id: gomodel:678073a900000393
title: fermentation (GO:0006113)
taxon: NCBITaxon:4896
status: production
comments:
- I need to refine the fermentation terms when https://github.com/geneontology/go-ontology/issues/29511
  is resolved
activities:
- id: gomodel:678073a900000393/678073a900000437
  enabled_by:
    type: EnabledByGeneProductAssociation
    evidence:
    - term: ECO:0000315
      reference: PMID:15040954
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-01-15'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-01-28'
      provided_by:
      - http://www.pombase.org
    term: PomBase:SPCC13B11.01
  molecular_function:
    type: MolecularFunctionAssociation
    term: GO:0120542
  occurs_in:
    type: CellularAnatomicalEntityAssociation
    evidence:
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN008677163
      - SGD:S000005446
      - SGD:S000004688
      provenances:
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        date: '2025-01-15'
        provided_by:
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    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-01-15'
      provided_by:
      - http://www.pombase.org
    term: GO:0005737
  part_of:
    type: BiologicalProcessAssociation
    evidence:
    - term: ECO:0000305
      reference: GO_REF:0000033
      with_objects:
      - GO:0004737
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-01-15'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-01-15'
      provided_by:
      - http://www.pombase.org
    term: GO:0019655
  has_input:
  - type: MoleculeAssociation
    evidence:
    - term: ECO:0000315
      reference: PMID:15040954
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-01-15'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN008677163
      - CGD:CAL0000187038
      - SGD:S000005446
      - PomBase:SPCC13B11.01
      - SGD:S000004918
      - SGD:S000004688
      - UniProtKB:P54202
      - UniProtKB:P08843
      provenances:
      - contributor:
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        date: '2025-01-15'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-01-15'
      provided_by:
      - http://www.pombase.org
    term: CHEBI:15343
  has_output:
  - type: MoleculeAssociation
    evidence:
    - term: ECO:0000315
      reference: PMID:15040954
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-01-15'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN008677163
      - CGD:CAL0000187038
      - SGD:S000005446
      - PomBase:SPCC13B11.01
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      provenances:
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        date: '2025-01-15'
        provided_by:
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    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-01-15'
      provided_by:
      - http://www.pombase.org
    term: CHEBI:15846
  - type: MoleculeAssociation
    evidence:
    - term: ECO:0000315
      reference: PMID:15040954
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-01-15'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN008677163
      - CGD:CAL0000187038
      - SGD:S000005446
      - PomBase:SPCC13B11.01
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      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-01-15'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000315
      reference: PMID:15040954
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-01-15'
        provided_by:
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    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-01-15'
      provided_by:
      - http://www.pombase.org
    term: CHEBI:16236
  - type: MoleculeAssociation
    evidence:
    - term: ECO:0000315
      reference: PMID:15040954
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-01-15'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN008677163
      - CGD:CAL0000187038
      - SGD:S000005446
      - PomBase:SPCC13B11.01
      - SGD:S000004918
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      - UniProtKB:P54202
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      provenances:
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        date: '2025-01-15'
        provided_by:
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    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-01-15'
      provided_by:
      - http://www.pombase.org
    term: CHEBI:15846
  - type: MoleculeAssociation
    evidence:
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      reference: GO_REF:0000033
      with_objects:
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      - CGD:CAL0000187038
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      provenances:
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        date: '2025-01-15'
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    provenances:
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      date: '2025-01-15'
      provided_by:
      - http://www.pombase.org
    term: CHEBI:16236
- id: gomodel:678073a900000393/678073a900000416
  enabled_by:
    type: EnabledByGeneProductAssociation
    evidence:
    - term: ECO:0000318
      reference: GO_REF:0000033
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      - SGD:S000003319
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      provenances:
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        date: '2025-01-15'
        provided_by:
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    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-01-15'
      provided_by:
      - http://www.pombase.org
    term: PomBase:SPAC1F8.07c
  molecular_function:
    type: MolecularFunctionAssociation
    term: GO:0004737
  occurs_in:
    type: CellularAnatomicalEntityAssociation
    evidence:
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN008451158
      - SGD:S000004034
      provenances:
      - contributor:
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        date: '2025-01-15'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-01-15'
      provided_by:
      - http://www.pombase.org
    term: GO:0005829
  part_of:
    type: BiologicalProcessAssociation
    evidence:
    - term: ECO:0000305
      reference: GO_REF:0000033
      with_objects:
      - GO:0004737
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-01-15'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-01-15'
      provided_by:
      - http://www.pombase.org
    term: GO:0006113
  has_input:
  - type: MoleculeAssociation
    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-03-19'
      provided_by:
      - http://www.pombase.org
    term: CHEBI:15361
  has_output:
  - type: MoleculeAssociation
    evidence:
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
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      - SGD:S000004034
      - SGD:S000003319
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    provenances:
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      date: '2025-01-15'
      provided_by:
      - http://www.pombase.org
    term: CHEBI:15343
- id: gomodel:678073a900000393/682fbcd000005707
  enabled_by:
    type: EnabledByGeneProductAssociation
    evidence:
    - term: ECO:0000266
      reference: GO_REF:0000024
      with_objects:
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      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-06-08'
        provided_by:
        - http://www.pombase.org
    provenances:
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      date: '2025-06-08'
      provided_by:
      - http://www.pombase.org
    term: PomBase:SPAC9E9.09c
  molecular_function:
    type: MolecularFunctionAssociation
    term: GO:0140087
  occurs_in:
    type: CellularAnatomicalEntityAssociation
    evidence:
    - term: ECO:0007005
      reference: PMID:16823372
      provenances:
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    provenances:
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      date: '2025-06-08'
      provided_by:
      - http://www.pombase.org
    term: GO:0005829
  part_of:
    type: BiologicalProcessAssociation
    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-06-08'
      provided_by:
      - http://www.pombase.org
    term: GO:0110095
  has_input:
  - type: MoleculeAssociation
    evidence:
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      reference: PMID:15040954
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-06-08'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000318
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      with_objects:
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      provenances:
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    provenances:
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      date: '2025-06-08'
      provided_by:
      - http://www.pombase.org
    term: CHEBI:15343
  has_output:
  - type: MoleculeAssociation
    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-06-08'
      provided_by:
      - http://www.pombase.org
    term: CHEBI:30089
- id: gomodel:678073a900000393/678073a900000408
  enabled_by:
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      date: '2025-01-15'
      provided_by:
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    term: PomBase:SPAC13A11.06
  molecular_function:
    type: MolecularFunctionAssociation
    term: GO:0004737
  occurs_in:
    type: CellularAnatomicalEntityAssociation
    evidence:
    - term: ECO:0007005
      reference: PMID:16823372
      provenances:
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      date: '2025-01-15'
      provided_by:
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    term: GO:0005829
  part_of:
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      date: '2025-01-15'
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    term: GO:0019655
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    evidence: []
    provenances:
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      date: '2025-03-19'
      provided_by:
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    term: CHEBI:15361
  has_output:
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    evidence: []
    provenances:
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      provided_by:
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    term: CHEBI:15343
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      date: '2025-01-15'
      provided_by:
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    term: PomBase:SPAC3G9.11c
  molecular_function:
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    term: GO:0005829
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    term: GO:0006113
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  has_output:
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  causal_associations:
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      provided_by:
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    predicate: RO:0002413
    downstream_activity: gomodel:678073a900000393/682fbcd000005707
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      provided_by:
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    term: PomBase:SPAC4H3.10c
  molecular_function:
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    term: GO:0005829
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objects:
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  label: pyruvate
  type: gocam:Object
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  label: cytosol
  type: gocam:Object
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  label: direct assay evidence used in manual assertion
  type: gocam:Object
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  label: biological aspect of ancestor evidence used in manual assertion
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  label: pyruvate decarboxylase activity
  type: gocam:Object
- id: PomBase:SPAC3G9.11c
  label: pdc201 Spom
  type: gocam:Object
- id: GO:0006113
  label: fermentation
  type: gocam:Object
- id: ECO:0000305
  label: curator inference used in manual assertion
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- id: ECO:0007005
  label: high throughput direct assay evidence used in manual assertion
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  type: gocam:Object
- id: GO:0019655
  label: glycolytic fermentation to ethanol
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  label: sequence orthology evidence used in manual assertion
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  label: acetaldehyde
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  label: ethanol dehydrogenase (NAD+) activity
  type: gocam:Object
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  label: adh1 Spom
  type: gocam:Object
- id: GO:0005737
  label: cytoplasm
  type: gocam:Object
- id: ECO:0000315
  label: mutant phenotype evidence used in manual assertion
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  label: alcohol dehydrogenase (NAD+) activity
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- id: PomBase:SPAC5H10.06c
  label: adh4 Spom
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- id: GO:0005739
  label: mitochondrion
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  label: ethanol
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  label: NAD(+)
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  label: atd1 Spom
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  label: acetaldehyde dehydrogenase (NAD+) activity
  type: gocam:Object
- id: GO:0110095
  label: cellular detoxification of aldehyde
  type: gocam:Object
- id: CHEBI:30089
  label: acetate
  type: gocam:Object
provenances:
- contributor:
  - https://orcid.org/0000-0001-6330-7526
  date: '2025-06-09'
  provided_by:
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