counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 4 | external_link 21 | ex_tools 27 | cat_act 32 | pathway 89 | m_f_g 142 | subunit_composition 231 | genome_org 290 | complementation 300 | misc 560 | disease_associated 837 | EC numbers 843 | name_description 945 | sequence 1608 | warning 1860 | PomBase family or domain 5145 | PomBase gene characterisation status 7017 | PomBase gene products 8973 | molecular_function 10912 | PSI-MOD 11800 | biological_process 15949 | cellular_component 24547 | species_dist 36581 | gene_ex 44921 | fission_yeast_phenotype (25 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Non-traceable Author Statement | biological_process | 748 Inferred from Sequence Orthology | biological_process | 2945 Inferred from Mutant Phenotype | biological_process | 3654 Inferred from Direct Assay | biological_process | 655 Inferred from Physical Interaction | biological_process | 80 Inferred by Curator | biological_process | 603 inferred from Reviewed Computational Analysis | biological_process | 24 Inferred from Sequence or Structural Similarity | biological_process | 736 Inferred from Expression Pattern | biological_process | 77 Traceable Author Statement | biological_process | 239 Inferred from Sequence Model | biological_process | 211 Inferred from Electronic Annotation | biological_process | 1055 Inferred from Experiment | biological_process | 53 Inferred from Genetic Interaction | biological_process | 720 Inferred from Sequence Model | cellular_component | 51 Inferred from Sequence Orthology | cellular_component | 2437 Inferred from Direct Assay | cellular_component | 10390 Inferred from Sequence or Structural Similarity | cellular_component | 712 Inferred from Mutant Phenotype | cellular_component | 82 Inferred by Curator | cellular_component | 248 Inferred from Genetic Interaction | cellular_component | 69 Inferred from Electronic Annotation | cellular_component | 1160 Traceable Author Statement | cellular_component | 129 Inferred from Experiment | cellular_component | 28 Inferred from Physical Interaction | cellular_component | 101 inferred from Reviewed Computational Analysis | cellular_component | 241 Non-traceable Author Statement | cellular_component | 301 Non-traceable Author Statement | complementation | 1 Plasmid maintenance assay evidence | fission_yeast_phenotype | 44 Traceable Author Statement | fission_yeast_phenotype | 1 Microscopy | fission_yeast_phenotype | 22829 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 320 Flow cytometry data | fission_yeast_phenotype | 522 Two-hybrid | fission_yeast_phenotype | 47 Enzyme assay data | fission_yeast_phenotype | 1009 Co-immunoprecipitation experiment | fission_yeast_phenotype | 229 Western blot assay | fission_yeast_phenotype | 1063 Substance quantification evidence | fission_yeast_phenotype | 536 Other | fission_yeast_phenotype | 571 Cell growth assay | fission_yeast_phenotype | 12926 experimental phenotypic evidence | fission_yeast_phenotype | 493 Transcript expression level evidence | fission_yeast_phenotype | 1312 competitive growth assay evidence | fission_yeast_phenotype | 497 Chromatography evidence | fission_yeast_phenotype | 26 Substance quantification | fission_yeast_phenotype | 117 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 91 Western blot evidence | fission_yeast_phenotype | 1 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Immunolocalization experiment data | fission_yeast_phenotype | 7 Northern assay evidence | fission_yeast_phenotype | 185 quantitative PCR | fission_yeast_phenotype | 149 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 869 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Reporter gene assay | fission_yeast_phenotype | 609 Other direct assay | fission_yeast_phenotype | 11 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 RNA protection assay evidence | gene_ex | 15 immunofluorescence evidence | gene_ex | 6 quantitative PCR | gene_ex | 40 Northern assay evidence | gene_ex | 603 in situ hybridization assay evidence | gene_ex | 14 expression microarray evidence | gene_ex | 1378 fusion protein localization evidence | gene_ex | 3 mass spectrometry evidence | gene_ex | 13682 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 experimental evidence | gene_ex | 20412 Western blot evidence | gene_ex | 213 reporter gene assay evidence | gene_ex | 143 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | misc | 2 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Electronic Annotation | molecular_function | 2600 Inferred by Curator | molecular_function | 55 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence Model | molecular_function | 357 Inferred from Mutant Phenotype | molecular_function | 523 Non-traceable Author Statement | molecular_function | 244 Inferred from Direct Assay | molecular_function | 1273 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence or Structural Similarity | molecular_function | 571 Inferred from Sequence Orthology | molecular_function | 1491 Inferred from Genetic Interaction | molecular_function | 134 Traceable Author Statement | molecular_function | 139 Inferred from Physical Interaction | molecular_function | 1323 Inferred from Experiment | molecular_function | 22 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | PSI-MOD | 2578 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence Model | PSI-MOD | 2 Traceable Author Statement | PSI-MOD | 1 Inferred from Mutant Phenotype | sequence | 7 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | warning | 105 (104 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Traceable Author Statement | fission_yeast_phenotype | 1 Western blot evidence | fission_yeast_phenotype | 1 Non-traceable Author Statement | complementation | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | misc | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Key Residues | molecular_function | 1 Traceable Author Statement | sequence | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Direct Assay | sequence | 2 Inferred from Physical Interaction | misc | 2 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Inferred from Direct Assay | subunit_composition | 3 fusion protein localization evidence | gene_ex | 3 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Immunolocalization experiment data | fission_yeast_phenotype | 7 Inferred from Mutant Phenotype | sequence | 7 Particle size and count assay | fission_yeast_phenotype | 9 Other direct assay | fission_yeast_phenotype | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Inferred from Experiment | molecular_function | 22 inferred from Reviewed Computational Analysis | biological_process | 24 Chromatography evidence | fission_yeast_phenotype | 26 Inferred from Experiment | cellular_component | 28 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 quantitative PCR | gene_ex | 40 Inferred from Sequence or Structural Similarity | m_f_g | 42 Plasmid maintenance assay evidence | fission_yeast_phenotype | 44 Two-hybrid | fission_yeast_phenotype | 47 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Inferred from Sequence Model | cellular_component | 51 Inferred from Experiment | biological_process | 53 Inferred by Curator | molecular_function | 55 Inferred from Genetic Interaction | cellular_component | 69 Inferred from Expression Pattern | biological_process | 77 Inferred from Physical Interaction | biological_process | 80 Inferred from Mutant Phenotype | cellular_component | 82 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 91 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Physical Interaction | cellular_component | 101 Inferred from Sequence or Structural Similarity | warning | 105 Substance quantification | fission_yeast_phenotype | 117 Traceable Author Statement | cellular_component | 129 Inferred from Genetic Interaction | molecular_function | 134 Traceable Author Statement | molecular_function | 139 reporter gene assay evidence | gene_ex | 143 quantitative PCR | fission_yeast_phenotype | 149 Northern assay evidence | fission_yeast_phenotype | 185 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Sequence Model | biological_process | 211 Western blot evidence | gene_ex | 213 Co-immunoprecipitation experiment | fission_yeast_phenotype | 229 Traceable Author Statement | biological_process | 239 inferred from Reviewed Computational Analysis | molecular_function | 240 inferred from Reviewed Computational Analysis | cellular_component | 241 Non-traceable Author Statement | molecular_function | 244 Inferred by Curator | cellular_component | 248 Non-traceable Author Statement | cellular_component | 301 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 320 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence Model | molecular_function | 357 experimental phenotypic evidence | fission_yeast_phenotype | 493 competitive growth assay evidence | fission_yeast_phenotype | 497 Flow cytometry data | fission_yeast_phenotype | 522 Inferred from Mutant Phenotype | molecular_function | 523 Substance quantification evidence | fission_yeast_phenotype | 536 Inferred from Sequence or Structural Similarity | molecular_function | 571 Other | fission_yeast_phenotype | 571 Inferred by Curator | biological_process | 603 Northern assay evidence | gene_ex | 603 Reporter gene assay | fission_yeast_phenotype | 609 Inferred from Direct Assay | biological_process | 655 Inferred from Sequence or Structural Similarity | cellular_component | 712 Inferred from Genetic Interaction | biological_process | 720 Inferred from Sequence or Structural Similarity | biological_process | 736 Non-traceable Author Statement | biological_process | 748 gel electrophoresis evidence | fission_yeast_phenotype | 869 Enzyme assay data | fission_yeast_phenotype | 1009 Inferred from Electronic Annotation | biological_process | 1055 Western blot assay | fission_yeast_phenotype | 1063 Inferred from Electronic Annotation | cellular_component | 1160 Inferred from Direct Assay | molecular_function | 1273 Transcript expression level evidence | fission_yeast_phenotype | 1312 Inferred from Physical Interaction | molecular_function | 1323 expression microarray evidence | gene_ex | 1378 Inferred from Sequence Orthology | molecular_function | 1491 Inferred from Sequence Orthology | cellular_component | 2437 Inferred from Direct Assay | PSI-MOD | 2578 Inferred from Electronic Annotation | molecular_function | 2600 Inferred from Sequence Orthology | biological_process | 2945 Inferred from Mutant Phenotype | biological_process | 3654 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | cellular_component | 10390 Cell growth assay | fission_yeast_phenotype | 12926 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20412 Microscopy | fission_yeast_phenotype | 22829 (104 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 12926 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 320 Chromatography evidence | fission_yeast_phenotype | 26 Co-immunoprecipitation experiment | fission_yeast_phenotype | 229 competitive growth assay evidence | fission_yeast_phenotype | 497 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 91 Enzyme assay data | fission_yeast_phenotype | 1009 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 experimental evidence | gene_ex | 20412 experimental evidence | PSI-MOD | 8143 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1378 Flow cytometry data | fission_yeast_phenotype | 522 fusion protein localization evidence | gene_ex | 3 gel electrophoresis evidence | fission_yeast_phenotype | 869 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 7 Inferred by Curator | biological_process | 603 Inferred by Curator | cellular_component | 248 Inferred by Curator | molecular_function | 55 Inferred from Direct Assay | biological_process | 655 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1273 Inferred from Direct Assay | PSI-MOD | 2578 Inferred from Direct Assay | cellular_component | 10390 Inferred from Direct Assay | sequence | 2 Inferred from Electronic Annotation | biological_process | 1055 Inferred from Electronic Annotation | cellular_component | 1160 Inferred from Electronic Annotation | molecular_function | 2600 Inferred from Experiment | cellular_component | 28 Inferred from Experiment | molecular_function | 22 Inferred from Experiment | biological_process | 53 Inferred from Expression Pattern | biological_process | 77 Inferred from Genetic Interaction | molecular_function | 134 Inferred from Genetic Interaction | biological_process | 720 Inferred from Genetic Interaction | cellular_component | 69 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | cellular_component | 82 Inferred from Mutant Phenotype | molecular_function | 523 Inferred from Mutant Phenotype | biological_process | 3654 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | biological_process | 80 Inferred from Physical Interaction | molecular_function | 1323 Inferred from Physical Interaction | cellular_component | 101 Inferred from Physical Interaction | misc | 2 inferred from Reviewed Computational Analysis | cellular_component | 241 inferred from Reviewed Computational Analysis | molecular_function | 240 inferred from Reviewed Computational Analysis | biological_process | 24 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | molecular_function | 357 Inferred from Sequence Model | biological_process | 211 Inferred from Sequence Model | cellular_component | 51 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | cellular_component | 712 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | molecular_function | 571 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | biological_process | 736 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence Orthology | biological_process | 2945 Inferred from Sequence Orthology | cellular_component | 2437 Inferred from Sequence Orthology | molecular_function | 1491 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 22829 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 244 Non-traceable Author Statement | biological_process | 748 Non-traceable Author Statement | cellular_component | 301 Northern assay evidence | gene_ex | 603 Northern assay evidence | fission_yeast_phenotype | 185 Other | fission_yeast_phenotype | 571 Other direct assay | fission_yeast_phenotype | 11 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 44 quantitative PCR | fission_yeast_phenotype | 149 quantitative PCR | gene_ex | 40 Reporter gene assay | fission_yeast_phenotype | 609 reporter gene assay evidence | gene_ex | 143 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 117 Substance quantification evidence | fission_yeast_phenotype | 536 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | cellular_component | 129 Traceable Author Statement | biological_process | 239 Traceable Author Statement | sequence | 2 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | molecular_function | 139 Traceable Author Statement | fission_yeast_phenotype | 1 Transcript expression level evidence | fission_yeast_phenotype | 1312 Two-hybrid | fission_yeast_phenotype | 47 Western blot assay | fission_yeast_phenotype | 1063 Western blot evidence | gene_ex | 213 Western blot evidence | fission_yeast_phenotype | 1 (104 rows) total: count -------- 173636 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 372 | PSI-MOD 860 | molecular_function 1223 | cellular_component 1710 | biological_process 7687 | PomBase annotation extension terms 13501 | fission_yeast_phenotype (6 rows) total ------- 25353 (1 row)