counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 17 | cat_act 19 | ex_tools 32 | pathway 47 | subunit_composition 95 | m_f_g 179 | complementation 225 | genome_org 258 | misc 418 | disease_associated 680 | name_description 838 | EC numbers 939 | sequence 1604 | warning 1772 | PSI-MOD 1883 | PomBase family or domain 5143 | PomBase gene characterisation status 7018 | PomBase gene products 8644 | molecular_function 12854 | biological_process 15352 | cellular_component 25460 | species_dist 26357 | gene_ex 26438 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 674 Inferred from Direct Assay | biological_process | 585 Inferred from Electronic Annotation | biological_process | 1159 Inferred from Experiment | biological_process | 33 Inferred from Expression Pattern | biological_process | 111 Inferred from Genetic Interaction | biological_process | 876 Inferred from Mutant Phenotype | biological_process | 3817 Inferred from Physical Interaction | biological_process | 89 inferred from Reviewed Computational Analysis | biological_process | 25 Inferred from Sequence Model | biological_process | 186 Inferred from Sequence or Structural Similarity | biological_process | 814 Inferred from Sequence Orthology | biological_process | 2997 Non-traceable Author Statement | biological_process | 1148 Traceable Author Statement | biological_process | 338 Inferred by Curator | cellular_component | 249 Inferred from Direct Assay | cellular_component | 9613 Inferred from Electronic Annotation | cellular_component | 1423 Inferred from Experiment | cellular_component | 21 Inferred from Genetic Interaction | cellular_component | 68 Inferred from Mutant Phenotype | cellular_component | 58 Inferred from Physical Interaction | cellular_component | 59 inferred from Reviewed Computational Analysis | cellular_component | 219 Inferred from Sequence Model | cellular_component | 52 Inferred from Sequence or Structural Similarity | cellular_component | 732 Inferred from Sequence Orthology | cellular_component | 2332 Non-traceable Author Statement | cellular_component | 354 Traceable Author Statement | cellular_component | 172 Non-traceable Author Statement | complementation | 1 cell growth assay | fission_yeast_phenotype | 337 Cell growth assay | fission_yeast_phenotype | 4067 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 89 Chromatography evidence | fission_yeast_phenotype | 23 Co-immunoprecipitation experiment | fission_yeast_phenotype | 119 competitive growth assay evidence | fission_yeast_phenotype | 239 ECO:0000221 | fission_yeast_phenotype | 206 ECO:0000337 | fission_yeast_phenotype | 22 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 18 Enzyme assay data | fission_yeast_phenotype | 465 Flow cytometry data | fission_yeast_phenotype | 147 Gel electrophoresis evidence | fission_yeast_phenotype | 91 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Microscopy | fission_yeast_phenotype | 17503 Northern assay evidence | fission_yeast_phenotype | 181 Other | fission_yeast_phenotype | 155 Other direct assay | fission_yeast_phenotype | 13 Particle size and count assay | fission_yeast_phenotype | 8 Plasmid maintenance assay evidence | fission_yeast_phenotype | 23 Quantitative PCR | fission_yeast_phenotype | 70 Reporter gene assay | fission_yeast_phenotype | 136 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 109 Substance quantification evidence | fission_yeast_phenotype | 246 Traceable Author Statement | fission_yeast_phenotype | 13 Transcript expression level evidence | fission_yeast_phenotype | 303 Western blot assay | fission_yeast_phenotype | 280 experimental evidence | gene_ex | 24597 expression microarray evidence | gene_ex | 1364 Northern assay evidence | gene_ex | 280 quantitative PCR | gene_ex | 4 reporter gene assay evidence | gene_ex | 22 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 30 RNA protection assay evidence | gene_ex | 6 Western blot evidence | gene_ex | 47 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 46 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 71 Inferred from Direct Assay | molecular_function | 939 Inferred from Electronic Annotation | molecular_function | 2973 Inferred from Experiment | molecular_function | 14 Inferred from Genetic Interaction | molecular_function | 136 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 397 Inferred from Physical Interaction | molecular_function | 1105 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence Model | molecular_function | 335 Inferred from Sequence or Structural Similarity | molecular_function | 600 Inferred from Sequence Orthology | molecular_function | 1456 Non-traceable Author Statement | molecular_function | 238 Traceable Author Statement | molecular_function | 139 experimental evidence | PomBase family or domain | 3 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 4 Inferred from Direct Assay | PSI-MOD | 180 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 (98 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Key Residues | molecular_function | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 experimental evidence | PomBase family or domain | 3 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Direct Assay | subunit_composition | 3 quantitative PCR | gene_ex | 4 Traceable Author Statement | PomBase family or domain | 4 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 RNA protection assay evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Particle size and count assay | fission_yeast_phenotype | 8 Other direct assay | fission_yeast_phenotype | 13 Traceable Author Statement | fission_yeast_phenotype | 13 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Experiment | molecular_function | 14 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 18 Inferred from Experiment | cellular_component | 21 reporter gene assay evidence | gene_ex | 22 ECO:0000337 | fission_yeast_phenotype | 22 Chromatography evidence | fission_yeast_phenotype | 23 Plasmid maintenance assay evidence | fission_yeast_phenotype | 23 inferred from Reviewed Computational Analysis | biological_process | 25 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 30 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Inferred from Experiment | biological_process | 33 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | m_f_g | 46 Western blot evidence | gene_ex | 47 Inferred from Sequence Model | cellular_component | 52 Inferred from Mutant Phenotype | cellular_component | 58 Inferred from Physical Interaction | cellular_component | 59 Inferred from Genetic Interaction | cellular_component | 68 Quantitative PCR | fission_yeast_phenotype | 70 Inferred by Curator | molecular_function | 71 Inferred from Physical Interaction | biological_process | 89 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 89 Gel electrophoresis evidence | fission_yeast_phenotype | 91 Inferred from Sequence or Structural Similarity | warning | 105 Substance quantification | fission_yeast_phenotype | 109 Inferred from Expression Pattern | biological_process | 111 Co-immunoprecipitation experiment | fission_yeast_phenotype | 119 Cell Growth Assay | fission_yeast_phenotype | 132 Reporter gene assay | fission_yeast_phenotype | 136 Inferred from Genetic Interaction | molecular_function | 136 Traceable Author Statement | molecular_function | 139 Flow cytometry data | fission_yeast_phenotype | 147 Other | fission_yeast_phenotype | 155 Traceable Author Statement | cellular_component | 172 Inferred from Direct Assay | PSI-MOD | 180 Northern assay evidence | fission_yeast_phenotype | 181 Inferred from Sequence Model | biological_process | 186 ECO:0000221 | fission_yeast_phenotype | 206 inferred from Reviewed Computational Analysis | cellular_component | 219 Non-traceable Author Statement | molecular_function | 238 competitive growth assay evidence | fission_yeast_phenotype | 239 inferred from Reviewed Computational Analysis | molecular_function | 240 Substance quantification evidence | fission_yeast_phenotype | 246 Inferred by Curator | cellular_component | 249 Western blot assay | fission_yeast_phenotype | 280 Northern assay evidence | gene_ex | 280 Transcript expression level evidence | fission_yeast_phenotype | 303 Inferred from Sequence Model | molecular_function | 335 cell growth assay | fission_yeast_phenotype | 337 Traceable Author Statement | biological_process | 338 Non-traceable Author Statement | cellular_component | 354 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Mutant Phenotype | molecular_function | 397 Enzyme assay data | fission_yeast_phenotype | 465 Inferred from Direct Assay | biological_process | 585 Inferred from Sequence or Structural Similarity | molecular_function | 600 Inferred by Curator | biological_process | 674 Inferred from Sequence or Structural Similarity | cellular_component | 732 Inferred from Sequence or Structural Similarity | biological_process | 814 Inferred from Genetic Interaction | biological_process | 876 Inferred from Direct Assay | molecular_function | 939 Inferred from Physical Interaction | molecular_function | 1105 Non-traceable Author Statement | biological_process | 1148 Inferred from Electronic Annotation | biological_process | 1159 expression microarray evidence | gene_ex | 1364 Inferred from Electronic Annotation | cellular_component | 1423 Inferred from Sequence Orthology | molecular_function | 1456 Inferred from Sequence Orthology | cellular_component | 2332 Inferred from Electronic Annotation | molecular_function | 2973 Inferred from Sequence Orthology | biological_process | 2997 Inferred from Mutant Phenotype | biological_process | 3817 Cell growth assay | fission_yeast_phenotype | 4067 Inferred from Direct Assay | cellular_component | 9613 Microscopy | fission_yeast_phenotype | 17503 experimental evidence | gene_ex | 24597 (98 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- cell growth assay | fission_yeast_phenotype | 337 Cell growth assay | fission_yeast_phenotype | 4067 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 89 Chromatography evidence | fission_yeast_phenotype | 23 Co-immunoprecipitation experiment | fission_yeast_phenotype | 119 competitive growth assay evidence | fission_yeast_phenotype | 239 ECO:0000221 | fission_yeast_phenotype | 206 ECO:0000337 | fission_yeast_phenotype | 22 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 18 Enzyme assay data | fission_yeast_phenotype | 465 experimental evidence | gene_ex | 24597 experimental evidence | PomBase family or domain | 3 expression microarray evidence | gene_ex | 1364 Flow cytometry data | fission_yeast_phenotype | 147 Gel electrophoresis evidence | fission_yeast_phenotype | 91 Inferred by Curator | biological_process | 674 Inferred by Curator | cellular_component | 249 Inferred by Curator | molecular_function | 71 Inferred from Direct Assay | biological_process | 585 Inferred from Direct Assay | cellular_component | 9613 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 939 Inferred from Direct Assay | PSI-MOD | 180 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | biological_process | 1159 Inferred from Electronic Annotation | cellular_component | 1423 Inferred from Electronic Annotation | molecular_function | 2973 Inferred from Experiment | biological_process | 33 Inferred from Experiment | cellular_component | 21 Inferred from Experiment | molecular_function | 14 Inferred from Expression Pattern | biological_process | 111 Inferred from Genetic Interaction | biological_process | 876 Inferred from Genetic Interaction | cellular_component | 68 Inferred from Genetic Interaction | molecular_function | 136 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 3817 Inferred from Mutant Phenotype | cellular_component | 58 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 397 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 89 Inferred from Physical Interaction | cellular_component | 59 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 1105 inferred from Reviewed Computational Analysis | biological_process | 25 inferred from Reviewed Computational Analysis | cellular_component | 219 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence Model | biological_process | 186 Inferred from Sequence Model | cellular_component | 52 Inferred from Sequence Model | molecular_function | 335 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | biological_process | 814 Inferred from Sequence or Structural Similarity | cellular_component | 732 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 46 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 600 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence Orthology | biological_process | 2997 Inferred from Sequence Orthology | cellular_component | 2332 Inferred from Sequence Orthology | molecular_function | 1456 Microscopy | fission_yeast_phenotype | 17503 Non-traceable Author Statement | biological_process | 1148 Non-traceable Author Statement | cellular_component | 354 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 238 Northern assay evidence | fission_yeast_phenotype | 181 Northern assay evidence | gene_ex | 280 Other | fission_yeast_phenotype | 155 Other direct assay | fission_yeast_phenotype | 13 Particle size and count assay | fission_yeast_phenotype | 8 Plasmid maintenance assay evidence | fission_yeast_phenotype | 23 quantitative PCR | gene_ex | 4 Quantitative PCR | fission_yeast_phenotype | 70 Reporter gene assay | fission_yeast_phenotype | 136 reporter gene assay evidence | gene_ex | 22 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 30 RNA protection assay evidence | gene_ex | 6 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 109 Substance quantification evidence | fission_yeast_phenotype | 246 Traceable Author Statement | biological_process | 338 Traceable Author Statement | cellular_component | 172 Traceable Author Statement | fission_yeast_phenotype | 13 Traceable Author Statement | molecular_function | 139 Traceable Author Statement | PomBase family or domain | 4 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 Transcript expression level evidence | fission_yeast_phenotype | 303 Western blot assay | fission_yeast_phenotype | 280 Western blot evidence | gene_ex | 47 (98 rows) total: count -------- 136274 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 80 | PSI-MOD 326 | molecular_function 489 | cellular_component 842 | biological_process 2602 | PomBase annotation extension terms 5643 | fission_yeast_phenotype (6 rows)