counts of all annotation by type:
count | cv_name
-------+--------------------------------------
2 | DNA_binding_specificity
20 | cat_act
20 | ex_tools
32 | pathway
94 | m_f_g
120 | subunit_composition
210 | complementation
225 | genome_org
276 | misc
423 | disease_associated
726 | name_description
839 | EC numbers
942 | sequence
1620 | warning
1885 | PomBase family or domain
5144 | PomBase gene characterisation status
7022 | PomBase gene products
8864 | molecular_function
11102 | PSI-MOD
12798 | biological_process
15562 | cellular_component
25473 | species_dist
33819 | fission_yeast_phenotype
40335 | gene_ex
(24 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Inferred by Curator | biological_process | 628
Inferred from Direct Assay | biological_process | 606
Inferred from Electronic Annotation | biological_process | 1092
Inferred from Experiment | biological_process | 40
Inferred from Expression Pattern | biological_process | 113
Inferred from Genetic Interaction | biological_process | 825
Inferred from Mutant Phenotype | biological_process | 3836
Inferred from Physical Interaction | biological_process | 87
inferred from Reviewed Computational Analysis | biological_process | 25
Inferred from Sequence Model | biological_process | 195
Inferred from Sequence or Structural Similarity | biological_process | 824
Inferred from Sequence Orthology | biological_process | 3049
Non-traceable Author Statement | biological_process | 1162
Traceable Author Statement | biological_process | 316
Inferred by Curator | cellular_component | 245
Inferred from Direct Assay | cellular_component | 9868
Inferred from Electronic Annotation | cellular_component | 1388
Inferred from Experiment | cellular_component | 26
Inferred from Genetic Interaction | cellular_component | 72
Inferred from Mutant Phenotype | cellular_component | 67
Inferred from Physical Interaction | cellular_component | 70
inferred from Reviewed Computational Analysis | cellular_component | 219
Inferred from Sequence Model | cellular_component | 53
Inferred from Sequence or Structural Similarity | cellular_component | 731
Inferred from Sequence Orthology | cellular_component | 2322
Non-traceable Author Statement | cellular_component | 344
Traceable Author Statement | cellular_component | 157
Non-traceable Author Statement | complementation | 1
cell growth assay | fission_yeast_phenotype | 372
Cell growth assay | fission_yeast_phenotype | 7745
Cell Growth Assay | fission_yeast_phenotype | 132
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 215
Chromatography evidence | fission_yeast_phenotype | 23
Co-immunoprecipitation experiment | fission_yeast_phenotype | 165
competitive growth assay evidence | fission_yeast_phenotype | 239
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 47
Enzyme assay data | fission_yeast_phenotype | 668
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 1
Flow cytometry data | fission_yeast_phenotype | 320
gel electrophoresis evidence | fission_yeast_phenotype | 34
Gel electrophoresis evidence | fission_yeast_phenotype | 264
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Mutant Phenotype | fission_yeast_phenotype | 3
microscopy | fission_yeast_phenotype | 164
Microscopy | fission_yeast_phenotype | 19155
Northern assay evidence | fission_yeast_phenotype | 178
Other | fission_yeast_phenotype | 338
Other direct assay | fission_yeast_phenotype | 13
Particle size and count assay | fission_yeast_phenotype | 9
Plasmid maintenance assay evidence | fission_yeast_phenotype | 32
Quantitative PCR | fission_yeast_phenotype | 109
Reporter gene assay | fission_yeast_phenotype | 196
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33
Substance quantification | fission_yeast_phenotype | 108
Substance quantification evidence | fission_yeast_phenotype | 384
Traceable Author Statement | fission_yeast_phenotype | 13
Transcript expression level evidence | fission_yeast_phenotype | 762
Western blot assay | fission_yeast_phenotype | 564
experimental evidence | gene_ex | 24645
expression microarray evidence | gene_ex | 1366
immunofluorescence evidence | gene_ex | 4
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
Northern assay evidence | gene_ex | 420
quantitative PCR | gene_ex | 15
reporter gene assay evidence | gene_ex | 26
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 37
RNA protection assay evidence | gene_ex | 15
Western blot evidence | gene_ex | 98
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 45
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 64
Inferred from Direct Assay | molecular_function | 1060
Inferred from Electronic Annotation | molecular_function | 3004
Inferred from Experiment | molecular_function | 16
Inferred from Genetic Interaction | molecular_function | 137
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 448
Inferred from Physical Interaction | molecular_function | 1134
inferred from Reviewed Computational Analysis | molecular_function | 240
Inferred from Sequence Model | molecular_function | 342
Inferred from Sequence or Structural Similarity | molecular_function | 587
Inferred from Sequence Orthology | molecular_function | 1465
Non-traceable Author Statement | molecular_function | 231
Traceable Author Statement | molecular_function | 135
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Traceable Author Statement | PomBase family or domain | 4
Western blot evidence | PomBase family or domain | 3
experimental evidence | PSI-MOD | 8143
Inferred from Direct Assay | PSI-MOD | 1371
Inferred from Sequence Model | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | PSI-MOD | 41
Traceable Author Statement | PSI-MOD | 1
Inferred from Direct Assay | sequence | 2
Inferred from Mutant Phenotype | sequence | 7
Inferred from Sequence or Structural Similarity | sequence | 356
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 3
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 105
(104 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Key Residues | molecular_function | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence Model | PSI-MOD | 1
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 1
Non-traceable Author Statement | complementation | 1
Inferred from Physical Interaction | misc | 2
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | sequence | 2
Western blot evidence | PomBase family or domain | 3
Inferred from Mutant Phenotype | fission_yeast_phenotype | 3
Inferred from Direct Assay | subunit_composition | 3
immunofluorescence evidence | gene_ex | 4
Traceable Author Statement | PomBase family or domain | 4
Inferred from Mutant Phenotype | misc | 4
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Mutant Phenotype | sequence | 7
Particle size and count assay | fission_yeast_phenotype | 9
Inferred from Sequence or Structural Similarity | genome_org | 13
Other direct assay | fission_yeast_phenotype | 13
Traceable Author Statement | fission_yeast_phenotype | 13
in situ hybridization assay evidence | gene_ex | 14
RNA protection assay evidence | gene_ex | 15
quantitative PCR | gene_ex | 15
Inferred from Experiment | molecular_function | 16
Chromatography evidence | fission_yeast_phenotype | 23
inferred from Reviewed Computational Analysis | biological_process | 25
Inferred from Experiment | cellular_component | 26
reporter gene assay evidence | gene_ex | 26
Plasmid maintenance assay evidence | fission_yeast_phenotype | 32
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33
gel electrophoresis evidence | fission_yeast_phenotype | 34
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 37
Inferred from Experiment | biological_process | 40
Inferred from Sequence or Structural Similarity | PSI-MOD | 41
Inferred from Sequence or Structural Similarity | m_f_g | 45
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 47
Inferred from Sequence Model | cellular_component | 53
Inferred by Curator | molecular_function | 64
Inferred from Mutant Phenotype | cellular_component | 67
Inferred from Physical Interaction | cellular_component | 70
Inferred from Genetic Interaction | cellular_component | 72
Inferred from Physical Interaction | biological_process | 87
Western blot evidence | gene_ex | 98
Inferred from Sequence or Structural Similarity | warning | 105
Substance quantification | fission_yeast_phenotype | 108
Quantitative PCR | fission_yeast_phenotype | 109
Inferred from Expression Pattern | biological_process | 113
Cell Growth Assay | fission_yeast_phenotype | 132
Traceable Author Statement | molecular_function | 135
Inferred from Genetic Interaction | molecular_function | 137
Traceable Author Statement | cellular_component | 157
microscopy | fission_yeast_phenotype | 164
Co-immunoprecipitation experiment | fission_yeast_phenotype | 165
Northern assay evidence | fission_yeast_phenotype | 178
Inferred from Sequence Model | biological_process | 195
Reporter gene assay | fission_yeast_phenotype | 196
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 215
inferred from Reviewed Computational Analysis | cellular_component | 219
Non-traceable Author Statement | molecular_function | 231
competitive growth assay evidence | fission_yeast_phenotype | 239
inferred from Reviewed Computational Analysis | molecular_function | 240
Inferred by Curator | cellular_component | 245
Gel electrophoresis evidence | fission_yeast_phenotype | 264
Traceable Author Statement | biological_process | 316
Flow cytometry data | fission_yeast_phenotype | 320
Other | fission_yeast_phenotype | 338
Inferred from Sequence Model | molecular_function | 342
Non-traceable Author Statement | cellular_component | 344
Inferred from Sequence or Structural Similarity | sequence | 356
cell growth assay | fission_yeast_phenotype | 372
Substance quantification evidence | fission_yeast_phenotype | 384
Northern assay evidence | gene_ex | 420
Inferred from Mutant Phenotype | molecular_function | 448
Western blot assay | fission_yeast_phenotype | 564
Inferred from Sequence or Structural Similarity | molecular_function | 587
Inferred from Direct Assay | biological_process | 606
Inferred by Curator | biological_process | 628
Enzyme assay data | fission_yeast_phenotype | 668
Inferred from Sequence or Structural Similarity | cellular_component | 731
Transcript expression level evidence | fission_yeast_phenotype | 762
Inferred from Sequence or Structural Similarity | biological_process | 824
Inferred from Genetic Interaction | biological_process | 825
Inferred from Direct Assay | molecular_function | 1060
Inferred from Electronic Annotation | biological_process | 1092
Inferred from Physical Interaction | molecular_function | 1134
Non-traceable Author Statement | biological_process | 1162
expression microarray evidence | gene_ex | 1366
Inferred from Direct Assay | PSI-MOD | 1371
Inferred from Electronic Annotation | cellular_component | 1388
Inferred from Sequence Orthology | molecular_function | 1465
Inferred from Sequence Orthology | cellular_component | 2322
Inferred from Electronic Annotation | molecular_function | 3004
Inferred from Sequence Orthology | biological_process | 3049
Inferred from Mutant Phenotype | biological_process | 3836
Cell growth assay | fission_yeast_phenotype | 7745
experimental evidence | PSI-MOD | 8143
Inferred from Direct Assay | cellular_component | 9868
mass spectrometry evidence | gene_ex | 13682
Microscopy | fission_yeast_phenotype | 19155
experimental evidence | gene_ex | 24645
(104 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
cell growth assay | fission_yeast_phenotype | 372
Cell growth assay | fission_yeast_phenotype | 7745
Cell Growth Assay | fission_yeast_phenotype | 132
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 215
Chromatography evidence | fission_yeast_phenotype | 23
Co-immunoprecipitation experiment | fission_yeast_phenotype | 165
competitive growth assay evidence | fission_yeast_phenotype | 239
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 47
Enzyme assay data | fission_yeast_phenotype | 668
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 1
experimental evidence | gene_ex | 24645
experimental evidence | PSI-MOD | 8143
expression microarray evidence | gene_ex | 1366
Flow cytometry data | fission_yeast_phenotype | 320
gel electrophoresis evidence | fission_yeast_phenotype | 34
Gel electrophoresis evidence | fission_yeast_phenotype | 264
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 4
Inferred by Curator | biological_process | 628
Inferred by Curator | cellular_component | 245
Inferred by Curator | molecular_function | 64
Inferred from Direct Assay | biological_process | 606
Inferred from Direct Assay | cellular_component | 9868
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1060
Inferred from Direct Assay | PSI-MOD | 1371
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | subunit_composition | 3
Inferred from Electronic Annotation | biological_process | 1092
Inferred from Electronic Annotation | cellular_component | 1388
Inferred from Electronic Annotation | molecular_function | 3004
Inferred from Experiment | biological_process | 40
Inferred from Experiment | cellular_component | 26
Inferred from Experiment | molecular_function | 16
Inferred from Expression Pattern | biological_process | 113
Inferred from Genetic Interaction | biological_process | 825
Inferred from Genetic Interaction | cellular_component | 72
Inferred from Genetic Interaction | molecular_function | 137
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | biological_process | 3836
Inferred from Mutant Phenotype | cellular_component | 67
Inferred from Mutant Phenotype | fission_yeast_phenotype | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 448
Inferred from Mutant Phenotype | sequence | 7
Inferred from Physical Interaction | biological_process | 87
Inferred from Physical Interaction | cellular_component | 70
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 1134
inferred from Reviewed Computational Analysis | biological_process | 25
inferred from Reviewed Computational Analysis | cellular_component | 219
inferred from Reviewed Computational Analysis | molecular_function | 240
Inferred from Sequence Model | biological_process | 195
Inferred from Sequence Model | cellular_component | 53
Inferred from Sequence Model | molecular_function | 342
Inferred from Sequence Model | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | biological_process | 824
Inferred from Sequence or Structural Similarity | cellular_component | 731
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 45
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 587
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Sequence or Structural Similarity | PSI-MOD | 41
Inferred from Sequence or Structural Similarity | sequence | 356
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 105
Inferred from Sequence Orthology | biological_process | 3049
Inferred from Sequence Orthology | cellular_component | 2322
Inferred from Sequence Orthology | molecular_function | 1465
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
microscopy | fission_yeast_phenotype | 164
Microscopy | fission_yeast_phenotype | 19155
Non-traceable Author Statement | biological_process | 1162
Non-traceable Author Statement | cellular_component | 344
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 231
Northern assay evidence | fission_yeast_phenotype | 178
Northern assay evidence | gene_ex | 420
Other | fission_yeast_phenotype | 338
Other direct assay | fission_yeast_phenotype | 13
Particle size and count assay | fission_yeast_phenotype | 9
Plasmid maintenance assay evidence | fission_yeast_phenotype | 32
quantitative PCR | gene_ex | 15
Quantitative PCR | fission_yeast_phenotype | 109
Reporter gene assay | fission_yeast_phenotype | 196
reporter gene assay evidence | gene_ex | 26
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 37
RNA protection assay evidence | gene_ex | 15
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33
Substance quantification | fission_yeast_phenotype | 108
Substance quantification evidence | fission_yeast_phenotype | 384
Traceable Author Statement | biological_process | 316
Traceable Author Statement | cellular_component | 157
Traceable Author Statement | fission_yeast_phenotype | 13
Traceable Author Statement | molecular_function | 135
Traceable Author Statement | PomBase family or domain | 4
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | sequence | 2
Transcript expression level evidence | fission_yeast_phenotype | 762
Western blot assay | fission_yeast_phenotype | 564
Western blot evidence | gene_ex | 98
Western blot evidence | PomBase family or domain | 3
(104 rows)
total:
count
--------
167553
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
184 | PSI-MOD
486 | molecular_function
717 | cellular_component
1139 | biological_process
4567 | PomBase annotation extension terms
8385 | fission_yeast_phenotype
(6 rows)
total
-------
15478
(1 row)