counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 20 | cat_act 20 | ex_tools 32 | pathway 94 | m_f_g 119 | subunit_composition 196 | complementation 225 | genome_org 272 | misc 423 | disease_associated 703 | name_description 839 | EC numbers 941 | sequence 1606 | warning 1883 | PomBase family or domain 5143 | PomBase gene characterisation status 5418 | PSI-MOD 7020 | PomBase gene products 8841 | molecular_function 13049 | biological_process 15429 | cellular_component 25465 | species_dist 32591 | fission_yeast_phenotype 40278 | gene_ex (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 646 Inferred from Direct Assay | biological_process | 601 Inferred from Electronic Annotation | biological_process | 1204 Inferred from Experiment | biological_process | 32 Inferred from Expression Pattern | biological_process | 116 Inferred from Genetic Interaction | biological_process | 836 Inferred from Mutant Phenotype | biological_process | 3926 Inferred from Physical Interaction | biological_process | 87 inferred from Reviewed Computational Analysis | biological_process | 25 Inferred from Sequence Model | biological_process | 193 Inferred from Sequence or Structural Similarity | biological_process | 829 Inferred from Sequence Orthology | biological_process | 3062 Non-traceable Author Statement | biological_process | 1159 Traceable Author Statement | biological_process | 333 Inferred by Curator | cellular_component | 249 Inferred from Direct Assay | cellular_component | 9710 Inferred from Electronic Annotation | cellular_component | 1392 Inferred from Experiment | cellular_component | 23 Inferred from Genetic Interaction | cellular_component | 73 Inferred from Mutant Phenotype | cellular_component | 68 Inferred from Physical Interaction | cellular_component | 66 inferred from Reviewed Computational Analysis | cellular_component | 219 Inferred from Sequence Model | cellular_component | 52 Inferred from Sequence or Structural Similarity | cellular_component | 731 Inferred from Sequence Orthology | cellular_component | 2333 Non-traceable Author Statement | cellular_component | 349 Traceable Author Statement | cellular_component | 164 Non-traceable Author Statement | complementation | 1 cell growth assay | fission_yeast_phenotype | 337 Cell growth assay | fission_yeast_phenotype | 7170 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 195 Chromatography evidence | fission_yeast_phenotype | 23 Co-immunoprecipitation experiment | fission_yeast_phenotype | 134 competitive growth assay evidence | fission_yeast_phenotype | 239 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 41 Enzyme activity assay | fission_yeast_phenotype | 7 Enzyme assay data | fission_yeast_phenotype | 629 Flow cytometry data | fission_yeast_phenotype | 310 gel electrophoresis evidence | fission_yeast_phenotype | 22 Gel electrophoresis evidence | fission_yeast_phenotype | 220 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 microscopy | fission_yeast_phenotype | 150 Microscopy | fission_yeast_phenotype | 18860 Northern assay evidence | fission_yeast_phenotype | 180 Other | fission_yeast_phenotype | 327 Other direct assay | fission_yeast_phenotype | 13 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 32 Quantitative PCR | fission_yeast_phenotype | 105 Reporter gene assay | fission_yeast_phenotype | 187 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 108 Substance quantification evidence | fission_yeast_phenotype | 334 Traceable Author Statement | fission_yeast_phenotype | 13 Transcript expression level evidence | fission_yeast_phenotype | 682 Western blot assay | fission_yeast_phenotype | 532 experimental evidence | gene_ex | 24645 expression microarray evidence | gene_ex | 1366 immunofluorescence evidence | gene_ex | 4 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 Northern assay evidence | gene_ex | 380 quantitative PCR | gene_ex | 15 reporter gene assay evidence | gene_ex | 24 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 37 RNA protection assay evidence | gene_ex | 6 Western blot evidence | gene_ex | 94 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 45 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 65 Inferred from Direct Assay | molecular_function | 1041 Inferred from Electronic Annotation | molecular_function | 3034 Inferred from Experiment | molecular_function | 16 Inferred from Genetic Interaction | molecular_function | 133 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 430 Inferred from Physical Interaction | molecular_function | 1114 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence Model | molecular_function | 342 Inferred from Sequence or Structural Similarity | molecular_function | 593 Inferred from Sequence Orthology | molecular_function | 1464 Non-traceable Author Statement | molecular_function | 235 Traceable Author Statement | molecular_function | 133 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 4 experimental evidence | PSI-MOD | 2464 Inferred from Direct Assay | PSI-MOD | 1366 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 (103 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | misc | 1 Non-traceable Author Statement | complementation | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | sequence | 2 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 4 immunofluorescence evidence | gene_ex | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 RNA protection assay evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Enzyme activity assay | fission_yeast_phenotype | 7 Particle size and count assay | fission_yeast_phenotype | 9 Traceable Author Statement | fission_yeast_phenotype | 13 Inferred from Sequence or Structural Similarity | genome_org | 13 Other direct assay | fission_yeast_phenotype | 13 in situ hybridization assay evidence | gene_ex | 14 quantitative PCR | gene_ex | 15 Inferred from Experiment | molecular_function | 16 gel electrophoresis evidence | fission_yeast_phenotype | 22 Inferred from Experiment | cellular_component | 23 Chromatography evidence | fission_yeast_phenotype | 23 reporter gene assay evidence | gene_ex | 24 inferred from Reviewed Computational Analysis | biological_process | 25 Plasmid maintenance assay evidence | fission_yeast_phenotype | 32 Inferred from Experiment | biological_process | 32 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 37 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 41 Inferred from Sequence or Structural Similarity | m_f_g | 45 Inferred from Sequence Model | cellular_component | 52 Inferred by Curator | molecular_function | 65 Inferred from Physical Interaction | cellular_component | 66 Inferred from Mutant Phenotype | cellular_component | 68 Inferred from Genetic Interaction | cellular_component | 73 Inferred from Physical Interaction | biological_process | 87 Western blot evidence | gene_ex | 94 Quantitative PCR | fission_yeast_phenotype | 105 Inferred from Sequence or Structural Similarity | warning | 105 Substance quantification | fission_yeast_phenotype | 108 Inferred from Expression Pattern | biological_process | 116 Cell Growth Assay | fission_yeast_phenotype | 132 Traceable Author Statement | molecular_function | 133 Inferred from Genetic Interaction | molecular_function | 133 Co-immunoprecipitation experiment | fission_yeast_phenotype | 134 microscopy | fission_yeast_phenotype | 150 Traceable Author Statement | cellular_component | 164 Northern assay evidence | fission_yeast_phenotype | 180 Reporter gene assay | fission_yeast_phenotype | 187 Inferred from Sequence Model | biological_process | 193 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 195 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 inferred from Reviewed Computational Analysis | cellular_component | 219 Gel electrophoresis evidence | fission_yeast_phenotype | 220 Non-traceable Author Statement | molecular_function | 235 competitive growth assay evidence | fission_yeast_phenotype | 239 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred by Curator | cellular_component | 249 Flow cytometry data | fission_yeast_phenotype | 310 Other | fission_yeast_phenotype | 327 Traceable Author Statement | biological_process | 333 Substance quantification evidence | fission_yeast_phenotype | 334 cell growth assay | fission_yeast_phenotype | 337 Inferred from Sequence Model | molecular_function | 342 Non-traceable Author Statement | cellular_component | 349 Inferred from Sequence or Structural Similarity | sequence | 355 Northern assay evidence | gene_ex | 380 Inferred from Mutant Phenotype | molecular_function | 430 Western blot assay | fission_yeast_phenotype | 532 Inferred from Sequence or Structural Similarity | molecular_function | 593 Inferred from Direct Assay | biological_process | 601 Enzyme assay data | fission_yeast_phenotype | 629 Inferred by Curator | biological_process | 646 Transcript expression level evidence | fission_yeast_phenotype | 682 Inferred from Sequence or Structural Similarity | cellular_component | 731 Inferred from Sequence or Structural Similarity | biological_process | 829 Inferred from Genetic Interaction | biological_process | 836 Inferred from Direct Assay | molecular_function | 1041 Inferred from Physical Interaction | molecular_function | 1114 Non-traceable Author Statement | biological_process | 1159 Inferred from Electronic Annotation | biological_process | 1204 Inferred from Direct Assay | PSI-MOD | 1366 expression microarray evidence | gene_ex | 1366 Inferred from Electronic Annotation | cellular_component | 1392 Inferred from Sequence Orthology | molecular_function | 1464 Inferred from Sequence Orthology | cellular_component | 2333 experimental evidence | PSI-MOD | 2464 Inferred from Electronic Annotation | molecular_function | 3034 Inferred from Sequence Orthology | biological_process | 3062 Inferred from Mutant Phenotype | biological_process | 3926 Cell growth assay | fission_yeast_phenotype | 7170 Inferred from Direct Assay | cellular_component | 9710 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 18860 experimental evidence | gene_ex | 24645 (103 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- cell growth assay | fission_yeast_phenotype | 337 Cell growth assay | fission_yeast_phenotype | 7170 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 195 Chromatography evidence | fission_yeast_phenotype | 23 Co-immunoprecipitation experiment | fission_yeast_phenotype | 134 competitive growth assay evidence | fission_yeast_phenotype | 239 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 41 Enzyme activity assay | fission_yeast_phenotype | 7 Enzyme assay data | fission_yeast_phenotype | 629 experimental evidence | gene_ex | 24645 experimental evidence | PSI-MOD | 2464 expression microarray evidence | gene_ex | 1366 Flow cytometry data | fission_yeast_phenotype | 310 gel electrophoresis evidence | fission_yeast_phenotype | 22 Gel electrophoresis evidence | fission_yeast_phenotype | 220 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 4 Inferred by Curator | biological_process | 646 Inferred by Curator | cellular_component | 249 Inferred by Curator | molecular_function | 65 Inferred from Direct Assay | biological_process | 601 Inferred from Direct Assay | cellular_component | 9710 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1041 Inferred from Direct Assay | PSI-MOD | 1366 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | biological_process | 1204 Inferred from Electronic Annotation | cellular_component | 1392 Inferred from Electronic Annotation | molecular_function | 3034 Inferred from Experiment | biological_process | 32 Inferred from Experiment | cellular_component | 23 Inferred from Experiment | molecular_function | 16 Inferred from Expression Pattern | biological_process | 116 Inferred from Genetic Interaction | biological_process | 836 Inferred from Genetic Interaction | cellular_component | 73 Inferred from Genetic Interaction | molecular_function | 133 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 3926 Inferred from Mutant Phenotype | cellular_component | 68 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 430 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 87 Inferred from Physical Interaction | cellular_component | 66 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 1114 inferred from Reviewed Computational Analysis | biological_process | 25 inferred from Reviewed Computational Analysis | cellular_component | 219 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence Model | biological_process | 193 Inferred from Sequence Model | cellular_component | 52 Inferred from Sequence Model | molecular_function | 342 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | biological_process | 829 Inferred from Sequence or Structural Similarity | cellular_component | 731 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 45 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 593 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence Orthology | biological_process | 3062 Inferred from Sequence Orthology | cellular_component | 2333 Inferred from Sequence Orthology | molecular_function | 1464 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 microscopy | fission_yeast_phenotype | 150 Microscopy | fission_yeast_phenotype | 18860 Non-traceable Author Statement | biological_process | 1159 Non-traceable Author Statement | cellular_component | 349 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 235 Northern assay evidence | fission_yeast_phenotype | 180 Northern assay evidence | gene_ex | 380 Other | fission_yeast_phenotype | 327 Other direct assay | fission_yeast_phenotype | 13 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 32 quantitative PCR | gene_ex | 15 Quantitative PCR | fission_yeast_phenotype | 105 Reporter gene assay | fission_yeast_phenotype | 187 reporter gene assay evidence | gene_ex | 24 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 37 RNA protection assay evidence | gene_ex | 6 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 108 Substance quantification evidence | fission_yeast_phenotype | 334 Traceable Author Statement | biological_process | 333 Traceable Author Statement | cellular_component | 164 Traceable Author Statement | fission_yeast_phenotype | 13 Traceable Author Statement | molecular_function | 133 Traceable Author Statement | PomBase family or domain | 4 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 Transcript expression level evidence | fission_yeast_phenotype | 682 Western blot assay | fission_yeast_phenotype | 532 Western blot evidence | gene_ex | 94 (103 rows) total: count -------- 160609 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 176 | PSI-MOD 443 | molecular_function 640 | cellular_component 1098 | biological_process 4114 | PomBase annotation extension terms 7899 | fission_yeast_phenotype (6 rows)