assertion | PSI-MOD | 6709 high throughput evidence used in manual assertion | PomGeneExProt | 2986 high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 mass spectrometry evidence | PSI-MOD | 8352 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 match to sequence model evidence | sequence | 941 match to sequence model evidence used in manual assertion | PSI-MOD | 1119 match to sequence model evidence used in manual assertion | sequence | 425 microscopy evidence | PomGeneExProt | 19 microscopy evidence | fission_yeast_phenotype | 40344 microscopy evidence | gene_ex | 9 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 mutant phenotype evidence used in manual assertion | sequence | 10 neural network method evidence used in manual assertion | PSI-MOD | 47 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExRNA | 153 quantitative PCR | fission_yeast_phenotype | 1431 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 129 reporter gene assay evidence | PomGeneExRNA | 19 reporter gene assay evidence | fission_yeast_phenotype | 3722 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 808 sequence similarity evidence | sequence | 25 sequence similarity evidence used in manual assertion | PSI-MOD | 262 sequence similarity evidence used in manual assertion | sequence | 155 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 5297 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 436 western blot evidence used in manual assertion | PomGeneExRNA | 14 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (150 rows) total: count -------- 480286 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 10 | sequence 116 | PomGeneExProt 495 | PomGeneExRNA 2387 | PSI-MOD 4835 | biological_process 5350 | molecular_function 6226 | cellular_component 44978 | PomBase annotation extension terms 81201 | fission_yeast_phenotype (9 rows) total -------- 100620 (1 row)