counts of all annotation by type:
count | cv_name
-------+--------------------------------------
2 | DNA_binding_specificity
21 | ex_tools
24 | cat_act
32 | pathway
89 | m_f_g
131 | subunit_composition
230 | genome_org
251 | complementation
293 | misc
434 | disease_associated
787 | name_description
837 | EC numbers
943 | sequence
1616 | warning
1868 | PomBase family or domain
5145 | PomBase gene characterisation status
7022 | PomBase gene products
9031 | molecular_function
11265 | PSI-MOD
12932 | biological_process
15615 | cellular_component
24538 | species_dist
36382 | fission_yeast_phenotype
40410 | gene_ex
(24 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Inferred from Sequence Model | biological_process | 206
Inferred from Sequence or Structural Similarity | biological_process | 814
Inferred from Sequence Orthology | biological_process | 3060
No biological Data available | biological_process | 4
Inferred by Curator | biological_process | 629
Inferred from Direct Assay | biological_process | 620
Inferred from Genetic Interaction | biological_process | 819
Inferred from Electronic Annotation | biological_process | 1314
Non-traceable Author Statement | biological_process | 1099
Traceable Author Statement | biological_process | 303
Inferred from Mutant Phenotype | biological_process | 3808
inferred from Reviewed Computational Analysis | biological_process | 25
Inferred from Physical Interaction | biological_process | 87
Inferred from Experiment | biological_process | 48
Inferred from Expression Pattern | biological_process | 96
Inferred from Physical Interaction | cellular_component | 71
Inferred from Electronic Annotation | cellular_component | 1347
Inferred from Sequence Orthology | cellular_component | 2348
Inferred from Sequence or Structural Similarity | cellular_component | 720
Inferred from Experiment | cellular_component | 24
Traceable Author Statement | cellular_component | 153
Inferred from Direct Assay | cellular_component | 9938
Inferred by Curator | cellular_component | 252
Inferred from Genetic Interaction | cellular_component | 74
Non-traceable Author Statement | cellular_component | 339
No biological Data available | cellular_component | 1
inferred from Reviewed Computational Analysis | cellular_component | 219
Inferred from Sequence Model | cellular_component | 51
Inferred from Mutant Phenotype | cellular_component | 78
Non-traceable Author Statement | complementation | 1
Gel electrophoresis evidence | fission_yeast_phenotype | 719
Other direct assay | fission_yeast_phenotype | 13
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Traceable Author Statement | fission_yeast_phenotype | 1
Western blot assay | fission_yeast_phenotype | 630
Transcript expression level evidence | fission_yeast_phenotype | 866
competitive growth assay evidence | fission_yeast_phenotype | 239
Chromatography evidence | fission_yeast_phenotype | 23
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33
Particle size and count assay | fission_yeast_phenotype | 9
gel electrophoresis evidence | fission_yeast_phenotype | 22
Reporter gene assay | fission_yeast_phenotype | 228
Plasmid maintenance assay evidence | fission_yeast_phenotype | 33
Flow cytometry data | fission_yeast_phenotype | 357
Enzyme assay data | fission_yeast_phenotype | 737
Quantitative PCR | fission_yeast_phenotype | 109
Cell Growth Assay | fission_yeast_phenotype | 132
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 232
Inferred from Mutant Phenotype | fission_yeast_phenotype | 3
Microscopy | fission_yeast_phenotype | 21004
Northern assay evidence | fission_yeast_phenotype | 178
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 78
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2
Substance quantification | fission_yeast_phenotype | 108
Cell growth assay | fission_yeast_phenotype | 9239
Other | fission_yeast_phenotype | 436
Substance quantification evidence | fission_yeast_phenotype | 407
Co-immunoprecipitation experiment | fission_yeast_phenotype | 167
western blot evidence | fission_yeast_phenotype | 1
Northern assay evidence | gene_ex | 451
expression microarray evidence | gene_ex | 1370
quantitative PCR | gene_ex | 20
mass spectrometry evidence | gene_ex | 13682
reporter gene assay evidence | gene_ex | 32
experimental evidence | gene_ex | 24640
immunofluorescence evidence | gene_ex | 4
in situ hybridization assay evidence | gene_ex | 14
RNA protection assay evidence | gene_ex | 15
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 38
Western blot evidence | gene_ex | 125
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | misc | 1
Inferred from Physical Interaction | misc | 2
Traceable Author Statement | molecular_function | 132
Non-traceable Author Statement | molecular_function | 229
Inferred from Mutant Phenotype | molecular_function | 465
Inferred from Physical Interaction | molecular_function | 1210
Inferred from Direct Assay | molecular_function | 1142
Inferred from Experiment | molecular_function | 18
Inferred from Key Residues | molecular_function | 1
Inferred from Sequence Model | molecular_function | 348
Inferred from Electronic Annotation | molecular_function | 2969
inferred from Reviewed Computational Analysis | molecular_function | 239
Inferred by Curator | molecular_function | 63
Inferred from Sequence or Structural Similarity | molecular_function | 588
Inferred from Genetic Interaction | molecular_function | 145
Inferred from Sequence Orthology | molecular_function | 1479
No biological Data available | molecular_function | 3
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | PSI-MOD | 1
experimental evidence | PSI-MOD | 8143
Inferred from Sequence Model | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | PSI-MOD | 41
Inferred from Direct Assay | PSI-MOD | 1535
Inferred from Mutant Phenotype | sequence | 7
Inferred from Direct Assay | sequence | 2
Inferred from Sequence or Structural Similarity | sequence | 356
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 3
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 105
(105 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Key Residues | molecular_function | 1
Traceable Author Statement | fission_yeast_phenotype | 1
No biological Data available | cellular_component | 1
western blot evidence | fission_yeast_phenotype | 1
Inferred from Sequence Model | PSI-MOD | 1
Non-traceable Author Statement | complementation | 1
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | sequence | 2
Inferred from Physical Interaction | misc | 2
Traceable Author Statement | sequence | 2
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2
Inferred from Mutant Phenotype | fission_yeast_phenotype | 3
No biological Data available | molecular_function | 3
Inferred from Direct Assay | subunit_composition | 3
Inferred from Mutant Phenotype | misc | 4
No biological Data available | biological_process | 4
immunofluorescence evidence | gene_ex | 4
Traceable Author Statement | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Mutant Phenotype | sequence | 7
Particle size and count assay | fission_yeast_phenotype | 9
Other direct assay | fission_yeast_phenotype | 13
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
RNA protection assay evidence | gene_ex | 15
Inferred from Experiment | molecular_function | 18
quantitative PCR | gene_ex | 20
gel electrophoresis evidence | fission_yeast_phenotype | 22
Chromatography evidence | fission_yeast_phenotype | 23
Inferred from Experiment | cellular_component | 24
inferred from Reviewed Computational Analysis | biological_process | 25
reporter gene assay evidence | gene_ex | 32
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33
Plasmid maintenance assay evidence | fission_yeast_phenotype | 33
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 38
Inferred from Sequence or Structural Similarity | PSI-MOD | 41
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Experiment | biological_process | 48
Inferred from Sequence Model | cellular_component | 51
Inferred by Curator | molecular_function | 63
Inferred from Physical Interaction | cellular_component | 71
Inferred from Genetic Interaction | cellular_component | 74
Inferred from Mutant Phenotype | cellular_component | 78
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 78
Inferred from Physical Interaction | biological_process | 87
Inferred from Expression Pattern | biological_process | 96
Inferred from Sequence or Structural Similarity | warning | 105
Substance quantification | fission_yeast_phenotype | 108
Quantitative PCR | fission_yeast_phenotype | 109
Western blot evidence | gene_ex | 125
Cell Growth Assay | fission_yeast_phenotype | 132
Traceable Author Statement | molecular_function | 132
Inferred from Genetic Interaction | molecular_function | 145
Traceable Author Statement | cellular_component | 153
Co-immunoprecipitation experiment | fission_yeast_phenotype | 167
Northern assay evidence | fission_yeast_phenotype | 178
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Sequence Model | biological_process | 206
inferred from Reviewed Computational Analysis | cellular_component | 219
Reporter gene assay | fission_yeast_phenotype | 228
Non-traceable Author Statement | molecular_function | 229
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 232
inferred from Reviewed Computational Analysis | molecular_function | 239
competitive growth assay evidence | fission_yeast_phenotype | 239
Inferred by Curator | cellular_component | 252
Traceable Author Statement | biological_process | 303
Non-traceable Author Statement | cellular_component | 339
Inferred from Sequence Model | molecular_function | 348
Inferred from Sequence or Structural Similarity | sequence | 356
Flow cytometry data | fission_yeast_phenotype | 357
Substance quantification evidence | fission_yeast_phenotype | 407
Other | fission_yeast_phenotype | 436
Northern assay evidence | gene_ex | 451
Inferred from Mutant Phenotype | molecular_function | 465
Inferred from Sequence or Structural Similarity | molecular_function | 588
Inferred from Direct Assay | biological_process | 620
Inferred by Curator | biological_process | 629
Western blot assay | fission_yeast_phenotype | 630
Gel electrophoresis evidence | fission_yeast_phenotype | 719
Inferred from Sequence or Structural Similarity | cellular_component | 720
Enzyme assay data | fission_yeast_phenotype | 737
Inferred from Sequence or Structural Similarity | biological_process | 814
Inferred from Genetic Interaction | biological_process | 819
Transcript expression level evidence | fission_yeast_phenotype | 866
Non-traceable Author Statement | biological_process | 1099
Inferred from Direct Assay | molecular_function | 1142
Inferred from Physical Interaction | molecular_function | 1210
Inferred from Electronic Annotation | biological_process | 1314
Inferred from Electronic Annotation | cellular_component | 1347
expression microarray evidence | gene_ex | 1370
Inferred from Sequence Orthology | molecular_function | 1479
Inferred from Direct Assay | PSI-MOD | 1535
Inferred from Sequence Orthology | cellular_component | 2348
Inferred from Electronic Annotation | molecular_function | 2969
Inferred from Sequence Orthology | biological_process | 3060
Inferred from Mutant Phenotype | biological_process | 3808
experimental evidence | PSI-MOD | 8143
Cell growth assay | fission_yeast_phenotype | 9239
Inferred from Direct Assay | cellular_component | 9938
mass spectrometry evidence | gene_ex | 13682
Microscopy | fission_yeast_phenotype | 21004
experimental evidence | gene_ex | 24640
(105 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Cell growth assay | fission_yeast_phenotype | 9239
Cell Growth Assay | fission_yeast_phenotype | 132
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 232
Chromatography evidence | fission_yeast_phenotype | 23
Co-immunoprecipitation experiment | fission_yeast_phenotype | 167
competitive growth assay evidence | fission_yeast_phenotype | 239
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 78
Enzyme assay data | fission_yeast_phenotype | 737
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2
experimental evidence | PSI-MOD | 8143
experimental evidence | gene_ex | 24640
expression microarray evidence | gene_ex | 1370
Flow cytometry data | fission_yeast_phenotype | 357
gel electrophoresis evidence | fission_yeast_phenotype | 22
Gel electrophoresis evidence | fission_yeast_phenotype | 719
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 4
Inferred by Curator | molecular_function | 63
Inferred by Curator | biological_process | 629
Inferred by Curator | cellular_component | 252
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | PSI-MOD | 1535
Inferred from Direct Assay | cellular_component | 9938
Inferred from Direct Assay | biological_process | 620
Inferred from Direct Assay | molecular_function | 1142
Inferred from Direct Assay | subunit_composition | 3
Inferred from Electronic Annotation | cellular_component | 1347
Inferred from Electronic Annotation | molecular_function | 2969
Inferred from Electronic Annotation | biological_process | 1314
Inferred from Experiment | biological_process | 48
Inferred from Experiment | cellular_component | 24
Inferred from Experiment | molecular_function | 18
Inferred from Expression Pattern | biological_process | 96
Inferred from Genetic Interaction | cellular_component | 74
Inferred from Genetic Interaction | biological_process | 819
Inferred from Genetic Interaction | molecular_function | 145
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 465
Inferred from Mutant Phenotype | cellular_component | 78
Inferred from Mutant Phenotype | fission_yeast_phenotype | 3
Inferred from Mutant Phenotype | biological_process | 3808
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | sequence | 7
Inferred from Physical Interaction | biological_process | 87
Inferred from Physical Interaction | molecular_function | 1210
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | cellular_component | 71
inferred from Reviewed Computational Analysis | cellular_component | 219
inferred from Reviewed Computational Analysis | molecular_function | 239
inferred from Reviewed Computational Analysis | biological_process | 25
Inferred from Sequence Model | molecular_function | 348
Inferred from Sequence Model | cellular_component | 51
Inferred from Sequence Model | biological_process | 206
Inferred from Sequence Model | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | sequence | 356
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 105
Inferred from Sequence or Structural Similarity | PSI-MOD | 41
Inferred from Sequence or Structural Similarity | cellular_component | 720
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | molecular_function | 588
Inferred from Sequence or Structural Similarity | biological_process | 814
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Sequence Orthology | biological_process | 3060
Inferred from Sequence Orthology | cellular_component | 2348
Inferred from Sequence Orthology | molecular_function | 1479
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
Microscopy | fission_yeast_phenotype | 21004
No biological Data available | molecular_function | 3
No biological Data available | cellular_component | 1
No biological Data available | biological_process | 4
Non-traceable Author Statement | cellular_component | 339
Non-traceable Author Statement | biological_process | 1099
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 229
Northern assay evidence | fission_yeast_phenotype | 178
Northern assay evidence | gene_ex | 451
Other | fission_yeast_phenotype | 436
Other direct assay | fission_yeast_phenotype | 13
Particle size and count assay | fission_yeast_phenotype | 9
Plasmid maintenance assay evidence | fission_yeast_phenotype | 33
quantitative PCR | gene_ex | 20
Quantitative PCR | fission_yeast_phenotype | 109
Reporter gene assay | fission_yeast_phenotype | 228
reporter gene assay evidence | gene_ex | 32
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 38
RNA protection assay evidence | gene_ex | 15
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33
Substance quantification | fission_yeast_phenotype | 108
Substance quantification evidence | fission_yeast_phenotype | 407
Traceable Author Statement | biological_process | 303
Traceable Author Statement | molecular_function | 132
Traceable Author Statement | fission_yeast_phenotype | 1
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | cellular_component | 153
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | sequence | 2
Transcript expression level evidence | fission_yeast_phenotype | 866
Western blot assay | fission_yeast_phenotype | 630
western blot evidence | fission_yeast_phenotype | 1
Western blot evidence | gene_ex | 125
(105 rows)
total:
count
--------
169898
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
329 | PSI-MOD
566 | molecular_function
832 | cellular_component
1308 | biological_process
5260 | PomBase annotation extension terms
9851 | fission_yeast_phenotype
(6 rows)
total
-------
18146
(1 row)