counts of all annotation by type:
count | cv_name
-------+--------------------------------------
2 | DNA_binding_specificity
4 | external_link
21 | ex_tools
27 | cat_act
32 | pathway
89 | m_f_g
142 | subunit_composition
231 | genome_org
290 | complementation
300 | misc
560 | disease_associated
837 | EC numbers
843 | name_description
945 | sequence
1608 | warning
1860 | PomBase family or domain
5145 | PomBase gene characterisation status
7017 | PomBase gene products
8973 | molecular_function
10912 | PSI-MOD
11800 | biological_process
15949 | cellular_component
24547 | species_dist
36581 | gene_ex
44921 | fission_yeast_phenotype
(25 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Non-traceable Author Statement | biological_process | 748
Inferred from Sequence Orthology | biological_process | 2945
Inferred from Mutant Phenotype | biological_process | 3654
Inferred from Direct Assay | biological_process | 655
Inferred from Physical Interaction | biological_process | 80
Inferred by Curator | biological_process | 603
inferred from Reviewed Computational Analysis | biological_process | 24
Inferred from Sequence or Structural Similarity | biological_process | 736
Inferred from Expression Pattern | biological_process | 77
Traceable Author Statement | biological_process | 239
Inferred from Sequence Model | biological_process | 211
Inferred from Electronic Annotation | biological_process | 1055
Inferred from Experiment | biological_process | 53
Inferred from Genetic Interaction | biological_process | 720
Inferred from Sequence Model | cellular_component | 51
Inferred from Sequence Orthology | cellular_component | 2437
Inferred from Direct Assay | cellular_component | 10390
Inferred from Sequence or Structural Similarity | cellular_component | 712
Inferred from Mutant Phenotype | cellular_component | 82
Inferred by Curator | cellular_component | 248
Inferred from Genetic Interaction | cellular_component | 69
Inferred from Electronic Annotation | cellular_component | 1160
Traceable Author Statement | cellular_component | 129
Inferred from Experiment | cellular_component | 28
Inferred from Physical Interaction | cellular_component | 101
inferred from Reviewed Computational Analysis | cellular_component | 241
Non-traceable Author Statement | cellular_component | 301
Non-traceable Author Statement | complementation | 1
Plasmid maintenance assay evidence | fission_yeast_phenotype | 44
Traceable Author Statement | fission_yeast_phenotype | 1
Microscopy | fission_yeast_phenotype | 22829
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 320
Flow cytometry data | fission_yeast_phenotype | 522
Two-hybrid | fission_yeast_phenotype | 47
Enzyme assay data | fission_yeast_phenotype | 1009
Co-immunoprecipitation experiment | fission_yeast_phenotype | 229
Western blot assay | fission_yeast_phenotype | 1063
Substance quantification evidence | fission_yeast_phenotype | 536
Other | fission_yeast_phenotype | 571
Cell growth assay | fission_yeast_phenotype | 12926
experimental phenotypic evidence | fission_yeast_phenotype | 493
Transcript expression level evidence | fission_yeast_phenotype | 1312
competitive growth assay evidence | fission_yeast_phenotype | 497
Chromatography evidence | fission_yeast_phenotype | 26
Substance quantification | fission_yeast_phenotype | 117
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 91
Western blot evidence | fission_yeast_phenotype | 1
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33
Immunolocalization experiment data | fission_yeast_phenotype | 7
Northern assay evidence | fission_yeast_phenotype | 185
quantitative PCR | fission_yeast_phenotype | 149
Particle size and count assay | fission_yeast_phenotype | 9
gel electrophoresis evidence | fission_yeast_phenotype | 869
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Reporter gene assay | fission_yeast_phenotype | 609
Other direct assay | fission_yeast_phenotype | 11
Inferred from Mutant Phenotype | fission_yeast_phenotype | 3
RNA protection assay evidence | gene_ex | 15
immunofluorescence evidence | gene_ex | 6
quantitative PCR | gene_ex | 40
Northern assay evidence | gene_ex | 603
in situ hybridization assay evidence | gene_ex | 14
expression microarray evidence | gene_ex | 1378
fusion protein localization evidence | gene_ex | 3
mass spectrometry evidence | gene_ex | 13682
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51
experimental evidence | gene_ex | 20412
Western blot evidence | gene_ex | 213
reporter gene assay evidence | gene_ex | 143
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Physical Interaction | misc | 2
Inferred from Mutant Phenotype | misc | 4
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Electronic Annotation | molecular_function | 2600
Inferred by Curator | molecular_function | 55
Inferred from Key Residues | molecular_function | 1
Inferred from Sequence Model | molecular_function | 357
Inferred from Mutant Phenotype | molecular_function | 523
Non-traceable Author Statement | molecular_function | 244
Inferred from Direct Assay | molecular_function | 1273
inferred from Reviewed Computational Analysis | molecular_function | 240
Inferred from Sequence or Structural Similarity | molecular_function | 571
Inferred from Sequence Orthology | molecular_function | 1491
Inferred from Genetic Interaction | molecular_function | 134
Traceable Author Statement | molecular_function | 139
Inferred from Physical Interaction | molecular_function | 1323
Inferred from Experiment | molecular_function | 22
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Traceable Author Statement | PomBase family or domain | 5
experimental evidence | PSI-MOD | 8143
Inferred from Direct Assay | PSI-MOD | 2578
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence Model | PSI-MOD | 2
Traceable Author Statement | PSI-MOD | 1
Inferred from Mutant Phenotype | sequence | 7
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | sequence | 2
Inferred from Sequence or Structural Similarity | sequence | 356
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Direct Assay | subunit_composition | 3
Inferred from Sequence or Structural Similarity | warning | 105
(104 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Traceable Author Statement | fission_yeast_phenotype | 1
Western blot evidence | fission_yeast_phenotype | 1
Non-traceable Author Statement | complementation | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | misc | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Key Residues | molecular_function | 1
Traceable Author Statement | sequence | 2
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Direct Assay | sequence | 2
Inferred from Physical Interaction | misc | 2
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2
Inferred from Direct Assay | subunit_composition | 3
fusion protein localization evidence | gene_ex | 3
Inferred from Mutant Phenotype | fission_yeast_phenotype | 3
Inferred from Mutant Phenotype | misc | 4
Traceable Author Statement | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Immunolocalization experiment data | fission_yeast_phenotype | 7
Inferred from Mutant Phenotype | sequence | 7
Particle size and count assay | fission_yeast_phenotype | 9
Other direct assay | fission_yeast_phenotype | 11
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
RNA protection assay evidence | gene_ex | 15
Inferred from Experiment | molecular_function | 22
inferred from Reviewed Computational Analysis | biological_process | 24
Chromatography evidence | fission_yeast_phenotype | 26
Inferred from Experiment | cellular_component | 28
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33
quantitative PCR | gene_ex | 40
Inferred from Sequence or Structural Similarity | m_f_g | 42
Plasmid maintenance assay evidence | fission_yeast_phenotype | 44
Two-hybrid | fission_yeast_phenotype | 47
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51
Inferred from Sequence Model | cellular_component | 51
Inferred from Experiment | biological_process | 53
Inferred by Curator | molecular_function | 55
Inferred from Genetic Interaction | cellular_component | 69
Inferred from Expression Pattern | biological_process | 77
Inferred from Physical Interaction | biological_process | 80
Inferred from Mutant Phenotype | cellular_component | 82
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 91
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Physical Interaction | cellular_component | 101
Inferred from Sequence or Structural Similarity | warning | 105
Substance quantification | fission_yeast_phenotype | 117
Traceable Author Statement | cellular_component | 129
Inferred from Genetic Interaction | molecular_function | 134
Traceable Author Statement | molecular_function | 139
reporter gene assay evidence | gene_ex | 143
quantitative PCR | fission_yeast_phenotype | 149
Northern assay evidence | fission_yeast_phenotype | 185
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Sequence Model | biological_process | 211
Western blot evidence | gene_ex | 213
Co-immunoprecipitation experiment | fission_yeast_phenotype | 229
Traceable Author Statement | biological_process | 239
inferred from Reviewed Computational Analysis | molecular_function | 240
inferred from Reviewed Computational Analysis | cellular_component | 241
Non-traceable Author Statement | molecular_function | 244
Inferred by Curator | cellular_component | 248
Non-traceable Author Statement | cellular_component | 301
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 320
Inferred from Sequence or Structural Similarity | sequence | 356
Inferred from Sequence Model | molecular_function | 357
experimental phenotypic evidence | fission_yeast_phenotype | 493
competitive growth assay evidence | fission_yeast_phenotype | 497
Flow cytometry data | fission_yeast_phenotype | 522
Inferred from Mutant Phenotype | molecular_function | 523
Substance quantification evidence | fission_yeast_phenotype | 536
Inferred from Sequence or Structural Similarity | molecular_function | 571
Other | fission_yeast_phenotype | 571
Inferred by Curator | biological_process | 603
Northern assay evidence | gene_ex | 603
Reporter gene assay | fission_yeast_phenotype | 609
Inferred from Direct Assay | biological_process | 655
Inferred from Sequence or Structural Similarity | cellular_component | 712
Inferred from Genetic Interaction | biological_process | 720
Inferred from Sequence or Structural Similarity | biological_process | 736
Non-traceable Author Statement | biological_process | 748
gel electrophoresis evidence | fission_yeast_phenotype | 869
Enzyme assay data | fission_yeast_phenotype | 1009
Inferred from Electronic Annotation | biological_process | 1055
Western blot assay | fission_yeast_phenotype | 1063
Inferred from Electronic Annotation | cellular_component | 1160
Inferred from Direct Assay | molecular_function | 1273
Transcript expression level evidence | fission_yeast_phenotype | 1312
Inferred from Physical Interaction | molecular_function | 1323
expression microarray evidence | gene_ex | 1378
Inferred from Sequence Orthology | molecular_function | 1491
Inferred from Sequence Orthology | cellular_component | 2437
Inferred from Direct Assay | PSI-MOD | 2578
Inferred from Electronic Annotation | molecular_function | 2600
Inferred from Sequence Orthology | biological_process | 2945
Inferred from Mutant Phenotype | biological_process | 3654
experimental evidence | PSI-MOD | 8143
Inferred from Direct Assay | cellular_component | 10390
Cell growth assay | fission_yeast_phenotype | 12926
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 20412
Microscopy | fission_yeast_phenotype | 22829
(104 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Cell growth assay | fission_yeast_phenotype | 12926
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 320
Chromatography evidence | fission_yeast_phenotype | 26
Co-immunoprecipitation experiment | fission_yeast_phenotype | 229
competitive growth assay evidence | fission_yeast_phenotype | 497
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 91
Enzyme assay data | fission_yeast_phenotype | 1009
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2
experimental evidence | gene_ex | 20412
experimental evidence | PSI-MOD | 8143
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 1378
Flow cytometry data | fission_yeast_phenotype | 522
fusion protein localization evidence | gene_ex | 3
gel electrophoresis evidence | fission_yeast_phenotype | 869
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
Immunolocalization experiment data | fission_yeast_phenotype | 7
Inferred by Curator | biological_process | 603
Inferred by Curator | cellular_component | 248
Inferred by Curator | molecular_function | 55
Inferred from Direct Assay | biological_process | 655
Inferred from Direct Assay | subunit_composition | 3
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1273
Inferred from Direct Assay | PSI-MOD | 2578
Inferred from Direct Assay | cellular_component | 10390
Inferred from Direct Assay | sequence | 2
Inferred from Electronic Annotation | biological_process | 1055
Inferred from Electronic Annotation | cellular_component | 1160
Inferred from Electronic Annotation | molecular_function | 2600
Inferred from Experiment | cellular_component | 28
Inferred from Experiment | molecular_function | 22
Inferred from Experiment | biological_process | 53
Inferred from Expression Pattern | biological_process | 77
Inferred from Genetic Interaction | molecular_function | 134
Inferred from Genetic Interaction | biological_process | 720
Inferred from Genetic Interaction | cellular_component | 69
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | fission_yeast_phenotype | 3
Inferred from Mutant Phenotype | cellular_component | 82
Inferred from Mutant Phenotype | molecular_function | 523
Inferred from Mutant Phenotype | biological_process | 3654
Inferred from Mutant Phenotype | sequence | 7
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | biological_process | 80
Inferred from Physical Interaction | molecular_function | 1323
Inferred from Physical Interaction | cellular_component | 101
Inferred from Physical Interaction | misc | 2
inferred from Reviewed Computational Analysis | cellular_component | 241
inferred from Reviewed Computational Analysis | molecular_function | 240
inferred from Reviewed Computational Analysis | biological_process | 24
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | molecular_function | 357
Inferred from Sequence Model | biological_process | 211
Inferred from Sequence Model | cellular_component | 51
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | cellular_component | 712
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Sequence or Structural Similarity | warning | 105
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | molecular_function | 571
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | biological_process | 736
Inferred from Sequence or Structural Similarity | sequence | 356
Inferred from Sequence Orthology | biological_process | 2945
Inferred from Sequence Orthology | cellular_component | 2437
Inferred from Sequence Orthology | molecular_function | 1491
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
Microscopy | fission_yeast_phenotype | 22829
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 244
Non-traceable Author Statement | biological_process | 748
Non-traceable Author Statement | cellular_component | 301
Northern assay evidence | gene_ex | 603
Northern assay evidence | fission_yeast_phenotype | 185
Other | fission_yeast_phenotype | 571
Other direct assay | fission_yeast_phenotype | 11
Particle size and count assay | fission_yeast_phenotype | 9
Plasmid maintenance assay evidence | fission_yeast_phenotype | 44
quantitative PCR | fission_yeast_phenotype | 149
quantitative PCR | gene_ex | 40
Reporter gene assay | fission_yeast_phenotype | 609
reporter gene assay evidence | gene_ex | 143
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51
RNA protection assay evidence | gene_ex | 15
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33
Substance quantification | fission_yeast_phenotype | 117
Substance quantification evidence | fission_yeast_phenotype | 536
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | cellular_component | 129
Traceable Author Statement | biological_process | 239
Traceable Author Statement | sequence | 2
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | molecular_function | 139
Traceable Author Statement | fission_yeast_phenotype | 1
Transcript expression level evidence | fission_yeast_phenotype | 1312
Two-hybrid | fission_yeast_phenotype | 47
Western blot assay | fission_yeast_phenotype | 1063
Western blot evidence | gene_ex | 213
Western blot evidence | fission_yeast_phenotype | 1
(104 rows)
total:
count
--------
173636
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
372 | PSI-MOD
860 | molecular_function
1223 | cellular_component
1710 | biological_process
7687 | PomBase annotation extension terms
13501 | fission_yeast_phenotype
(6 rows)
total
-------
25353
(1 row)