counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 4 | external_link 21 | ex_tools 27 | cat_act 32 | pathway 89 | m_f_g 139 | subunit_composition 230 | genome_org 281 | complementation 296 | misc 560 | disease_associated 834 | name_description 837 | EC numbers 945 | sequence 1608 | warning 1858 | PomBase family or domain 5145 | PomBase gene characterisation status 7017 | PomBase gene products 8957 | molecular_function 10899 | PSI-MOD 11879 | biological_process 15873 | cellular_component 24547 | species_dist 36559 | gene_ex 44125 | fission_yeast_phenotype (25 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Non-traceable Author Statement | biological_process | 764 Inferred from Sequence Orthology | biological_process | 2961 Inferred from Mutant Phenotype | biological_process | 3668 Inferred from Direct Assay | biological_process | 655 Inferred from Physical Interaction | biological_process | 83 Inferred by Curator | biological_process | 602 inferred from Reviewed Computational Analysis | biological_process | 24 Inferred from Sequence or Structural Similarity | biological_process | 746 Inferred from Expression Pattern | biological_process | 80 Traceable Author Statement | biological_process | 253 Inferred from Sequence Model | biological_process | 212 Inferred from Electronic Annotation | biological_process | 1053 Inferred from Experiment | biological_process | 51 Inferred from Genetic Interaction | biological_process | 727 Inferred from Sequence Model | cellular_component | 50 Inferred from Sequence Orthology | cellular_component | 2376 Inferred from Direct Assay | cellular_component | 10320 Inferred from Sequence or Structural Similarity | cellular_component | 713 Inferred from Mutant Phenotype | cellular_component | 80 Inferred by Curator | cellular_component | 259 Inferred from Genetic Interaction | cellular_component | 69 Inferred from Electronic Annotation | cellular_component | 1194 Traceable Author Statement | cellular_component | 138 Inferred from Experiment | cellular_component | 28 Inferred from Physical Interaction | cellular_component | 101 inferred from Reviewed Computational Analysis | cellular_component | 241 Non-traceable Author Statement | cellular_component | 304 Non-traceable Author Statement | complementation | 1 Plasmid maintenance assay evidence | fission_yeast_phenotype | 44 Traceable Author Statement | fission_yeast_phenotype | 1 Microscopy | fission_yeast_phenotype | 22619 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 318 Flow cytometry data | fission_yeast_phenotype | 506 Two-hybrid | fission_yeast_phenotype | 47 Enzyme assay data | fission_yeast_phenotype | 988 Co-immunoprecipitation experiment | fission_yeast_phenotype | 228 Western blot assay | fission_yeast_phenotype | 1040 Substance quantification evidence | fission_yeast_phenotype | 528 Other | fission_yeast_phenotype | 565 Cell growth assay | fission_yeast_phenotype | 12463 experimental phenotypic evidence | fission_yeast_phenotype | 493 Transcript expression level evidence | fission_yeast_phenotype | 1303 competitive growth assay evidence | fission_yeast_phenotype | 497 Chromatography evidence | fission_yeast_phenotype | 26 Substance quantification | fission_yeast_phenotype | 117 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 91 Western blot evidence | fission_yeast_phenotype | 1 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Immunolocalization experiment data | fission_yeast_phenotype | 7 Northern assay evidence | fission_yeast_phenotype | 185 quantitative PCR | fission_yeast_phenotype | 149 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 860 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Reporter gene assay | fission_yeast_phenotype | 582 Other direct assay | fission_yeast_phenotype | 11 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 RNA protection assay evidence | gene_ex | 15 immunofluorescence evidence | gene_ex | 6 quantitative PCR | gene_ex | 40 Northern assay evidence | gene_ex | 591 in situ hybridization assay evidence | gene_ex | 14 expression microarray evidence | gene_ex | 1378 fusion protein localization evidence | gene_ex | 3 mass spectrometry evidence | gene_ex | 13682 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 experimental evidence | gene_ex | 20411 Western blot evidence | gene_ex | 204 reporter gene assay evidence | gene_ex | 143 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | misc | 2 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Electronic Annotation | molecular_function | 2626 Inferred by Curator | molecular_function | 55 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence Model | molecular_function | 359 Inferred from Mutant Phenotype | molecular_function | 512 Non-traceable Author Statement | molecular_function | 246 Inferred from Direct Assay | molecular_function | 1259 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence or Structural Similarity | molecular_function | 574 Inferred from Sequence Orthology | molecular_function | 1489 Inferred from Genetic Interaction | molecular_function | 134 Traceable Author Statement | molecular_function | 121 Inferred from Physical Interaction | molecular_function | 1319 Inferred from Experiment | molecular_function | 22 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | PSI-MOD | 2565 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence Model | PSI-MOD | 2 Traceable Author Statement | PSI-MOD | 1 Inferred from Mutant Phenotype | sequence | 7 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | warning | 105 (104 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Traceable Author Statement | fission_yeast_phenotype | 1 Western blot evidence | fission_yeast_phenotype | 1 Non-traceable Author Statement | complementation | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | misc | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Key Residues | molecular_function | 1 Traceable Author Statement | sequence | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Direct Assay | sequence | 2 Inferred from Physical Interaction | misc | 2 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Inferred from Direct Assay | subunit_composition | 3 fusion protein localization evidence | gene_ex | 3 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Immunolocalization experiment data | fission_yeast_phenotype | 7 Inferred from Mutant Phenotype | sequence | 7 Particle size and count assay | fission_yeast_phenotype | 9 Other direct assay | fission_yeast_phenotype | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Inferred from Experiment | molecular_function | 22 inferred from Reviewed Computational Analysis | biological_process | 24 Chromatography evidence | fission_yeast_phenotype | 26 Inferred from Experiment | cellular_component | 28 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 quantitative PCR | gene_ex | 40 Inferred from Sequence or Structural Similarity | m_f_g | 42 Plasmid maintenance assay evidence | fission_yeast_phenotype | 44 Two-hybrid | fission_yeast_phenotype | 47 Inferred from Sequence Model | cellular_component | 50 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Inferred from Experiment | biological_process | 51 Inferred by Curator | molecular_function | 55 Inferred from Genetic Interaction | cellular_component | 69 Inferred from Expression Pattern | biological_process | 80 Inferred from Mutant Phenotype | cellular_component | 80 Inferred from Physical Interaction | biological_process | 83 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 91 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Physical Interaction | cellular_component | 101 Inferred from Sequence or Structural Similarity | warning | 105 Substance quantification | fission_yeast_phenotype | 117 Traceable Author Statement | molecular_function | 121 Inferred from Genetic Interaction | molecular_function | 134 Traceable Author Statement | cellular_component | 138 reporter gene assay evidence | gene_ex | 143 quantitative PCR | fission_yeast_phenotype | 149 Northern assay evidence | fission_yeast_phenotype | 185 Western blot evidence | gene_ex | 204 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Sequence Model | biological_process | 212 Co-immunoprecipitation experiment | fission_yeast_phenotype | 228 inferred from Reviewed Computational Analysis | molecular_function | 240 inferred from Reviewed Computational Analysis | cellular_component | 241 Non-traceable Author Statement | molecular_function | 246 Traceable Author Statement | biological_process | 253 Inferred by Curator | cellular_component | 259 Non-traceable Author Statement | cellular_component | 304 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 318 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence Model | molecular_function | 359 experimental phenotypic evidence | fission_yeast_phenotype | 493 competitive growth assay evidence | fission_yeast_phenotype | 497 Flow cytometry data | fission_yeast_phenotype | 506 Inferred from Mutant Phenotype | molecular_function | 512 Substance quantification evidence | fission_yeast_phenotype | 528 Other | fission_yeast_phenotype | 565 Inferred from Sequence or Structural Similarity | molecular_function | 574 Reporter gene assay | fission_yeast_phenotype | 582 Northern assay evidence | gene_ex | 591 Inferred by Curator | biological_process | 602 Inferred from Direct Assay | biological_process | 655 Inferred from Sequence or Structural Similarity | cellular_component | 713 Inferred from Genetic Interaction | biological_process | 727 Inferred from Sequence or Structural Similarity | biological_process | 746 Non-traceable Author Statement | biological_process | 764 gel electrophoresis evidence | fission_yeast_phenotype | 860 Enzyme assay data | fission_yeast_phenotype | 988 Western blot assay | fission_yeast_phenotype | 1040 Inferred from Electronic Annotation | biological_process | 1053 Inferred from Electronic Annotation | cellular_component | 1194 Inferred from Direct Assay | molecular_function | 1259 Transcript expression level evidence | fission_yeast_phenotype | 1303 Inferred from Physical Interaction | molecular_function | 1319 expression microarray evidence | gene_ex | 1378 Inferred from Sequence Orthology | molecular_function | 1489 Inferred from Sequence Orthology | cellular_component | 2376 Inferred from Direct Assay | PSI-MOD | 2565 Inferred from Electronic Annotation | molecular_function | 2626 Inferred from Sequence Orthology | biological_process | 2961 Inferred from Mutant Phenotype | biological_process | 3668 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | cellular_component | 10320 Cell growth assay | fission_yeast_phenotype | 12463 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20411 Microscopy | fission_yeast_phenotype | 22619 (104 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 12463 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 318 Chromatography evidence | fission_yeast_phenotype | 26 Co-immunoprecipitation experiment | fission_yeast_phenotype | 228 competitive growth assay evidence | fission_yeast_phenotype | 497 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 91 Enzyme assay data | fission_yeast_phenotype | 988 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 experimental evidence | gene_ex | 20411 experimental evidence | PSI-MOD | 8143 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1378 Flow cytometry data | fission_yeast_phenotype | 506 fusion protein localization evidence | gene_ex | 3 gel electrophoresis evidence | fission_yeast_phenotype | 860 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 7 Inferred by Curator | biological_process | 602 Inferred by Curator | cellular_component | 259 Inferred by Curator | molecular_function | 55 Inferred from Direct Assay | biological_process | 655 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1259 Inferred from Direct Assay | PSI-MOD | 2565 Inferred from Direct Assay | cellular_component | 10320 Inferred from Direct Assay | sequence | 2 Inferred from Electronic Annotation | biological_process | 1053 Inferred from Electronic Annotation | cellular_component | 1194 Inferred from Electronic Annotation | molecular_function | 2626 Inferred from Experiment | cellular_component | 28 Inferred from Experiment | molecular_function | 22 Inferred from Experiment | biological_process | 51 Inferred from Expression Pattern | biological_process | 80 Inferred from Genetic Interaction | molecular_function | 134 Inferred from Genetic Interaction | biological_process | 727 Inferred from Genetic Interaction | cellular_component | 69 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | cellular_component | 80 Inferred from Mutant Phenotype | molecular_function | 512 Inferred from Mutant Phenotype | biological_process | 3668 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | biological_process | 83 Inferred from Physical Interaction | molecular_function | 1319 Inferred from Physical Interaction | cellular_component | 101 Inferred from Physical Interaction | misc | 2 inferred from Reviewed Computational Analysis | cellular_component | 241 inferred from Reviewed Computational Analysis | molecular_function | 240 inferred from Reviewed Computational Analysis | biological_process | 24 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | molecular_function | 359 Inferred from Sequence Model | biological_process | 212 Inferred from Sequence Model | cellular_component | 50 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | cellular_component | 713 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | molecular_function | 574 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | biological_process | 746 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence Orthology | biological_process | 2961 Inferred from Sequence Orthology | cellular_component | 2376 Inferred from Sequence Orthology | molecular_function | 1489 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 22619 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 246 Non-traceable Author Statement | biological_process | 764 Non-traceable Author Statement | cellular_component | 304 Northern assay evidence | gene_ex | 591 Northern assay evidence | fission_yeast_phenotype | 185 Other | fission_yeast_phenotype | 565 Other direct assay | fission_yeast_phenotype | 11 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 44 quantitative PCR | fission_yeast_phenotype | 149 quantitative PCR | gene_ex | 40 Reporter gene assay | fission_yeast_phenotype | 582 reporter gene assay evidence | gene_ex | 143 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 117 Substance quantification evidence | fission_yeast_phenotype | 528 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | cellular_component | 138 Traceable Author Statement | biological_process | 253 Traceable Author Statement | sequence | 2 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | molecular_function | 121 Traceable Author Statement | fission_yeast_phenotype | 1 Transcript expression level evidence | fission_yeast_phenotype | 1303 Two-hybrid | fission_yeast_phenotype | 47 Western blot assay | fission_yeast_phenotype | 1040 Western blot evidence | gene_ex | 204 Western blot evidence | fission_yeast_phenotype | 1 (104 rows) total: count -------- 172764 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 361 | PSI-MOD 832 | molecular_function 1150 | cellular_component 1662 | biological_process 7564 | PomBase annotation extension terms 13076 | fission_yeast_phenotype (6 rows) total ------- 24645 (1 row)