counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 21 | ex_tools 24 | cat_act 32 | pathway 89 | m_f_g 131 | subunit_composition 230 | genome_org 251 | complementation 293 | misc 434 | disease_associated 787 | name_description 837 | EC numbers 943 | sequence 1616 | warning 1868 | PomBase family or domain 5145 | PomBase gene characterisation status 7022 | PomBase gene products 9031 | molecular_function 11265 | PSI-MOD 12932 | biological_process 15615 | cellular_component 24538 | species_dist 36382 | fission_yeast_phenotype 40410 | gene_ex (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence Model | biological_process | 206 Inferred from Sequence or Structural Similarity | biological_process | 814 Inferred from Sequence Orthology | biological_process | 3060 No biological Data available | biological_process | 4 Inferred by Curator | biological_process | 629 Inferred from Direct Assay | biological_process | 620 Inferred from Genetic Interaction | biological_process | 819 Inferred from Electronic Annotation | biological_process | 1314 Non-traceable Author Statement | biological_process | 1099 Traceable Author Statement | biological_process | 303 Inferred from Mutant Phenotype | biological_process | 3808 inferred from Reviewed Computational Analysis | biological_process | 25 Inferred from Physical Interaction | biological_process | 87 Inferred from Experiment | biological_process | 48 Inferred from Expression Pattern | biological_process | 96 Inferred from Physical Interaction | cellular_component | 71 Inferred from Electronic Annotation | cellular_component | 1347 Inferred from Sequence Orthology | cellular_component | 2348 Inferred from Sequence or Structural Similarity | cellular_component | 720 Inferred from Experiment | cellular_component | 24 Traceable Author Statement | cellular_component | 153 Inferred from Direct Assay | cellular_component | 9938 Inferred by Curator | cellular_component | 252 Inferred from Genetic Interaction | cellular_component | 74 Non-traceable Author Statement | cellular_component | 339 No biological Data available | cellular_component | 1 inferred from Reviewed Computational Analysis | cellular_component | 219 Inferred from Sequence Model | cellular_component | 51 Inferred from Mutant Phenotype | cellular_component | 78 Non-traceable Author Statement | complementation | 1 Gel electrophoresis evidence | fission_yeast_phenotype | 719 Other direct assay | fission_yeast_phenotype | 13 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Traceable Author Statement | fission_yeast_phenotype | 1 Western blot assay | fission_yeast_phenotype | 630 Transcript expression level evidence | fission_yeast_phenotype | 866 competitive growth assay evidence | fission_yeast_phenotype | 239 Chromatography evidence | fission_yeast_phenotype | 23 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 22 Reporter gene assay | fission_yeast_phenotype | 228 Plasmid maintenance assay evidence | fission_yeast_phenotype | 33 Flow cytometry data | fission_yeast_phenotype | 357 Enzyme assay data | fission_yeast_phenotype | 737 Quantitative PCR | fission_yeast_phenotype | 109 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 232 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Microscopy | fission_yeast_phenotype | 21004 Northern assay evidence | fission_yeast_phenotype | 178 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 78 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Substance quantification | fission_yeast_phenotype | 108 Cell growth assay | fission_yeast_phenotype | 9239 Other | fission_yeast_phenotype | 436 Substance quantification evidence | fission_yeast_phenotype | 407 Co-immunoprecipitation experiment | fission_yeast_phenotype | 167 western blot evidence | fission_yeast_phenotype | 1 Northern assay evidence | gene_ex | 451 expression microarray evidence | gene_ex | 1370 quantitative PCR | gene_ex | 20 mass spectrometry evidence | gene_ex | 13682 reporter gene assay evidence | gene_ex | 32 experimental evidence | gene_ex | 24640 immunofluorescence evidence | gene_ex | 4 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 38 Western blot evidence | gene_ex | 125 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | molecular_function | 132 Non-traceable Author Statement | molecular_function | 229 Inferred from Mutant Phenotype | molecular_function | 465 Inferred from Physical Interaction | molecular_function | 1210 Inferred from Direct Assay | molecular_function | 1142 Inferred from Experiment | molecular_function | 18 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence Model | molecular_function | 348 Inferred from Electronic Annotation | molecular_function | 2969 inferred from Reviewed Computational Analysis | molecular_function | 239 Inferred by Curator | molecular_function | 63 Inferred from Sequence or Structural Similarity | molecular_function | 588 Inferred from Genetic Interaction | molecular_function | 145 Inferred from Sequence Orthology | molecular_function | 1479 No biological Data available | molecular_function | 3 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8143 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Direct Assay | PSI-MOD | 1535 Inferred from Mutant Phenotype | sequence | 7 Inferred from Direct Assay | sequence | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 (105 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Traceable Author Statement | fission_yeast_phenotype | 1 No biological Data available | cellular_component | 1 western blot evidence | fission_yeast_phenotype | 1 Inferred from Sequence Model | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | sequence | 2 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 No biological Data available | molecular_function | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Mutant Phenotype | misc | 4 No biological Data available | biological_process | 4 immunofluorescence evidence | gene_ex | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Mutant Phenotype | sequence | 7 Particle size and count assay | fission_yeast_phenotype | 9 Other direct assay | fission_yeast_phenotype | 13 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Inferred from Experiment | molecular_function | 18 quantitative PCR | gene_ex | 20 gel electrophoresis evidence | fission_yeast_phenotype | 22 Chromatography evidence | fission_yeast_phenotype | 23 Inferred from Experiment | cellular_component | 24 inferred from Reviewed Computational Analysis | biological_process | 25 reporter gene assay evidence | gene_ex | 32 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 33 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 38 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Experiment | biological_process | 48 Inferred from Sequence Model | cellular_component | 51 Inferred by Curator | molecular_function | 63 Inferred from Physical Interaction | cellular_component | 71 Inferred from Genetic Interaction | cellular_component | 74 Inferred from Mutant Phenotype | cellular_component | 78 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 78 Inferred from Physical Interaction | biological_process | 87 Inferred from Expression Pattern | biological_process | 96 Inferred from Sequence or Structural Similarity | warning | 105 Substance quantification | fission_yeast_phenotype | 108 Quantitative PCR | fission_yeast_phenotype | 109 Western blot evidence | gene_ex | 125 Cell Growth Assay | fission_yeast_phenotype | 132 Traceable Author Statement | molecular_function | 132 Inferred from Genetic Interaction | molecular_function | 145 Traceable Author Statement | cellular_component | 153 Co-immunoprecipitation experiment | fission_yeast_phenotype | 167 Northern assay evidence | fission_yeast_phenotype | 178 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Sequence Model | biological_process | 206 inferred from Reviewed Computational Analysis | cellular_component | 219 Reporter gene assay | fission_yeast_phenotype | 228 Non-traceable Author Statement | molecular_function | 229 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 232 inferred from Reviewed Computational Analysis | molecular_function | 239 competitive growth assay evidence | fission_yeast_phenotype | 239 Inferred by Curator | cellular_component | 252 Traceable Author Statement | biological_process | 303 Non-traceable Author Statement | cellular_component | 339 Inferred from Sequence Model | molecular_function | 348 Inferred from Sequence or Structural Similarity | sequence | 356 Flow cytometry data | fission_yeast_phenotype | 357 Substance quantification evidence | fission_yeast_phenotype | 407 Other | fission_yeast_phenotype | 436 Northern assay evidence | gene_ex | 451 Inferred from Mutant Phenotype | molecular_function | 465 Inferred from Sequence or Structural Similarity | molecular_function | 588 Inferred from Direct Assay | biological_process | 620 Inferred by Curator | biological_process | 629 Western blot assay | fission_yeast_phenotype | 630 Gel electrophoresis evidence | fission_yeast_phenotype | 719 Inferred from Sequence or Structural Similarity | cellular_component | 720 Enzyme assay data | fission_yeast_phenotype | 737 Inferred from Sequence or Structural Similarity | biological_process | 814 Inferred from Genetic Interaction | biological_process | 819 Transcript expression level evidence | fission_yeast_phenotype | 866 Non-traceable Author Statement | biological_process | 1099 Inferred from Direct Assay | molecular_function | 1142 Inferred from Physical Interaction | molecular_function | 1210 Inferred from Electronic Annotation | biological_process | 1314 Inferred from Electronic Annotation | cellular_component | 1347 expression microarray evidence | gene_ex | 1370 Inferred from Sequence Orthology | molecular_function | 1479 Inferred from Direct Assay | PSI-MOD | 1535 Inferred from Sequence Orthology | cellular_component | 2348 Inferred from Electronic Annotation | molecular_function | 2969 Inferred from Sequence Orthology | biological_process | 3060 Inferred from Mutant Phenotype | biological_process | 3808 experimental evidence | PSI-MOD | 8143 Cell growth assay | fission_yeast_phenotype | 9239 Inferred from Direct Assay | cellular_component | 9938 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 21004 experimental evidence | gene_ex | 24640 (105 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 9239 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 232 Chromatography evidence | fission_yeast_phenotype | 23 Co-immunoprecipitation experiment | fission_yeast_phenotype | 167 competitive growth assay evidence | fission_yeast_phenotype | 239 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 78 Enzyme assay data | fission_yeast_phenotype | 737 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 experimental evidence | PSI-MOD | 8143 experimental evidence | gene_ex | 24640 expression microarray evidence | gene_ex | 1370 Flow cytometry data | fission_yeast_phenotype | 357 gel electrophoresis evidence | fission_yeast_phenotype | 22 Gel electrophoresis evidence | fission_yeast_phenotype | 719 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 4 Inferred by Curator | molecular_function | 63 Inferred by Curator | biological_process | 629 Inferred by Curator | cellular_component | 252 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | PSI-MOD | 1535 Inferred from Direct Assay | cellular_component | 9938 Inferred from Direct Assay | biological_process | 620 Inferred from Direct Assay | molecular_function | 1142 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | cellular_component | 1347 Inferred from Electronic Annotation | molecular_function | 2969 Inferred from Electronic Annotation | biological_process | 1314 Inferred from Experiment | biological_process | 48 Inferred from Experiment | cellular_component | 24 Inferred from Experiment | molecular_function | 18 Inferred from Expression Pattern | biological_process | 96 Inferred from Genetic Interaction | cellular_component | 74 Inferred from Genetic Interaction | biological_process | 819 Inferred from Genetic Interaction | molecular_function | 145 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 465 Inferred from Mutant Phenotype | cellular_component | 78 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | biological_process | 3808 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 87 Inferred from Physical Interaction | molecular_function | 1210 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | cellular_component | 71 inferred from Reviewed Computational Analysis | cellular_component | 219 inferred from Reviewed Computational Analysis | molecular_function | 239 inferred from Reviewed Computational Analysis | biological_process | 25 Inferred from Sequence Model | molecular_function | 348 Inferred from Sequence Model | cellular_component | 51 Inferred from Sequence Model | biological_process | 206 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | cellular_component | 720 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | molecular_function | 588 Inferred from Sequence or Structural Similarity | biological_process | 814 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence Orthology | biological_process | 3060 Inferred from Sequence Orthology | cellular_component | 2348 Inferred from Sequence Orthology | molecular_function | 1479 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 21004 No biological Data available | molecular_function | 3 No biological Data available | cellular_component | 1 No biological Data available | biological_process | 4 Non-traceable Author Statement | cellular_component | 339 Non-traceable Author Statement | biological_process | 1099 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 229 Northern assay evidence | fission_yeast_phenotype | 178 Northern assay evidence | gene_ex | 451 Other | fission_yeast_phenotype | 436 Other direct assay | fission_yeast_phenotype | 13 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 33 quantitative PCR | gene_ex | 20 Quantitative PCR | fission_yeast_phenotype | 109 Reporter gene assay | fission_yeast_phenotype | 228 reporter gene assay evidence | gene_ex | 32 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 38 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 108 Substance quantification evidence | fission_yeast_phenotype | 407 Traceable Author Statement | biological_process | 303 Traceable Author Statement | molecular_function | 132 Traceable Author Statement | fission_yeast_phenotype | 1 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | cellular_component | 153 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | sequence | 2 Transcript expression level evidence | fission_yeast_phenotype | 866 Western blot assay | fission_yeast_phenotype | 630 western blot evidence | fission_yeast_phenotype | 1 Western blot evidence | gene_ex | 125 (105 rows) total: count -------- 169898 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 329 | PSI-MOD 566 | molecular_function 832 | cellular_component 1308 | biological_process 5260 | PomBase annotation extension terms 9851 | fission_yeast_phenotype (6 rows) total ------- 18146 (1 row)