counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 21 | ex_tools 27 | cat_act 32 | pathway 89 | m_f_g 138 | subunit_composition 230 | genome_org 274 | complementation 297 | misc 554 | disease_associated 821 | name_description 837 | EC numbers 945 | sequence 1610 | warning 1873 | PomBase family or domain 5145 | PomBase gene characterisation status 7018 | PomBase gene products 9042 | molecular_function 11313 | PSI-MOD 12192 | biological_process 15772 | cellular_component 24550 | species_dist 36511 | gene_ex 41171 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Traceable Author Statement | biological_process | 260 inferred from Reviewed Computational Analysis | biological_process | 24 Non-traceable Author Statement | biological_process | 756 Inferred from Mutant Phenotype | biological_process | 3797 Inferred from Genetic Interaction | biological_process | 743 Inferred from Sequence or Structural Similarity | biological_process | 761 Inferred from Physical Interaction | biological_process | 81 Inferred from Experiment | biological_process | 51 Inferred from Direct Assay | biological_process | 653 Inferred from Sequence Model | biological_process | 195 Inferred by Curator | biological_process | 626 Inferred from Sequence Orthology | biological_process | 3011 Inferred from Expression Pattern | biological_process | 93 Inferred from Electronic Annotation | biological_process | 1141 Non-traceable Author Statement | cellular_component | 303 Inferred from Physical Interaction | cellular_component | 80 Inferred from Mutant Phenotype | cellular_component | 76 inferred from Reviewed Computational Analysis | cellular_component | 241 Inferred from Sequence Orthology | cellular_component | 2370 Inferred from Sequence or Structural Similarity | cellular_component | 714 Inferred from Genetic Interaction | cellular_component | 67 Traceable Author Statement | cellular_component | 140 Inferred from Sequence Model | cellular_component | 51 Inferred by Curator | cellular_component | 251 Inferred from Direct Assay | cellular_component | 10222 Inferred from Electronic Annotation | cellular_component | 1229 Inferred from Experiment | cellular_component | 28 Non-traceable Author Statement | complementation | 1 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 89 Western blot evidence | fission_yeast_phenotype | 1 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Immunolocalization experiment data | fission_yeast_phenotype | 7 Northern assay evidence | fission_yeast_phenotype | 189 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 809 Other direct assay | fission_yeast_phenotype | 11 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 289 Flow cytometry data | fission_yeast_phenotype | 467 Plasmid maintenance assay evidence | fission_yeast_phenotype | 40 Enzyme assay data | fission_yeast_phenotype | 879 Western blot assay | fission_yeast_phenotype | 895 Reporter gene assay | fission_yeast_phenotype | 538 Co-immunoprecipitation experiment | fission_yeast_phenotype | 207 Substance quantification evidence | fission_yeast_phenotype | 495 Other | fission_yeast_phenotype | 517 Cell growth assay | fission_yeast_phenotype | 11059 quantitative PCR | fission_yeast_phenotype | 149 experimental phenotypic evidence | fission_yeast_phenotype | 493 Transcript expression level evidence | fission_yeast_phenotype | 1246 Microscopy | fission_yeast_phenotype | 21914 competitive growth assay evidence | fission_yeast_phenotype | 243 Traceable Author Statement | fission_yeast_phenotype | 1 Chromatography evidence | fission_yeast_phenotype | 26 Substance quantification | fission_yeast_phenotype | 144 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 expression microarray evidence | gene_ex | 1373 immunofluorescence evidence | gene_ex | 6 quantitative PCR | gene_ex | 36 Northern assay evidence | gene_ex | 581 RNA protection assay evidence | gene_ex | 15 in situ hybridization assay evidence | gene_ex | 14 fusion protein localization evidence | gene_ex | 3 mass spectrometry evidence | gene_ex | 13682 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 experimental evidence | gene_ex | 20413 Western blot evidence | gene_ex | 177 reporter gene assay evidence | gene_ex | 141 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | misc | 2 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Electronic Annotation | molecular_function | 2794 Inferred by Curator | molecular_function | 56 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence Model | molecular_function | 342 Inferred from Mutant Phenotype | molecular_function | 510 Inferred from Direct Assay | molecular_function | 1246 Non-traceable Author Statement | molecular_function | 218 inferred from Reviewed Computational Analysis | molecular_function | 239 Inferred from Sequence or Structural Similarity | molecular_function | 575 Inferred from Sequence Orthology | molecular_function | 1489 Inferred from Genetic Interaction | molecular_function | 139 Traceable Author Statement | molecular_function | 120 Inferred from Physical Interaction | molecular_function | 1294 Inferred from Experiment | molecular_function | 19 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | PSI-MOD | 2501 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence Model | PSI-MOD | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Mutant Phenotype | sequence | 7 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | warning | 105 (103 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Traceable Author Statement | fission_yeast_phenotype | 1 Western blot evidence | fission_yeast_phenotype | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Inferred from Direct Assay | subunit_composition | 3 fusion protein localization evidence | gene_ex | 3 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 7 Inferred from Mutant Phenotype | sequence | 7 Particle size and count assay | fission_yeast_phenotype | 9 Other direct assay | fission_yeast_phenotype | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Inferred from Experiment | molecular_function | 19 inferred from Reviewed Computational Analysis | biological_process | 24 Chromatography evidence | fission_yeast_phenotype | 26 Inferred from Experiment | cellular_component | 28 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 quantitative PCR | gene_ex | 36 Plasmid maintenance assay evidence | fission_yeast_phenotype | 40 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Experiment | biological_process | 51 Inferred from Sequence Model | cellular_component | 51 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Inferred by Curator | molecular_function | 56 Inferred from Genetic Interaction | cellular_component | 67 Inferred from Mutant Phenotype | cellular_component | 76 Inferred from Physical Interaction | cellular_component | 80 Inferred from Physical Interaction | biological_process | 81 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 89 Inferred from Expression Pattern | biological_process | 93 Inferred from Sequence or Structural Similarity | warning | 105 Traceable Author Statement | molecular_function | 120 Inferred from Genetic Interaction | molecular_function | 139 Traceable Author Statement | cellular_component | 140 reporter gene assay evidence | gene_ex | 141 Substance quantification | fission_yeast_phenotype | 144 quantitative PCR | fission_yeast_phenotype | 149 Western blot evidence | gene_ex | 177 Northern assay evidence | fission_yeast_phenotype | 189 Inferred from Sequence Model | biological_process | 195 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Co-immunoprecipitation experiment | fission_yeast_phenotype | 207 Non-traceable Author Statement | molecular_function | 218 inferred from Reviewed Computational Analysis | molecular_function | 239 inferred from Reviewed Computational Analysis | cellular_component | 241 competitive growth assay evidence | fission_yeast_phenotype | 243 Inferred by Curator | cellular_component | 251 Traceable Author Statement | biological_process | 260 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 289 Non-traceable Author Statement | cellular_component | 303 Inferred from Sequence Model | molecular_function | 342 Inferred from Sequence or Structural Similarity | sequence | 356 Flow cytometry data | fission_yeast_phenotype | 467 experimental phenotypic evidence | fission_yeast_phenotype | 493 Substance quantification evidence | fission_yeast_phenotype | 495 Inferred from Mutant Phenotype | molecular_function | 510 Other | fission_yeast_phenotype | 517 Reporter gene assay | fission_yeast_phenotype | 538 Inferred from Sequence or Structural Similarity | molecular_function | 575 Northern assay evidence | gene_ex | 581 Inferred by Curator | biological_process | 626 Inferred from Direct Assay | biological_process | 653 Inferred from Sequence or Structural Similarity | cellular_component | 714 Inferred from Genetic Interaction | biological_process | 743 Non-traceable Author Statement | biological_process | 756 Inferred from Sequence or Structural Similarity | biological_process | 761 gel electrophoresis evidence | fission_yeast_phenotype | 809 Enzyme assay data | fission_yeast_phenotype | 879 Western blot assay | fission_yeast_phenotype | 895 Inferred from Electronic Annotation | biological_process | 1141 Inferred from Electronic Annotation | cellular_component | 1229 Transcript expression level evidence | fission_yeast_phenotype | 1246 Inferred from Direct Assay | molecular_function | 1246 Inferred from Physical Interaction | molecular_function | 1294 expression microarray evidence | gene_ex | 1373 Inferred from Sequence Orthology | molecular_function | 1489 Inferred from Sequence Orthology | cellular_component | 2370 Inferred from Direct Assay | PSI-MOD | 2501 Inferred from Electronic Annotation | molecular_function | 2794 Inferred from Sequence Orthology | biological_process | 3011 Inferred from Mutant Phenotype | biological_process | 3797 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | cellular_component | 10222 Cell growth assay | fission_yeast_phenotype | 11059 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20413 Microscopy | fission_yeast_phenotype | 21914 (103 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 11059 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 289 Chromatography evidence | fission_yeast_phenotype | 26 Co-immunoprecipitation experiment | fission_yeast_phenotype | 207 competitive growth assay evidence | fission_yeast_phenotype | 243 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 89 Enzyme assay data | fission_yeast_phenotype | 879 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 experimental evidence | gene_ex | 20413 experimental evidence | PSI-MOD | 8143 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1373 Flow cytometry data | fission_yeast_phenotype | 467 fusion protein localization evidence | gene_ex | 3 gel electrophoresis evidence | fission_yeast_phenotype | 809 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 7 Inferred by Curator | molecular_function | 56 Inferred by Curator | cellular_component | 251 Inferred by Curator | biological_process | 626 Inferred from Direct Assay | biological_process | 653 Inferred from Direct Assay | PSI-MOD | 2501 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | molecular_function | 1246 Inferred from Direct Assay | cellular_component | 10222 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | misc | 1 Inferred from Electronic Annotation | biological_process | 1141 Inferred from Electronic Annotation | cellular_component | 1229 Inferred from Electronic Annotation | molecular_function | 2794 Inferred from Experiment | molecular_function | 19 Inferred from Experiment | cellular_component | 28 Inferred from Experiment | biological_process | 51 Inferred from Expression Pattern | biological_process | 93 Inferred from Genetic Interaction | cellular_component | 67 Inferred from Genetic Interaction | biological_process | 743 Inferred from Genetic Interaction | molecular_function | 139 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | molecular_function | 510 Inferred from Mutant Phenotype | biological_process | 3797 Inferred from Mutant Phenotype | cellular_component | 76 Inferred from Physical Interaction | biological_process | 81 Inferred from Physical Interaction | cellular_component | 80 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 1294 inferred from Reviewed Computational Analysis | molecular_function | 239 inferred from Reviewed Computational Analysis | cellular_component | 241 inferred from Reviewed Computational Analysis | biological_process | 24 Inferred from Sequence Model | cellular_component | 51 Inferred from Sequence Model | molecular_function | 342 Inferred from Sequence Model | biological_process | 195 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence or Structural Similarity | cellular_component | 714 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | molecular_function | 575 Inferred from Sequence or Structural Similarity | biological_process | 761 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence Orthology | molecular_function | 1489 Inferred from Sequence Orthology | cellular_component | 2370 Inferred from Sequence Orthology | biological_process | 3011 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 21914 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | biological_process | 756 Non-traceable Author Statement | cellular_component | 303 Non-traceable Author Statement | molecular_function | 218 Northern assay evidence | gene_ex | 581 Northern assay evidence | fission_yeast_phenotype | 189 Other | fission_yeast_phenotype | 517 Other direct assay | fission_yeast_phenotype | 11 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 40 quantitative PCR | gene_ex | 36 quantitative PCR | fission_yeast_phenotype | 149 Reporter gene assay | fission_yeast_phenotype | 538 reporter gene assay evidence | gene_ex | 141 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 144 Substance quantification evidence | fission_yeast_phenotype | 495 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | fission_yeast_phenotype | 1 Traceable Author Statement | molecular_function | 120 Traceable Author Statement | sequence | 2 Traceable Author Statement | biological_process | 260 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | cellular_component | 140 Transcript expression level evidence | fission_yeast_phenotype | 1246 Western blot assay | fission_yeast_phenotype | 895 Western blot evidence | fission_yeast_phenotype | 1 Western blot evidence | gene_ex | 177 (103 rows) total: count -------- 170464 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 337 | PSI-MOD 770 | molecular_function 1075 | cellular_component 1622 | biological_process 6751 | PomBase annotation extension terms 12320 | fission_yeast_phenotype (6 rows) total ------- 22875 (1 row)