counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 20 | cat_act 21 | ex_tools 32 | pathway 94 | m_f_g 128 | subunit_composition 226 | genome_org 230 | complementation 277 | misc 429 | disease_associated 757 | name_description 837 | EC numbers 942 | sequence 1622 | warning 1881 | PomBase family or domain 5145 | PomBase gene characterisation status 7022 | PomBase gene products 8901 | molecular_function 11253 | PSI-MOD 12723 | biological_process 15608 | cellular_component 25472 | species_dist 35113 | fission_yeast_phenotype 40386 | gene_ex (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence Model | biological_process | 205 Inferred from Sequence or Structural Similarity | biological_process | 820 Inferred from Sequence Orthology | biological_process | 3052 No biological Data available | biological_process | 4 Inferred by Curator | biological_process | 624 Inferred from Direct Assay | biological_process | 600 Inferred from Genetic Interaction | biological_process | 825 Inferred from Electronic Annotation | biological_process | 1111 Non-traceable Author Statement | biological_process | 1120 Traceable Author Statement | biological_process | 312 Inferred from Mutant Phenotype | biological_process | 3779 inferred from Reviewed Computational Analysis | biological_process | 25 Inferred from Physical Interaction | biological_process | 87 Inferred from Experiment | biological_process | 47 Inferred from Expression Pattern | biological_process | 112 Inferred from Physical Interaction | cellular_component | 71 Inferred from Electronic Annotation | cellular_component | 1386 Inferred from Sequence Orthology | cellular_component | 2322 Inferred from Sequence or Structural Similarity | cellular_component | 724 Inferred from Experiment | cellular_component | 26 Traceable Author Statement | cellular_component | 154 Inferred from Direct Assay | cellular_component | 9918 Inferred by Curator | cellular_component | 246 Inferred from Genetic Interaction | cellular_component | 74 Non-traceable Author Statement | cellular_component | 345 No biological Data available | cellular_component | 1 inferred from Reviewed Computational Analysis | cellular_component | 219 Inferred from Sequence Model | cellular_component | 53 Inferred from Mutant Phenotype | cellular_component | 69 Non-traceable Author Statement | complementation | 1 Gel electrophoresis evidence | fission_yeast_phenotype | 380 Other direct assay | fission_yeast_phenotype | 13 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Traceable Author Statement | fission_yeast_phenotype | 13 Western blot assay | fission_yeast_phenotype | 598 Transcript expression level evidence | fission_yeast_phenotype | 808 competitive growth assay evidence | fission_yeast_phenotype | 239 Chromatography evidence | fission_yeast_phenotype | 23 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 22 Reporter gene assay | fission_yeast_phenotype | 204 Plasmid maintenance assay evidence | fission_yeast_phenotype | 33 Flow cytometry data | fission_yeast_phenotype | 343 Enzyme assay data | fission_yeast_phenotype | 694 Quantitative PCR | fission_yeast_phenotype | 109 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 230 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Microscopy | fission_yeast_phenotype | 20707 Northern assay evidence | fission_yeast_phenotype | 178 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 49 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Substance quantification | fission_yeast_phenotype | 108 Cell growth assay | fission_yeast_phenotype | 8858 Other | fission_yeast_phenotype | 382 Substance quantification evidence | fission_yeast_phenotype | 394 Co-immunoprecipitation experiment | fission_yeast_phenotype | 171 western blot evidence | fission_yeast_phenotype | 1 Northern assay evidence | gene_ex | 437 expression microarray evidence | gene_ex | 1370 quantitative PCR | gene_ex | 19 mass spectrometry evidence | gene_ex | 13682 reporter gene assay evidence | gene_ex | 32 experimental evidence | gene_ex | 24641 immunofluorescence evidence | gene_ex | 4 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 38 Western blot evidence | gene_ex | 115 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 45 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | molecular_function | 132 Non-traceable Author Statement | molecular_function | 230 Inferred from Mutant Phenotype | molecular_function | 454 Inferred from Physical Interaction | molecular_function | 1132 Inferred from Direct Assay | molecular_function | 1105 Inferred from Experiment | molecular_function | 18 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence Model | molecular_function | 345 Inferred from Electronic Annotation | molecular_function | 2986 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred by Curator | molecular_function | 64 Inferred from Sequence or Structural Similarity | molecular_function | 582 Inferred from Genetic Interaction | molecular_function | 142 Inferred from Sequence Orthology | molecular_function | 1467 No biological Data available | molecular_function | 3 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8143 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Direct Assay | PSI-MOD | 1523 Inferred from Mutant Phenotype | sequence | 7 Inferred from Direct Assay | sequence | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 (105 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | misc | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 western blot evidence | fission_yeast_phenotype | 1 Inferred from Sequence Model | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 No biological Data available | cellular_component | 1 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | sequence | 2 Traceable Author Statement | sequence | 2 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Inferred from Physical Interaction | misc | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 No biological Data available | molecular_function | 3 Inferred from Direct Assay | subunit_composition | 3 No biological Data available | biological_process | 4 Inferred from Mutant Phenotype | misc | 4 immunofluorescence evidence | gene_ex | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Mutant Phenotype | sequence | 7 Particle size and count assay | fission_yeast_phenotype | 9 Inferred from Sequence or Structural Similarity | genome_org | 13 Other direct assay | fission_yeast_phenotype | 13 Traceable Author Statement | fission_yeast_phenotype | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Inferred from Experiment | molecular_function | 18 quantitative PCR | gene_ex | 19 gel electrophoresis evidence | fission_yeast_phenotype | 22 Chromatography evidence | fission_yeast_phenotype | 23 inferred from Reviewed Computational Analysis | biological_process | 25 Inferred from Experiment | cellular_component | 26 reporter gene assay evidence | gene_ex | 32 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 33 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 38 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | m_f_g | 45 Inferred from Experiment | biological_process | 47 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 49 Inferred from Sequence Model | cellular_component | 53 Inferred by Curator | molecular_function | 64 Inferred from Mutant Phenotype | cellular_component | 69 Inferred from Physical Interaction | cellular_component | 71 Inferred from Genetic Interaction | cellular_component | 74 Inferred from Physical Interaction | biological_process | 87 Inferred from Sequence or Structural Similarity | warning | 105 Substance quantification | fission_yeast_phenotype | 108 Quantitative PCR | fission_yeast_phenotype | 109 Inferred from Expression Pattern | biological_process | 112 Western blot evidence | gene_ex | 115 Cell Growth Assay | fission_yeast_phenotype | 132 Traceable Author Statement | molecular_function | 132 Inferred from Genetic Interaction | molecular_function | 142 Traceable Author Statement | cellular_component | 154 Co-immunoprecipitation experiment | fission_yeast_phenotype | 171 Northern assay evidence | fission_yeast_phenotype | 178 Reporter gene assay | fission_yeast_phenotype | 204 Inferred from Sequence Model | biological_process | 205 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 inferred from Reviewed Computational Analysis | cellular_component | 219 Non-traceable Author Statement | molecular_function | 230 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 230 competitive growth assay evidence | fission_yeast_phenotype | 239 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred by Curator | cellular_component | 246 Traceable Author Statement | biological_process | 312 Flow cytometry data | fission_yeast_phenotype | 343 Non-traceable Author Statement | cellular_component | 345 Inferred from Sequence Model | molecular_function | 345 Inferred from Sequence or Structural Similarity | sequence | 356 Gel electrophoresis evidence | fission_yeast_phenotype | 380 Other | fission_yeast_phenotype | 382 Substance quantification evidence | fission_yeast_phenotype | 394 Northern assay evidence | gene_ex | 437 Inferred from Mutant Phenotype | molecular_function | 454 Inferred from Sequence or Structural Similarity | molecular_function | 582 Western blot assay | fission_yeast_phenotype | 598 Inferred from Direct Assay | biological_process | 600 Inferred by Curator | biological_process | 624 Enzyme assay data | fission_yeast_phenotype | 694 Inferred from Sequence or Structural Similarity | cellular_component | 724 Transcript expression level evidence | fission_yeast_phenotype | 808 Inferred from Sequence or Structural Similarity | biological_process | 820 Inferred from Genetic Interaction | biological_process | 825 Inferred from Direct Assay | molecular_function | 1105 Inferred from Electronic Annotation | biological_process | 1111 Non-traceable Author Statement | biological_process | 1120 Inferred from Physical Interaction | molecular_function | 1132 expression microarray evidence | gene_ex | 1370 Inferred from Electronic Annotation | cellular_component | 1386 Inferred from Sequence Orthology | molecular_function | 1467 Inferred from Direct Assay | PSI-MOD | 1523 Inferred from Sequence Orthology | cellular_component | 2322 Inferred from Electronic Annotation | molecular_function | 2986 Inferred from Sequence Orthology | biological_process | 3052 Inferred from Mutant Phenotype | biological_process | 3779 experimental evidence | PSI-MOD | 8143 Cell growth assay | fission_yeast_phenotype | 8858 Inferred from Direct Assay | cellular_component | 9918 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 20707 experimental evidence | gene_ex | 24641 (105 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 8858 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 230 Chromatography evidence | fission_yeast_phenotype | 23 Co-immunoprecipitation experiment | fission_yeast_phenotype | 171 competitive growth assay evidence | fission_yeast_phenotype | 239 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 49 Enzyme assay data | fission_yeast_phenotype | 694 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 experimental evidence | PSI-MOD | 8143 experimental evidence | gene_ex | 24641 expression microarray evidence | gene_ex | 1370 Flow cytometry data | fission_yeast_phenotype | 343 gel electrophoresis evidence | fission_yeast_phenotype | 22 Gel electrophoresis evidence | fission_yeast_phenotype | 380 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 4 Inferred by Curator | molecular_function | 64 Inferred by Curator | biological_process | 624 Inferred by Curator | cellular_component | 246 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | PSI-MOD | 1523 Inferred from Direct Assay | cellular_component | 9918 Inferred from Direct Assay | biological_process | 600 Inferred from Direct Assay | molecular_function | 1105 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | cellular_component | 1386 Inferred from Electronic Annotation | molecular_function | 2986 Inferred from Electronic Annotation | biological_process | 1111 Inferred from Experiment | biological_process | 47 Inferred from Experiment | cellular_component | 26 Inferred from Experiment | molecular_function | 18 Inferred from Expression Pattern | biological_process | 112 Inferred from Genetic Interaction | cellular_component | 74 Inferred from Genetic Interaction | biological_process | 825 Inferred from Genetic Interaction | molecular_function | 142 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 454 Inferred from Mutant Phenotype | cellular_component | 69 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | biological_process | 3779 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 87 Inferred from Physical Interaction | molecular_function | 1132 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | cellular_component | 71 inferred from Reviewed Computational Analysis | cellular_component | 219 inferred from Reviewed Computational Analysis | molecular_function | 240 inferred from Reviewed Computational Analysis | biological_process | 25 Inferred from Sequence Model | molecular_function | 345 Inferred from Sequence Model | cellular_component | 53 Inferred from Sequence Model | biological_process | 205 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | m_f_g | 45 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | cellular_component | 724 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | molecular_function | 582 Inferred from Sequence or Structural Similarity | biological_process | 820 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence Orthology | biological_process | 3052 Inferred from Sequence Orthology | cellular_component | 2322 Inferred from Sequence Orthology | molecular_function | 1467 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 20707 No biological Data available | molecular_function | 3 No biological Data available | cellular_component | 1 No biological Data available | biological_process | 4 Non-traceable Author Statement | cellular_component | 345 Non-traceable Author Statement | biological_process | 1120 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 230 Northern assay evidence | fission_yeast_phenotype | 178 Northern assay evidence | gene_ex | 437 Other | fission_yeast_phenotype | 382 Other direct assay | fission_yeast_phenotype | 13 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 33 quantitative PCR | gene_ex | 19 Quantitative PCR | fission_yeast_phenotype | 109 Reporter gene assay | fission_yeast_phenotype | 204 reporter gene assay evidence | gene_ex | 32 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 38 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 108 Substance quantification evidence | fission_yeast_phenotype | 394 Traceable Author Statement | biological_process | 312 Traceable Author Statement | molecular_function | 132 Traceable Author Statement | fission_yeast_phenotype | 13 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | cellular_component | 154 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | sequence | 2 Transcript expression level evidence | fission_yeast_phenotype | 808 Western blot assay | fission_yeast_phenotype | 598 western blot evidence | fission_yeast_phenotype | 1 Western blot evidence | gene_ex | 115 (105 rows) total: count -------- 169121 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 322 | PSI-MOD 518 | molecular_function 787 | cellular_component 1226 | biological_process 4882 | PomBase annotation extension terms 9089 | fission_yeast_phenotype (6 rows) total ------- 16824 (1 row)