counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 17 | cat_act 20 | ex_tools 32 | pathway 95 | m_f_g 119 | subunit_composition 191 | complementation 225 | genome_org 258 | misc 422 | disease_associated 695 | name_description 839 | EC numbers 941 | sequence 1606 | warning 1884 | PomBase family or domain 1941 | PSI-MOD 5143 | PomBase gene characterisation status 7020 | PomBase gene products 8767 | molecular_function 12939 | biological_process 15445 | cellular_component 25463 | species_dist 26474 | gene_ex 31769 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 656 Inferred from Direct Assay | biological_process | 597 Inferred from Electronic Annotation | biological_process | 1061 Inferred from Experiment | biological_process | 32 Inferred from Expression Pattern | biological_process | 94 Inferred from Genetic Interaction | biological_process | 849 Inferred from Mutant Phenotype | biological_process | 3908 Inferred from Physical Interaction | biological_process | 88 inferred from Reviewed Computational Analysis | biological_process | 25 Inferred from Sequence Model | biological_process | 213 Inferred from Sequence or Structural Similarity | biological_process | 836 Inferred from Sequence Orthology | biological_process | 3075 Non-traceable Author Statement | biological_process | 1167 Traceable Author Statement | biological_process | 334 Inferred by Curator | cellular_component | 249 Inferred from Direct Assay | cellular_component | 9743 Inferred from Electronic Annotation | cellular_component | 1385 Inferred from Experiment | cellular_component | 23 Inferred from Genetic Interaction | cellular_component | 73 Inferred from Mutant Phenotype | cellular_component | 66 Inferred from Physical Interaction | cellular_component | 65 inferred from Reviewed Computational Analysis | cellular_component | 219 Inferred from Sequence Model | cellular_component | 51 Inferred from Sequence or Structural Similarity | cellular_component | 734 Inferred from Sequence Orthology | cellular_component | 2328 Non-traceable Author Statement | cellular_component | 342 Traceable Author Statement | cellular_component | 166 Non-traceable Author Statement | complementation | 1 cell growth assay | fission_yeast_phenotype | 337 Cell growth assay | fission_yeast_phenotype | 6809 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 190 Chromatography evidence | fission_yeast_phenotype | 23 Co-immunoprecipitation experiment | fission_yeast_phenotype | 133 competitive growth assay evidence | fission_yeast_phenotype | 239 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 41 Enzyme assay data | fission_yeast_phenotype | 601 Flow cytometry data | fission_yeast_phenotype | 290 gel electrophoresis evidence | fission_yeast_phenotype | 22 Gel electrophoresis evidence | fission_yeast_phenotype | 201 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 microscopy | fission_yeast_phenotype | 150 Microscopy | fission_yeast_phenotype | 18585 Northern assay evidence | fission_yeast_phenotype | 180 Other | fission_yeast_phenotype | 298 Other direct assay | fission_yeast_phenotype | 13 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 28 Quantitative PCR | fission_yeast_phenotype | 103 Reporter gene assay | fission_yeast_phenotype | 180 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 108 Substance quantification evidence | fission_yeast_phenotype | 308 Traceable Author Statement | fission_yeast_phenotype | 13 Transcript expression level evidence | fission_yeast_phenotype | 644 Western blot assay | fission_yeast_phenotype | 515 experimental evidence | gene_ex | 24597 expression microarray evidence | gene_ex | 1365 fusion protein localization evidence | gene_ex | 1 immunofluorescence evidence | gene_ex | 4 Northern assay evidence | gene_ex | 342 quantitative PCR | gene_ex | 15 reporter gene assay evidence | gene_ex | 22 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 35 RNA protection assay evidence | gene_ex | 6 Western blot evidence | gene_ex | 80 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 46 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 64 Inferred from Direct Assay | molecular_function | 1014 Inferred from Electronic Annotation | molecular_function | 3020 Inferred from Experiment | molecular_function | 16 Inferred from Genetic Interaction | molecular_function | 135 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 416 Inferred from Physical Interaction | molecular_function | 1104 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence Model | molecular_function | 337 Inferred from Sequence or Structural Similarity | molecular_function | 598 Inferred from Sequence Orthology | molecular_function | 1454 Non-traceable Author Statement | molecular_function | 233 Traceable Author Statement | molecular_function | 132 experimental evidence | PomBase family or domain | 3 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 4 Inferred from Direct Assay | PSI-MOD | 353 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 (101 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- fusion protein localization evidence | gene_ex | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | misc | 1 Non-traceable Author Statement | complementation | 1 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | sequence | 2 Traceable Author Statement | sequence | 2 experimental evidence | PomBase family or domain | 3 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 4 immunofluorescence evidence | gene_ex | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 RNA protection assay evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Particle size and count assay | fission_yeast_phenotype | 9 Inferred from Sequence or Structural Similarity | genome_org | 13 Traceable Author Statement | fission_yeast_phenotype | 13 Other direct assay | fission_yeast_phenotype | 13 quantitative PCR | gene_ex | 15 Inferred from Experiment | molecular_function | 16 gel electrophoresis evidence | fission_yeast_phenotype | 22 reporter gene assay evidence | gene_ex | 22 Chromatography evidence | fission_yeast_phenotype | 23 Inferred from Experiment | cellular_component | 23 inferred from Reviewed Computational Analysis | biological_process | 25 Plasmid maintenance assay evidence | fission_yeast_phenotype | 28 Inferred from Experiment | biological_process | 32 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 35 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 41 Inferred from Sequence or Structural Similarity | m_f_g | 46 Inferred from Sequence Model | cellular_component | 51 Inferred by Curator | molecular_function | 64 Inferred from Physical Interaction | cellular_component | 65 Inferred from Mutant Phenotype | cellular_component | 66 Inferred from Genetic Interaction | cellular_component | 73 Western blot evidence | gene_ex | 80 Inferred from Physical Interaction | biological_process | 88 Inferred from Expression Pattern | biological_process | 94 Quantitative PCR | fission_yeast_phenotype | 103 Inferred from Sequence or Structural Similarity | warning | 105 Substance quantification | fission_yeast_phenotype | 108 Cell Growth Assay | fission_yeast_phenotype | 132 Traceable Author Statement | molecular_function | 132 Co-immunoprecipitation experiment | fission_yeast_phenotype | 133 Inferred from Genetic Interaction | molecular_function | 135 microscopy | fission_yeast_phenotype | 150 Traceable Author Statement | cellular_component | 166 Reporter gene assay | fission_yeast_phenotype | 180 Northern assay evidence | fission_yeast_phenotype | 180 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 190 Gel electrophoresis evidence | fission_yeast_phenotype | 201 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Sequence Model | biological_process | 213 inferred from Reviewed Computational Analysis | cellular_component | 219 Non-traceable Author Statement | molecular_function | 233 competitive growth assay evidence | fission_yeast_phenotype | 239 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred by Curator | cellular_component | 249 Flow cytometry data | fission_yeast_phenotype | 290 Other | fission_yeast_phenotype | 298 Substance quantification evidence | fission_yeast_phenotype | 308 Traceable Author Statement | biological_process | 334 Inferred from Sequence Model | molecular_function | 337 cell growth assay | fission_yeast_phenotype | 337 Northern assay evidence | gene_ex | 342 Non-traceable Author Statement | cellular_component | 342 Inferred from Direct Assay | PSI-MOD | 353 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Mutant Phenotype | molecular_function | 416 Western blot assay | fission_yeast_phenotype | 515 Inferred from Direct Assay | biological_process | 597 Inferred from Sequence or Structural Similarity | molecular_function | 598 Enzyme assay data | fission_yeast_phenotype | 601 Transcript expression level evidence | fission_yeast_phenotype | 644 Inferred by Curator | biological_process | 656 Inferred from Sequence or Structural Similarity | cellular_component | 734 Inferred from Sequence or Structural Similarity | biological_process | 836 Inferred from Genetic Interaction | biological_process | 849 Inferred from Direct Assay | molecular_function | 1014 Inferred from Electronic Annotation | biological_process | 1061 Inferred from Physical Interaction | molecular_function | 1104 Non-traceable Author Statement | biological_process | 1167 expression microarray evidence | gene_ex | 1365 Inferred from Electronic Annotation | cellular_component | 1385 Inferred from Sequence Orthology | molecular_function | 1454 Inferred from Sequence Orthology | cellular_component | 2328 Inferred from Electronic Annotation | molecular_function | 3020 Inferred from Sequence Orthology | biological_process | 3075 Inferred from Mutant Phenotype | biological_process | 3908 Cell growth assay | fission_yeast_phenotype | 6809 Inferred from Direct Assay | cellular_component | 9743 Microscopy | fission_yeast_phenotype | 18585 experimental evidence | gene_ex | 24597 (101 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- cell growth assay | fission_yeast_phenotype | 337 Cell growth assay | fission_yeast_phenotype | 6809 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 190 Chromatography evidence | fission_yeast_phenotype | 23 Co-immunoprecipitation experiment | fission_yeast_phenotype | 133 competitive growth assay evidence | fission_yeast_phenotype | 239 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 41 Enzyme assay data | fission_yeast_phenotype | 601 experimental evidence | gene_ex | 24597 experimental evidence | PomBase family or domain | 3 expression microarray evidence | gene_ex | 1365 Flow cytometry data | fission_yeast_phenotype | 290 fusion protein localization evidence | gene_ex | 1 gel electrophoresis evidence | fission_yeast_phenotype | 22 Gel electrophoresis evidence | fission_yeast_phenotype | 201 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 4 Inferred by Curator | biological_process | 656 Inferred by Curator | cellular_component | 249 Inferred by Curator | molecular_function | 64 Inferred from Direct Assay | biological_process | 597 Inferred from Direct Assay | cellular_component | 9743 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1014 Inferred from Direct Assay | PSI-MOD | 353 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | biological_process | 1061 Inferred from Electronic Annotation | cellular_component | 1385 Inferred from Electronic Annotation | molecular_function | 3020 Inferred from Experiment | biological_process | 32 Inferred from Experiment | cellular_component | 23 Inferred from Experiment | molecular_function | 16 Inferred from Expression Pattern | biological_process | 94 Inferred from Genetic Interaction | biological_process | 849 Inferred from Genetic Interaction | cellular_component | 73 Inferred from Genetic Interaction | molecular_function | 135 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 3908 Inferred from Mutant Phenotype | cellular_component | 66 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 416 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 88 Inferred from Physical Interaction | cellular_component | 65 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 1104 inferred from Reviewed Computational Analysis | biological_process | 25 inferred from Reviewed Computational Analysis | cellular_component | 219 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence Model | biological_process | 213 Inferred from Sequence Model | cellular_component | 51 Inferred from Sequence Model | molecular_function | 337 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | biological_process | 836 Inferred from Sequence or Structural Similarity | cellular_component | 734 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 46 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 598 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence Orthology | biological_process | 3075 Inferred from Sequence Orthology | cellular_component | 2328 Inferred from Sequence Orthology | molecular_function | 1454 microscopy | fission_yeast_phenotype | 150 Microscopy | fission_yeast_phenotype | 18585 Non-traceable Author Statement | biological_process | 1167 Non-traceable Author Statement | cellular_component | 342 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 233 Northern assay evidence | fission_yeast_phenotype | 180 Northern assay evidence | gene_ex | 342 Other | fission_yeast_phenotype | 298 Other direct assay | fission_yeast_phenotype | 13 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 28 quantitative PCR | gene_ex | 15 Quantitative PCR | fission_yeast_phenotype | 103 Reporter gene assay | fission_yeast_phenotype | 180 reporter gene assay evidence | gene_ex | 22 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 35 RNA protection assay evidence | gene_ex | 6 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 108 Substance quantification evidence | fission_yeast_phenotype | 308 Traceable Author Statement | biological_process | 334 Traceable Author Statement | cellular_component | 166 Traceable Author Statement | fission_yeast_phenotype | 13 Traceable Author Statement | molecular_function | 132 Traceable Author Statement | PomBase family or domain | 4 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 Transcript expression level evidence | fission_yeast_phenotype | 644 Western blot assay | fission_yeast_phenotype | 515 Western blot evidence | gene_ex | 80 (101 rows) total: count -------- 142307 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 174 | PSI-MOD 414 | molecular_function 614 | cellular_component 1044 | biological_process 3997 | PomBase annotation extension terms 7271 | fission_yeast_phenotype (6 rows)