counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 17 | cat_act 19 | ex_tools 32 | pathway 47 | subunit_composition 95 | m_f_g 181 | complementation 225 | genome_org 260 | misc 421 | disease_associated 692 | name_description 838 | EC numbers 940 | sequence 1607 | warning 1805 | PSI-MOD 1884 | PomBase family or domain 5143 | PomBase gene characterisation status 7020 | PomBase gene products 8780 | molecular_function 12953 | biological_process 15391 | cellular_component 25457 | species_dist 26430 | gene_ex 29564 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 661 Inferred from Direct Assay | biological_process | 568 Inferred from Electronic Annotation | biological_process | 1082 Inferred from Experiment | biological_process | 33 Inferred from Expression Pattern | biological_process | 104 Inferred from Genetic Interaction | biological_process | 860 Inferred from Mutant Phenotype | biological_process | 3913 Inferred from Physical Interaction | biological_process | 89 inferred from Reviewed Computational Analysis | biological_process | 25 Inferred from Sequence Model | biological_process | 211 Inferred from Sequence or Structural Similarity | biological_process | 830 Inferred from Sequence Orthology | biological_process | 3073 Non-traceable Author Statement | biological_process | 1160 Traceable Author Statement | biological_process | 340 Inferred by Curator | cellular_component | 249 Inferred from Direct Assay | cellular_component | 9690 Inferred from Electronic Annotation | cellular_component | 1384 Inferred from Experiment | cellular_component | 23 Inferred from Genetic Interaction | cellular_component | 73 Inferred from Mutant Phenotype | cellular_component | 63 Inferred from Physical Interaction | cellular_component | 62 inferred from Reviewed Computational Analysis | cellular_component | 219 Inferred from Sequence Model | cellular_component | 51 Inferred from Sequence or Structural Similarity | cellular_component | 735 Inferred from Sequence Orthology | cellular_component | 2327 Non-traceable Author Statement | cellular_component | 347 Traceable Author Statement | cellular_component | 167 Non-traceable Author Statement | complementation | 1 cell growth assay | fission_yeast_phenotype | 337 Cell growth assay | fission_yeast_phenotype | 5765 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 154 Chromatography evidence | fission_yeast_phenotype | 23 Co-immunoprecipitation experiment | fission_yeast_phenotype | 125 competitive growth assay evidence | fission_yeast_phenotype | 239 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 28 Enzyme assay data | fission_yeast_phenotype | 561 Flow cytometry data | fission_yeast_phenotype | 200 gel electrophoresis evidence | fission_yeast_phenotype | 22 Gel electrophoresis evidence | fission_yeast_phenotype | 162 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Microscopy | fission_yeast_phenotype | 18221 Northern assay evidence | fission_yeast_phenotype | 180 Other | fission_yeast_phenotype | 171 Other direct assay | fission_yeast_phenotype | 13 Particle size and count assay | fission_yeast_phenotype | 8 Plasmid maintenance assay evidence | fission_yeast_phenotype | 25 Quantitative PCR | fission_yeast_phenotype | 89 Reporter gene assay | fission_yeast_phenotype | 175 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 109 Substance quantification evidence | fission_yeast_phenotype | 272 Traceable Author Statement | fission_yeast_phenotype | 13 Transcript expression level evidence | fission_yeast_phenotype | 509 Western blot assay | fission_yeast_phenotype | 396 experimental evidence | gene_ex | 24597 expression microarray evidence | gene_ex | 1365 Northern assay evidence | gene_ex | 308 quantitative PCR | gene_ex | 15 reporter gene assay evidence | gene_ex | 22 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 34 RNA protection assay evidence | gene_ex | 6 Western blot evidence | gene_ex | 71 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 46 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 69 Inferred from Direct Assay | molecular_function | 976 Inferred from Electronic Annotation | molecular_function | 3014 Inferred from Experiment | molecular_function | 16 Inferred from Genetic Interaction | molecular_function | 136 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 409 Inferred from Physical Interaction | molecular_function | 1140 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence Model | molecular_function | 343 Inferred from Sequence or Structural Similarity | molecular_function | 601 Inferred from Sequence Orthology | molecular_function | 1459 Non-traceable Author Statement | molecular_function | 239 Traceable Author Statement | molecular_function | 134 experimental evidence | PomBase family or domain | 3 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 4 Inferred from Direct Assay | PSI-MOD | 215 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 (98 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Key Residues | molecular_function | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | misc | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Direct Assay | sequence | 2 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Direct Assay | subunit_composition | 3 experimental evidence | PomBase family or domain | 3 Traceable Author Statement | PomBase family or domain | 4 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 RNA protection assay evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Particle size and count assay | fission_yeast_phenotype | 8 Inferred from Sequence or Structural Similarity | genome_org | 13 Traceable Author Statement | fission_yeast_phenotype | 13 Other direct assay | fission_yeast_phenotype | 13 quantitative PCR | gene_ex | 15 Inferred from Experiment | molecular_function | 16 gel electrophoresis evidence | fission_yeast_phenotype | 22 reporter gene assay evidence | gene_ex | 22 Chromatography evidence | fission_yeast_phenotype | 23 Inferred from Experiment | cellular_component | 23 Plasmid maintenance assay evidence | fission_yeast_phenotype | 25 inferred from Reviewed Computational Analysis | biological_process | 25 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 28 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Inferred from Experiment | biological_process | 33 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 34 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | m_f_g | 46 Inferred from Sequence Model | cellular_component | 51 Inferred from Physical Interaction | cellular_component | 62 Inferred from Mutant Phenotype | cellular_component | 63 Inferred by Curator | molecular_function | 69 Western blot evidence | gene_ex | 71 Inferred from Genetic Interaction | cellular_component | 73 Inferred from Physical Interaction | biological_process | 89 Quantitative PCR | fission_yeast_phenotype | 89 Inferred from Expression Pattern | biological_process | 104 Inferred from Sequence or Structural Similarity | warning | 105 Substance quantification | fission_yeast_phenotype | 109 Co-immunoprecipitation experiment | fission_yeast_phenotype | 125 Cell Growth Assay | fission_yeast_phenotype | 132 Traceable Author Statement | molecular_function | 134 Inferred from Genetic Interaction | molecular_function | 136 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 154 Gel electrophoresis evidence | fission_yeast_phenotype | 162 Traceable Author Statement | cellular_component | 167 Other | fission_yeast_phenotype | 171 Reporter gene assay | fission_yeast_phenotype | 175 Northern assay evidence | fission_yeast_phenotype | 180 Flow cytometry data | fission_yeast_phenotype | 200 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Sequence Model | biological_process | 211 Inferred from Direct Assay | PSI-MOD | 215 inferred from Reviewed Computational Analysis | cellular_component | 219 Non-traceable Author Statement | molecular_function | 239 competitive growth assay evidence | fission_yeast_phenotype | 239 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred by Curator | cellular_component | 249 Substance quantification evidence | fission_yeast_phenotype | 272 Northern assay evidence | gene_ex | 308 cell growth assay | fission_yeast_phenotype | 337 Traceable Author Statement | biological_process | 340 Inferred from Sequence Model | molecular_function | 343 Non-traceable Author Statement | cellular_component | 347 Inferred from Sequence or Structural Similarity | sequence | 355 Western blot assay | fission_yeast_phenotype | 396 Inferred from Mutant Phenotype | molecular_function | 409 Transcript expression level evidence | fission_yeast_phenotype | 509 Enzyme assay data | fission_yeast_phenotype | 561 Inferred from Direct Assay | biological_process | 568 Inferred from Sequence or Structural Similarity | molecular_function | 601 Inferred by Curator | biological_process | 661 Inferred from Sequence or Structural Similarity | cellular_component | 735 Inferred from Sequence or Structural Similarity | biological_process | 830 Inferred from Genetic Interaction | biological_process | 860 Inferred from Direct Assay | molecular_function | 976 Inferred from Electronic Annotation | biological_process | 1082 Inferred from Physical Interaction | molecular_function | 1140 Non-traceable Author Statement | biological_process | 1160 expression microarray evidence | gene_ex | 1365 Inferred from Electronic Annotation | cellular_component | 1384 Inferred from Sequence Orthology | molecular_function | 1459 Inferred from Sequence Orthology | cellular_component | 2327 Inferred from Electronic Annotation | molecular_function | 3014 Inferred from Sequence Orthology | biological_process | 3073 Inferred from Mutant Phenotype | biological_process | 3913 Cell growth assay | fission_yeast_phenotype | 5765 Inferred from Direct Assay | cellular_component | 9690 Microscopy | fission_yeast_phenotype | 18221 experimental evidence | gene_ex | 24597 (98 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- cell growth assay | fission_yeast_phenotype | 337 Cell growth assay | fission_yeast_phenotype | 5765 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 154 Chromatography evidence | fission_yeast_phenotype | 23 Co-immunoprecipitation experiment | fission_yeast_phenotype | 125 competitive growth assay evidence | fission_yeast_phenotype | 239 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 28 Enzyme assay data | fission_yeast_phenotype | 561 experimental evidence | gene_ex | 24597 experimental evidence | PomBase family or domain | 3 expression microarray evidence | gene_ex | 1365 Flow cytometry data | fission_yeast_phenotype | 200 gel electrophoresis evidence | fission_yeast_phenotype | 22 Gel electrophoresis evidence | fission_yeast_phenotype | 162 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred by Curator | biological_process | 661 Inferred by Curator | cellular_component | 249 Inferred by Curator | molecular_function | 69 Inferred from Direct Assay | biological_process | 568 Inferred from Direct Assay | cellular_component | 9690 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 976 Inferred from Direct Assay | PSI-MOD | 215 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | biological_process | 1082 Inferred from Electronic Annotation | cellular_component | 1384 Inferred from Electronic Annotation | molecular_function | 3014 Inferred from Experiment | biological_process | 33 Inferred from Experiment | cellular_component | 23 Inferred from Experiment | molecular_function | 16 Inferred from Expression Pattern | biological_process | 104 Inferred from Genetic Interaction | biological_process | 860 Inferred from Genetic Interaction | cellular_component | 73 Inferred from Genetic Interaction | molecular_function | 136 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 3913 Inferred from Mutant Phenotype | cellular_component | 63 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 409 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 89 Inferred from Physical Interaction | cellular_component | 62 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 1140 inferred from Reviewed Computational Analysis | biological_process | 25 inferred from Reviewed Computational Analysis | cellular_component | 219 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence Model | biological_process | 211 Inferred from Sequence Model | cellular_component | 51 Inferred from Sequence Model | molecular_function | 343 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | biological_process | 830 Inferred from Sequence or Structural Similarity | cellular_component | 735 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 46 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 601 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence Orthology | biological_process | 3073 Inferred from Sequence Orthology | cellular_component | 2327 Inferred from Sequence Orthology | molecular_function | 1459 Microscopy | fission_yeast_phenotype | 18221 Non-traceable Author Statement | biological_process | 1160 Non-traceable Author Statement | cellular_component | 347 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 239 Northern assay evidence | fission_yeast_phenotype | 180 Northern assay evidence | gene_ex | 308 Other | fission_yeast_phenotype | 171 Other direct assay | fission_yeast_phenotype | 13 Particle size and count assay | fission_yeast_phenotype | 8 Plasmid maintenance assay evidence | fission_yeast_phenotype | 25 quantitative PCR | gene_ex | 15 Quantitative PCR | fission_yeast_phenotype | 89 Reporter gene assay | fission_yeast_phenotype | 175 reporter gene assay evidence | gene_ex | 22 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 34 RNA protection assay evidence | gene_ex | 6 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 109 Substance quantification evidence | fission_yeast_phenotype | 272 Traceable Author Statement | biological_process | 340 Traceable Author Statement | cellular_component | 167 Traceable Author Statement | fission_yeast_phenotype | 13 Traceable Author Statement | molecular_function | 134 Traceable Author Statement | PomBase family or domain | 4 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 Transcript expression level evidence | fission_yeast_phenotype | 509 Western blot assay | fission_yeast_phenotype | 396 Western blot evidence | gene_ex | 71 (98 rows) total: count -------- 139803 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 86 | PSI-MOD 383 | molecular_function 558 | cellular_component 945 | biological_process 3400 | PomBase annotation extension terms 6563 | fission_yeast_phenotype (6 rows)