counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 21 | ex_tools 27 | cat_act 32 | pathway 89 | m_f_g 138 | subunit_composition 230 | genome_org 279 | complementation 297 | misc 555 | disease_associated 825 | name_description 837 | EC numbers 945 | sequence 1608 | warning 1872 | PomBase family or domain 5145 | PomBase gene characterisation status 7017 | PomBase gene products 9033 | molecular_function 11322 | PSI-MOD 12072 | biological_process 15846 | cellular_component 24550 | species_dist 36530 | gene_ex 42674 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Traceable Author Statement | biological_process | 258 inferred from Reviewed Computational Analysis | biological_process | 24 Non-traceable Author Statement | biological_process | 783 Inferred from Mutant Phenotype | biological_process | 3747 Inferred from Genetic Interaction | biological_process | 727 Inferred from Sequence or Structural Similarity | biological_process | 755 Inferred from Physical Interaction | biological_process | 84 Inferred from Experiment | biological_process | 51 Inferred from Direct Assay | biological_process | 644 Inferred from Sequence Model | biological_process | 196 Inferred by Curator | biological_process | 607 Inferred from Sequence Orthology | biological_process | 2993 Inferred from Expression Pattern | biological_process | 91 Inferred from Electronic Annotation | biological_process | 1112 Non-traceable Author Statement | cellular_component | 304 Inferred from Physical Interaction | cellular_component | 98 Inferred from Mutant Phenotype | cellular_component | 83 inferred from Reviewed Computational Analysis | cellular_component | 241 Inferred from Sequence Orthology | cellular_component | 2374 Inferred from Sequence or Structural Similarity | cellular_component | 716 Inferred from Genetic Interaction | cellular_component | 69 Traceable Author Statement | cellular_component | 141 Inferred from Sequence Model | cellular_component | 50 Inferred by Curator | cellular_component | 254 Inferred from Direct Assay | cellular_component | 10261 Inferred from Electronic Annotation | cellular_component | 1227 Inferred from Experiment | cellular_component | 28 Non-traceable Author Statement | complementation | 1 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 90 Western blot evidence | fission_yeast_phenotype | 1 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Immunolocalization experiment data | fission_yeast_phenotype | 7 Northern assay evidence | fission_yeast_phenotype | 188 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 825 Other direct assay | fission_yeast_phenotype | 11 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 295 Flow cytometry data | fission_yeast_phenotype | 478 Plasmid maintenance assay evidence | fission_yeast_phenotype | 42 Enzyme assay data | fission_yeast_phenotype | 952 Western blot assay | fission_yeast_phenotype | 932 Reporter gene assay | fission_yeast_phenotype | 543 Co-immunoprecipitation experiment | fission_yeast_phenotype | 222 Substance quantification evidence | fission_yeast_phenotype | 509 Other | fission_yeast_phenotype | 534 Cell growth assay | fission_yeast_phenotype | 12110 quantitative PCR | fission_yeast_phenotype | 149 experimental phenotypic evidence | fission_yeast_phenotype | 493 Transcript expression level evidence | fission_yeast_phenotype | 1269 Microscopy | fission_yeast_phenotype | 22151 competitive growth assay evidence | fission_yeast_phenotype | 243 Traceable Author Statement | fission_yeast_phenotype | 1 Chromatography evidence | fission_yeast_phenotype | 26 Substance quantification | fission_yeast_phenotype | 144 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 expression microarray evidence | gene_ex | 1373 immunofluorescence evidence | gene_ex | 6 quantitative PCR | gene_ex | 36 Northern assay evidence | gene_ex | 590 RNA protection assay evidence | gene_ex | 15 in situ hybridization assay evidence | gene_ex | 14 fusion protein localization evidence | gene_ex | 3 mass spectrometry evidence | gene_ex | 13682 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 experimental evidence | gene_ex | 20411 Western blot evidence | gene_ex | 187 reporter gene assay evidence | gene_ex | 143 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | misc | 2 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Electronic Annotation | molecular_function | 2783 Inferred by Curator | molecular_function | 56 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence Model | molecular_function | 340 Inferred from Mutant Phenotype | molecular_function | 511 Inferred from Direct Assay | molecular_function | 1254 Non-traceable Author Statement | molecular_function | 205 inferred from Reviewed Computational Analysis | molecular_function | 239 Inferred from Sequence or Structural Similarity | molecular_function | 574 Inferred from Sequence Orthology | molecular_function | 1485 Inferred from Genetic Interaction | molecular_function | 135 Traceable Author Statement | molecular_function | 120 Inferred from Physical Interaction | molecular_function | 1311 Inferred from Experiment | molecular_function | 19 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | PSI-MOD | 2510 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence Model | PSI-MOD | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Mutant Phenotype | sequence | 7 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | warning | 105 (103 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Traceable Author Statement | fission_yeast_phenotype | 1 Western blot evidence | fission_yeast_phenotype | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Inferred from Direct Assay | subunit_composition | 3 fusion protein localization evidence | gene_ex | 3 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 7 Inferred from Mutant Phenotype | sequence | 7 Particle size and count assay | fission_yeast_phenotype | 9 Other direct assay | fission_yeast_phenotype | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Inferred from Experiment | molecular_function | 19 inferred from Reviewed Computational Analysis | biological_process | 24 Chromatography evidence | fission_yeast_phenotype | 26 Inferred from Experiment | cellular_component | 28 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 quantitative PCR | gene_ex | 36 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Plasmid maintenance assay evidence | fission_yeast_phenotype | 42 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence Model | cellular_component | 50 Inferred from Experiment | biological_process | 51 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Inferred by Curator | molecular_function | 56 Inferred from Genetic Interaction | cellular_component | 69 Inferred from Mutant Phenotype | cellular_component | 83 Inferred from Physical Interaction | biological_process | 84 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 90 Inferred from Expression Pattern | biological_process | 91 Inferred from Physical Interaction | cellular_component | 98 Inferred from Sequence or Structural Similarity | warning | 105 Traceable Author Statement | molecular_function | 120 Inferred from Genetic Interaction | molecular_function | 135 Traceable Author Statement | cellular_component | 141 reporter gene assay evidence | gene_ex | 143 Substance quantification | fission_yeast_phenotype | 144 quantitative PCR | fission_yeast_phenotype | 149 Western blot evidence | gene_ex | 187 Northern assay evidence | fission_yeast_phenotype | 188 Inferred from Sequence Model | biological_process | 196 Non-traceable Author Statement | molecular_function | 205 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Co-immunoprecipitation experiment | fission_yeast_phenotype | 222 inferred from Reviewed Computational Analysis | molecular_function | 239 inferred from Reviewed Computational Analysis | cellular_component | 241 competitive growth assay evidence | fission_yeast_phenotype | 243 Inferred by Curator | cellular_component | 254 Traceable Author Statement | biological_process | 258 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 295 Non-traceable Author Statement | cellular_component | 304 Inferred from Sequence Model | molecular_function | 340 Inferred from Sequence or Structural Similarity | sequence | 356 Flow cytometry data | fission_yeast_phenotype | 478 experimental phenotypic evidence | fission_yeast_phenotype | 493 Substance quantification evidence | fission_yeast_phenotype | 509 Inferred from Mutant Phenotype | molecular_function | 511 Other | fission_yeast_phenotype | 534 Reporter gene assay | fission_yeast_phenotype | 543 Inferred from Sequence or Structural Similarity | molecular_function | 574 Northern assay evidence | gene_ex | 590 Inferred by Curator | biological_process | 607 Inferred from Direct Assay | biological_process | 644 Inferred from Sequence or Structural Similarity | cellular_component | 716 Inferred from Genetic Interaction | biological_process | 727 Inferred from Sequence or Structural Similarity | biological_process | 755 Non-traceable Author Statement | biological_process | 783 gel electrophoresis evidence | fission_yeast_phenotype | 825 Western blot assay | fission_yeast_phenotype | 932 Enzyme assay data | fission_yeast_phenotype | 952 Inferred from Electronic Annotation | biological_process | 1112 Inferred from Electronic Annotation | cellular_component | 1227 Inferred from Direct Assay | molecular_function | 1254 Transcript expression level evidence | fission_yeast_phenotype | 1269 Inferred from Physical Interaction | molecular_function | 1311 expression microarray evidence | gene_ex | 1373 Inferred from Sequence Orthology | molecular_function | 1485 Inferred from Sequence Orthology | cellular_component | 2374 Inferred from Direct Assay | PSI-MOD | 2510 Inferred from Electronic Annotation | molecular_function | 2783 Inferred from Sequence Orthology | biological_process | 2993 Inferred from Mutant Phenotype | biological_process | 3747 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | cellular_component | 10261 Cell growth assay | fission_yeast_phenotype | 12110 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20411 Microscopy | fission_yeast_phenotype | 22151 (103 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 12110 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 295 Chromatography evidence | fission_yeast_phenotype | 26 Co-immunoprecipitation experiment | fission_yeast_phenotype | 222 competitive growth assay evidence | fission_yeast_phenotype | 243 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 90 Enzyme assay data | fission_yeast_phenotype | 952 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 experimental evidence | gene_ex | 20411 experimental evidence | PSI-MOD | 8143 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1373 Flow cytometry data | fission_yeast_phenotype | 478 fusion protein localization evidence | gene_ex | 3 gel electrophoresis evidence | fission_yeast_phenotype | 825 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 7 Inferred by Curator | molecular_function | 56 Inferred by Curator | cellular_component | 254 Inferred by Curator | biological_process | 607 Inferred from Direct Assay | biological_process | 644 Inferred from Direct Assay | PSI-MOD | 2510 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | molecular_function | 1254 Inferred from Direct Assay | cellular_component | 10261 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | misc | 1 Inferred from Electronic Annotation | biological_process | 1112 Inferred from Electronic Annotation | cellular_component | 1227 Inferred from Electronic Annotation | molecular_function | 2783 Inferred from Experiment | molecular_function | 19 Inferred from Experiment | cellular_component | 28 Inferred from Experiment | biological_process | 51 Inferred from Expression Pattern | biological_process | 91 Inferred from Genetic Interaction | cellular_component | 69 Inferred from Genetic Interaction | biological_process | 727 Inferred from Genetic Interaction | molecular_function | 135 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | molecular_function | 511 Inferred from Mutant Phenotype | biological_process | 3747 Inferred from Mutant Phenotype | cellular_component | 83 Inferred from Physical Interaction | biological_process | 84 Inferred from Physical Interaction | cellular_component | 98 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 1311 inferred from Reviewed Computational Analysis | molecular_function | 239 inferred from Reviewed Computational Analysis | cellular_component | 241 inferred from Reviewed Computational Analysis | biological_process | 24 Inferred from Sequence Model | cellular_component | 50 Inferred from Sequence Model | molecular_function | 340 Inferred from Sequence Model | biological_process | 196 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | PSI-MOD | 41 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence or Structural Similarity | cellular_component | 716 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | molecular_function | 574 Inferred from Sequence or Structural Similarity | biological_process | 755 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence Orthology | molecular_function | 1485 Inferred from Sequence Orthology | cellular_component | 2374 Inferred from Sequence Orthology | biological_process | 2993 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 22151 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | biological_process | 783 Non-traceable Author Statement | cellular_component | 304 Non-traceable Author Statement | molecular_function | 205 Northern assay evidence | gene_ex | 590 Northern assay evidence | fission_yeast_phenotype | 188 Other | fission_yeast_phenotype | 534 Other direct assay | fission_yeast_phenotype | 11 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 42 quantitative PCR | gene_ex | 36 quantitative PCR | fission_yeast_phenotype | 149 Reporter gene assay | fission_yeast_phenotype | 543 reporter gene assay evidence | gene_ex | 143 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 144 Substance quantification evidence | fission_yeast_phenotype | 509 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | fission_yeast_phenotype | 1 Traceable Author Statement | molecular_function | 120 Traceable Author Statement | sequence | 2 Traceable Author Statement | biological_process | 258 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | cellular_component | 141 Transcript expression level evidence | fission_yeast_phenotype | 1269 Western blot assay | fission_yeast_phenotype | 932 Western blot evidence | fission_yeast_phenotype | 1 Western blot evidence | gene_ex | 187 (103 rows) total: count -------- 171946 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 338 | PSI-MOD 799 | molecular_function 1117 | cellular_component 1665 | biological_process 7065 | PomBase annotation extension terms 12698 | fission_yeast_phenotype (6 rows) total ------- 23682 (1 row)