counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 21 | ex_tools 24 | cat_act 32 | pathway 89 | m_f_g 135 | subunit_composition 230 | genome_org 265 | complementation 294 | misc 554 | disease_associated 805 | name_description 837 | EC numbers 944 | sequence 1617 | warning 1871 | PomBase family or domain 5145 | PomBase gene characterisation status 7022 | PomBase gene products 8991 | molecular_function 11282 | PSI-MOD 12391 | biological_process 15673 | cellular_component 24534 | species_dist 38200 | fission_yeast_phenotype 38723 | gene_ex (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence Model | biological_process | 203 Inferred from Sequence or Structural Similarity | biological_process | 795 Inferred from Sequence Orthology | biological_process | 3026 No biological Data available | biological_process | 4 Inferred by Curator | biological_process | 630 Inferred from Direct Assay | biological_process | 648 Inferred from Genetic Interaction | biological_process | 773 Inferred from Electronic Annotation | biological_process | 1245 Non-traceable Author Statement | biological_process | 813 Traceable Author Statement | biological_process | 276 Inferred from Mutant Phenotype | biological_process | 3726 inferred from Reviewed Computational Analysis | biological_process | 24 Inferred from Physical Interaction | biological_process | 83 Inferred from Experiment | biological_process | 51 Inferred from Expression Pattern | biological_process | 94 Inferred from Physical Interaction | cellular_component | 73 Inferred from Electronic Annotation | cellular_component | 1299 Inferred from Sequence Orthology | cellular_component | 2361 Inferred from Sequence or Structural Similarity | cellular_component | 723 Inferred from Experiment | cellular_component | 28 Traceable Author Statement | cellular_component | 153 Inferred from Direct Assay | cellular_component | 10032 Inferred by Curator | cellular_component | 251 Inferred from Genetic Interaction | cellular_component | 69 Non-traceable Author Statement | cellular_component | 337 No biological Data available | cellular_component | 1 inferred from Reviewed Computational Analysis | cellular_component | 219 Inferred from Sequence Model | cellular_component | 50 Inferred from Mutant Phenotype | cellular_component | 77 Non-traceable Author Statement | complementation | 1 Gel electrophoresis evidence | fission_yeast_phenotype | 756 Other direct assay | fission_yeast_phenotype | 13 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Traceable Author Statement | fission_yeast_phenotype | 1 Western blot assay | fission_yeast_phenotype | 664 Transcript expression level evidence | fission_yeast_phenotype | 954 competitive growth assay evidence | fission_yeast_phenotype | 239 Chromatography evidence | fission_yeast_phenotype | 23 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 22 Reporter gene assay | fission_yeast_phenotype | 241 Plasmid maintenance assay evidence | fission_yeast_phenotype | 35 Flow cytometry data | fission_yeast_phenotype | 408 Enzyme assay data | fission_yeast_phenotype | 773 Quantitative PCR | fission_yeast_phenotype | 114 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 253 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Microscopy | fission_yeast_phenotype | 21440 Northern assay evidence | fission_yeast_phenotype | 178 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 79 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Substance quantification | fission_yeast_phenotype | 108 experimental phenotypic evidence | fission_yeast_phenotype | 493 Cell growth assay | fission_yeast_phenotype | 9773 Other | fission_yeast_phenotype | 479 Substance quantification evidence | fission_yeast_phenotype | 418 Co-immunoprecipitation experiment | fission_yeast_phenotype | 189 western blot evidence | fission_yeast_phenotype | 1 quantitative PCR | gene_ex | 20 Northern assay evidence | gene_ex | 491 fusion protein localization evidence | gene_ex | 3 reporter gene assay evidence | gene_ex | 34 expression microarray evidence | gene_ex | 1370 mass spectrometry evidence | gene_ex | 13682 immunofluorescence evidence | gene_ex | 4 experimental evidence | gene_ex | 22873 in situ hybridization assay evidence | gene_ex | 14 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 40 Western blot evidence | gene_ex | 158 RNA protection assay evidence | gene_ex | 15 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | misc | 1 Inferred from Genetic Interaction | molecular_function | 140 Non-traceable Author Statement | molecular_function | 226 Inferred from Mutant Phenotype | molecular_function | 470 Inferred from Physical Interaction | molecular_function | 1236 Inferred from Experiment | molecular_function | 19 Inferred from Key Residues | molecular_function | 1 Inferred from Direct Assay | molecular_function | 1209 Inferred from Sequence Model | molecular_function | 360 Inferred from Electronic Annotation | molecular_function | 2839 inferred from Reviewed Computational Analysis | molecular_function | 239 Inferred by Curator | molecular_function | 57 Inferred from Sequence or Structural Similarity | molecular_function | 585 No biological Data available | molecular_function | 3 Inferred from Sequence Orthology | molecular_function | 1485 Traceable Author Statement | molecular_function | 122 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Direct Assay | PSI-MOD | 1552 experimental evidence | PSI-MOD | 8143 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | sequence | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Mutant Phenotype | sequence | 7 Traceable Author Statement | sequence | 2 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | warning | 105 (107 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- western blot evidence | fission_yeast_phenotype | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence or Structural Similarity | misc | 1 No biological Data available | cellular_component | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence Model | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | fission_yeast_phenotype | 1 Inferred from Direct Assay | sequence | 2 Inferred from Physical Interaction | misc | 2 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Traceable Author Statement | sequence | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 fusion protein localization evidence | gene_ex | 3 No biological Data available | molecular_function | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Mutant Phenotype | misc | 4 No biological Data available | biological_process | 4 immunofluorescence evidence | gene_ex | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Mutant Phenotype | sequence | 7 Particle size and count assay | fission_yeast_phenotype | 9 Inferred from Sequence or Structural Similarity | genome_org | 13 Other direct assay | fission_yeast_phenotype | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Inferred from Experiment | molecular_function | 19 quantitative PCR | gene_ex | 20 gel electrophoresis evidence | fission_yeast_phenotype | 22 Chromatography evidence | fission_yeast_phenotype | 23 inferred from Reviewed Computational Analysis | biological_process | 24 Inferred from Experiment | cellular_component | 28 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 reporter gene assay evidence | gene_ex | 34 Plasmid maintenance assay evidence | fission_yeast_phenotype | 35 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 40 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence Model | cellular_component | 50 Inferred from Experiment | biological_process | 51 Inferred by Curator | molecular_function | 57 Inferred from Genetic Interaction | cellular_component | 69 Inferred from Physical Interaction | cellular_component | 73 Inferred from Mutant Phenotype | cellular_component | 77 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 79 Inferred from Physical Interaction | biological_process | 83 Inferred from Expression Pattern | biological_process | 94 Inferred from Sequence or Structural Similarity | warning | 105 Substance quantification | fission_yeast_phenotype | 108 Quantitative PCR | fission_yeast_phenotype | 114 Traceable Author Statement | molecular_function | 122 Cell Growth Assay | fission_yeast_phenotype | 132 Inferred from Genetic Interaction | molecular_function | 140 Traceable Author Statement | cellular_component | 153 Western blot evidence | gene_ex | 158 Northern assay evidence | fission_yeast_phenotype | 178 Co-immunoprecipitation experiment | fission_yeast_phenotype | 189 Inferred from Sequence Model | biological_process | 203 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 inferred from Reviewed Computational Analysis | cellular_component | 219 Non-traceable Author Statement | molecular_function | 226 inferred from Reviewed Computational Analysis | molecular_function | 239 competitive growth assay evidence | fission_yeast_phenotype | 239 Reporter gene assay | fission_yeast_phenotype | 241 Inferred by Curator | cellular_component | 251 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 253 Traceable Author Statement | biological_process | 276 Non-traceable Author Statement | cellular_component | 337 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence Model | molecular_function | 360 Flow cytometry data | fission_yeast_phenotype | 408 Substance quantification evidence | fission_yeast_phenotype | 418 Inferred from Mutant Phenotype | molecular_function | 470 Other | fission_yeast_phenotype | 479 Northern assay evidence | gene_ex | 491 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Sequence or Structural Similarity | molecular_function | 585 Inferred by Curator | biological_process | 630 Inferred from Direct Assay | biological_process | 648 Western blot assay | fission_yeast_phenotype | 664 Inferred from Sequence or Structural Similarity | cellular_component | 723 Gel electrophoresis evidence | fission_yeast_phenotype | 756 Enzyme assay data | fission_yeast_phenotype | 773 Inferred from Genetic Interaction | biological_process | 773 Inferred from Sequence or Structural Similarity | biological_process | 795 Non-traceable Author Statement | biological_process | 813 Transcript expression level evidence | fission_yeast_phenotype | 954 Inferred from Direct Assay | molecular_function | 1209 Inferred from Physical Interaction | molecular_function | 1236 Inferred from Electronic Annotation | biological_process | 1245 Inferred from Electronic Annotation | cellular_component | 1299 expression microarray evidence | gene_ex | 1370 Inferred from Sequence Orthology | molecular_function | 1485 Inferred from Direct Assay | PSI-MOD | 1552 Inferred from Sequence Orthology | cellular_component | 2361 Inferred from Electronic Annotation | molecular_function | 2839 Inferred from Sequence Orthology | biological_process | 3026 Inferred from Mutant Phenotype | biological_process | 3726 experimental evidence | PSI-MOD | 8143 Cell growth assay | fission_yeast_phenotype | 9773 Inferred from Direct Assay | cellular_component | 10032 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 21440 experimental evidence | gene_ex | 22873 (107 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 9773 Cell Growth Assay | fission_yeast_phenotype | 132 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 253 Chromatography evidence | fission_yeast_phenotype | 23 Co-immunoprecipitation experiment | fission_yeast_phenotype | 189 competitive growth assay evidence | fission_yeast_phenotype | 239 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 79 Enzyme assay data | fission_yeast_phenotype | 773 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 experimental evidence | gene_ex | 22873 experimental evidence | PSI-MOD | 8143 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1370 Flow cytometry data | fission_yeast_phenotype | 408 fusion protein localization evidence | gene_ex | 3 gel electrophoresis evidence | fission_yeast_phenotype | 22 Gel electrophoresis evidence | fission_yeast_phenotype | 756 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 4 Inferred by Curator | cellular_component | 251 Inferred by Curator | molecular_function | 57 Inferred by Curator | biological_process | 630 Inferred from Direct Assay | biological_process | 648 Inferred from Direct Assay | cellular_component | 10032 Inferred from Direct Assay | molecular_function | 1209 Inferred from Direct Assay | PSI-MOD | 1552 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | molecular_function | 2839 Inferred from Electronic Annotation | biological_process | 1245 Inferred from Electronic Annotation | cellular_component | 1299 Inferred from Experiment | biological_process | 51 Inferred from Experiment | molecular_function | 19 Inferred from Experiment | cellular_component | 28 Inferred from Expression Pattern | biological_process | 94 Inferred from Genetic Interaction | biological_process | 773 Inferred from Genetic Interaction | cellular_component | 69 Inferred from Genetic Interaction | molecular_function | 140 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 470 Inferred from Mutant Phenotype | biological_process | 3726 Inferred from Mutant Phenotype | cellular_component | 77 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | biological_process | 83 Inferred from Physical Interaction | cellular_component | 73 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 1236 inferred from Reviewed Computational Analysis | molecular_function | 239 inferred from Reviewed Computational Analysis | cellular_component | 219 inferred from Reviewed Computational Analysis | biological_process | 24 Inferred from Sequence Model | biological_process | 203 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence Model | molecular_function | 360 Inferred from Sequence Model | cellular_component | 50 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | biological_process | 795 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | cellular_component | 723 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | molecular_function | 585 Inferred from Sequence Orthology | molecular_function | 1485 Inferred from Sequence Orthology | biological_process | 3026 Inferred from Sequence Orthology | cellular_component | 2361 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 21440 No biological Data available | biological_process | 4 No biological Data available | molecular_function | 3 No biological Data available | cellular_component | 1 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | biological_process | 813 Non-traceable Author Statement | cellular_component | 337 Non-traceable Author Statement | molecular_function | 226 Northern assay evidence | fission_yeast_phenotype | 178 Northern assay evidence | gene_ex | 491 Other | fission_yeast_phenotype | 479 Other direct assay | fission_yeast_phenotype | 13 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 35 quantitative PCR | gene_ex | 20 Quantitative PCR | fission_yeast_phenotype | 114 Reporter gene assay | fission_yeast_phenotype | 241 reporter gene assay evidence | gene_ex | 34 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 40 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 108 Substance quantification evidence | fission_yeast_phenotype | 418 Traceable Author Statement | biological_process | 276 Traceable Author Statement | fission_yeast_phenotype | 1 Traceable Author Statement | cellular_component | 153 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 Traceable Author Statement | molecular_function | 122 Transcript expression level evidence | fission_yeast_phenotype | 954 Western blot assay | fission_yeast_phenotype | 664 western blot evidence | fission_yeast_phenotype | 1 Western blot evidence | gene_ex | 158 (107 rows) total: count -------- 169681 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 331 | PSI-MOD 649 | molecular_function 908 | cellular_component 1409 | biological_process 5758 | PomBase annotation extension terms 10719 | fission_yeast_phenotype (6 rows) total ------- 19774 (1 row)