counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 17 | cat_act 19 | ex_tools 32 | pathway 47 | subunit_composition 95 | m_f_g 179 | complementation 225 | genome_org 259 | misc 421 | disease_associated 688 | name_description 838 | EC numbers 939 | sequence 1607 | warning 1790 | PSI-MOD 1884 | PomBase family or domain 5143 | PomBase gene characterisation status 7020 | PomBase gene products 8729 | molecular_function 12926 | biological_process 15362 | cellular_component 25459 | species_dist 26398 | gene_ex 28749 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 674 Inferred from Direct Assay | biological_process | 558 Inferred from Electronic Annotation | biological_process | 1096 Inferred from Experiment | biological_process | 33 Inferred from Expression Pattern | biological_process | 105 Inferred from Genetic Interaction | biological_process | 868 Inferred from Mutant Phenotype | biological_process | 3890 Inferred from Physical Interaction | biological_process | 89 inferred from Reviewed Computational Analysis | biological_process | 25 Inferred from Sequence Model | biological_process | 206 Inferred from Sequence or Structural Similarity | biological_process | 821 Inferred from Sequence Orthology | biological_process | 3052 Non-traceable Author Statement | biological_process | 1163 Traceable Author Statement | biological_process | 342 Inferred by Curator | cellular_component | 250 Inferred from Direct Assay | cellular_component | 9652 Inferred from Electronic Annotation | cellular_component | 1393 Inferred from Experiment | cellular_component | 23 Inferred from Genetic Interaction | cellular_component | 73 Inferred from Mutant Phenotype | cellular_component | 63 Inferred from Physical Interaction | cellular_component | 59 inferred from Reviewed Computational Analysis | cellular_component | 219 Inferred from Sequence Model | cellular_component | 52 Inferred from Sequence or Structural Similarity | cellular_component | 730 Inferred from Sequence Orthology | cellular_component | 2326 Non-traceable Author Statement | cellular_component | 350 Traceable Author Statement | cellular_component | 171 Non-traceable Author Statement | complementation | 1 cell growth assay | fission_yeast_phenotype | 337 Cell growth assay | fission_yeast_phenotype | 5530 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 111 Chromatography evidence | fission_yeast_phenotype | 23 Co-immunoprecipitation experiment | fission_yeast_phenotype | 120 competitive growth assay evidence | fission_yeast_phenotype | 239 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 22 Enzyme assay data | fission_yeast_phenotype | 534 Flow cytometry data | fission_yeast_phenotype | 196 gel electrophoresis evidence | fission_yeast_phenotype | 22 Gel electrophoresis evidence | fission_yeast_phenotype | 123 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Microscopy | fission_yeast_phenotype | 18018 Northern assay evidence | fission_yeast_phenotype | 180 Other | fission_yeast_phenotype | 168 Other direct assay | fission_yeast_phenotype | 13 Particle size and count assay | fission_yeast_phenotype | 8 Plasmid maintenance assay evidence | fission_yeast_phenotype | 25 Quantitative PCR | fission_yeast_phenotype | 89 Reporter gene assay | fission_yeast_phenotype | 164 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 109 Substance quantification evidence | fission_yeast_phenotype | 258 Traceable Author Statement | fission_yeast_phenotype | 13 Transcript expression level evidence | fission_yeast_phenotype | 340 Western blot assay | fission_yeast_phenotype | 338 experimental evidence | gene_ex | 24597 expression microarray evidence | gene_ex | 1365 Northern assay evidence | gene_ex | 302 quantitative PCR | gene_ex | 7 reporter gene assay evidence | gene_ex | 22 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 30 RNA protection assay evidence | gene_ex | 6 Western blot evidence | gene_ex | 62 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 46 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 71 Inferred from Direct Assay | molecular_function | 937 Inferred from Electronic Annotation | molecular_function | 3037 Inferred from Experiment | molecular_function | 15 Inferred from Genetic Interaction | molecular_function | 137 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 401 Inferred from Physical Interaction | molecular_function | 1122 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence Model | molecular_function | 338 Inferred from Sequence or Structural Similarity | molecular_function | 595 Inferred from Sequence Orthology | molecular_function | 1459 Non-traceable Author Statement | molecular_function | 238 Traceable Author Statement | molecular_function | 137 experimental evidence | PomBase family or domain | 3 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 4 Inferred from Direct Assay | PSI-MOD | 199 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 (98 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Non-traceable Author Statement | complementation | 1 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Direct Assay | misc | 1 Inferred from Key Residues | molecular_function | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | sequence | 2 Traceable Author Statement | sequence | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 experimental evidence | PomBase family or domain | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 4 RNA protection assay evidence | gene_ex | 6 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Mutant Phenotype | sequence | 7 quantitative PCR | gene_ex | 7 Particle size and count assay | fission_yeast_phenotype | 8 Inferred from Sequence or Structural Similarity | genome_org | 13 Traceable Author Statement | fission_yeast_phenotype | 13 Other direct assay | fission_yeast_phenotype | 13 Inferred from Experiment | molecular_function | 15 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 22 reporter gene assay evidence | gene_ex | 22 gel electrophoresis evidence | fission_yeast_phenotype | 22 Chromatography evidence | fission_yeast_phenotype | 23 Inferred from Experiment | cellular_component | 23 inferred from Reviewed Computational Analysis | biological_process | 25 Plasmid maintenance assay evidence | fission_yeast_phenotype | 25 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 30 Inferred from Experiment | biological_process | 33 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | m_f_g | 46 Inferred from Sequence Model | cellular_component | 52 Inferred from Physical Interaction | cellular_component | 59 Western blot evidence | gene_ex | 62 Inferred from Mutant Phenotype | cellular_component | 63 Inferred by Curator | molecular_function | 71 Inferred from Genetic Interaction | cellular_component | 73 Inferred from Physical Interaction | biological_process | 89 Quantitative PCR | fission_yeast_phenotype | 89 Inferred from Expression Pattern | biological_process | 105 Inferred from Sequence or Structural Similarity | warning | 105 Substance quantification | fission_yeast_phenotype | 109 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 111 Co-immunoprecipitation experiment | fission_yeast_phenotype | 120 Gel electrophoresis evidence | fission_yeast_phenotype | 123 Cell Growth Assay | fission_yeast_phenotype | 132 Traceable Author Statement | molecular_function | 137 Inferred from Genetic Interaction | molecular_function | 137 Reporter gene assay | fission_yeast_phenotype | 164 Other | fission_yeast_phenotype | 168 Traceable Author Statement | cellular_component | 171 Northern assay evidence | fission_yeast_phenotype | 180 Flow cytometry data | fission_yeast_phenotype | 196 Inferred from Direct Assay | PSI-MOD | 199 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Sequence Model | biological_process | 206 inferred from Reviewed Computational Analysis | cellular_component | 219 Non-traceable Author Statement | molecular_function | 238 competitive growth assay evidence | fission_yeast_phenotype | 239 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred by Curator | cellular_component | 250 Substance quantification evidence | fission_yeast_phenotype | 258 Northern assay evidence | gene_ex | 302 cell growth assay | fission_yeast_phenotype | 337 Inferred from Sequence Model | molecular_function | 338 Western blot assay | fission_yeast_phenotype | 338 Transcript expression level evidence | fission_yeast_phenotype | 340 Traceable Author Statement | biological_process | 342 Non-traceable Author Statement | cellular_component | 350 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Mutant Phenotype | molecular_function | 401 Enzyme assay data | fission_yeast_phenotype | 534 Inferred from Direct Assay | biological_process | 558 Inferred from Sequence or Structural Similarity | molecular_function | 595 Inferred by Curator | biological_process | 674 Inferred from Sequence or Structural Similarity | cellular_component | 730 Inferred from Sequence or Structural Similarity | biological_process | 821 Inferred from Genetic Interaction | biological_process | 868 Inferred from Direct Assay | molecular_function | 937 Inferred from Electronic Annotation | biological_process | 1096 Inferred from Physical Interaction | molecular_function | 1122 Non-traceable Author Statement | biological_process | 1163 expression microarray evidence | gene_ex | 1365 Inferred from Electronic Annotation | cellular_component | 1393 Inferred from Sequence Orthology | molecular_function | 1459 Inferred from Sequence Orthology | cellular_component | 2326 Inferred from Electronic Annotation | molecular_function | 3037 Inferred from Sequence Orthology | biological_process | 3052 Inferred from Mutant Phenotype | biological_process | 3890 Cell growth assay | fission_yeast_phenotype | 5530 Inferred from Direct Assay | cellular_component | 9652 Microscopy | fission_yeast_phenotype | 18018 experimental evidence | gene_ex | 24597 (98 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- cell growth assay | fission_yeast_phenotype | 337 Cell growth assay | fission_yeast_phenotype | 5530 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 111 Chromatography evidence | fission_yeast_phenotype | 23 Co-immunoprecipitation experiment | fission_yeast_phenotype | 120 competitive growth assay evidence | fission_yeast_phenotype | 239 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 22 Enzyme assay data | fission_yeast_phenotype | 534 experimental evidence | gene_ex | 24597 experimental evidence | PomBase family or domain | 3 expression microarray evidence | gene_ex | 1365 Flow cytometry data | fission_yeast_phenotype | 196 gel electrophoresis evidence | fission_yeast_phenotype | 22 Gel electrophoresis evidence | fission_yeast_phenotype | 123 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred by Curator | biological_process | 674 Inferred by Curator | cellular_component | 250 Inferred by Curator | molecular_function | 71 Inferred from Direct Assay | biological_process | 558 Inferred from Direct Assay | cellular_component | 9652 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 937 Inferred from Direct Assay | PSI-MOD | 199 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | biological_process | 1096 Inferred from Electronic Annotation | cellular_component | 1393 Inferred from Electronic Annotation | molecular_function | 3037 Inferred from Experiment | biological_process | 33 Inferred from Experiment | cellular_component | 23 Inferred from Experiment | molecular_function | 15 Inferred from Expression Pattern | biological_process | 105 Inferred from Genetic Interaction | biological_process | 868 Inferred from Genetic Interaction | cellular_component | 73 Inferred from Genetic Interaction | molecular_function | 137 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 3890 Inferred from Mutant Phenotype | cellular_component | 63 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 401 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 89 Inferred from Physical Interaction | cellular_component | 59 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 1122 inferred from Reviewed Computational Analysis | biological_process | 25 inferred from Reviewed Computational Analysis | cellular_component | 219 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence Model | biological_process | 206 Inferred from Sequence Model | cellular_component | 52 Inferred from Sequence Model | molecular_function | 338 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | biological_process | 821 Inferred from Sequence or Structural Similarity | cellular_component | 730 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 46 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 595 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence Orthology | biological_process | 3052 Inferred from Sequence Orthology | cellular_component | 2326 Inferred from Sequence Orthology | molecular_function | 1459 Microscopy | fission_yeast_phenotype | 18018 Non-traceable Author Statement | biological_process | 1163 Non-traceable Author Statement | cellular_component | 350 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 238 Northern assay evidence | fission_yeast_phenotype | 180 Northern assay evidence | gene_ex | 302 Other | fission_yeast_phenotype | 168 Other direct assay | fission_yeast_phenotype | 13 Particle size and count assay | fission_yeast_phenotype | 8 Plasmid maintenance assay evidence | fission_yeast_phenotype | 25 quantitative PCR | gene_ex | 7 Quantitative PCR | fission_yeast_phenotype | 89 Reporter gene assay | fission_yeast_phenotype | 164 reporter gene assay evidence | gene_ex | 22 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 30 RNA protection assay evidence | gene_ex | 6 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 109 Substance quantification evidence | fission_yeast_phenotype | 258 Traceable Author Statement | biological_process | 342 Traceable Author Statement | cellular_component | 171 Traceable Author Statement | fission_yeast_phenotype | 13 Traceable Author Statement | molecular_function | 137 Traceable Author Statement | PomBase family or domain | 4 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 Transcript expression level evidence | fission_yeast_phenotype | 340 Western blot assay | fission_yeast_phenotype | 338 Western blot evidence | gene_ex | 62 (98 rows) total: count -------- 138828 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 83 | PSI-MOD 348 | molecular_function 527 | cellular_component 917 | biological_process 2940 | PomBase annotation extension terms 6135 | fission_yeast_phenotype (6 rows)