counts of all annotation by type:
count | cv_name
-------+--------------------------------------
2 | DNA_binding_specificity
4 | external_link
21 | ex_tools
27 | cat_act
32 | pathway
89 | m_f_g
146 | subunit_composition
231 | genome_org
299 | complementation
312 | misc
580 | disease_associated
839 | EC numbers
848 | name_description
945 | sequence
1612 | warning
1860 | PomBase family or domain
5145 | PomBase gene characterisation status
7017 | PomBase gene products
8992 | molecular_function
10917 | PSI-MOD
11914 | biological_process
16088 | cellular_component
24534 | species_dist
36618 | gene_ex
45748 | fission_yeast_phenotype
(25 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Non-traceable Author Statement | biological_process | 671
Inferred from Sequence Orthology | biological_process | 2956
Inferred from Mutant Phenotype | biological_process | 3636
Inferred from Direct Assay | biological_process | 648
Inferred from Physical Interaction | biological_process | 81
Inferred by Curator | biological_process | 910
inferred from Reviewed Computational Analysis | biological_process | 24
Inferred from Sequence or Structural Similarity | biological_process | 745
Inferred from Expression Pattern | biological_process | 75
Traceable Author Statement | biological_process | 231
Inferred from Sequence Model | biological_process | 208
Inferred from Electronic Annotation | biological_process | 953
Inferred from Experiment | biological_process | 54
Inferred from Genetic Interaction | biological_process | 722
Inferred from Sequence Model | cellular_component | 49
Inferred from Sequence Orthology | cellular_component | 2441
Inferred from Direct Assay | cellular_component | 10466
Inferred from Sequence or Structural Similarity | cellular_component | 701
Inferred from Mutant Phenotype | cellular_component | 81
Inferred by Curator | cellular_component | 343
Inferred from Genetic Interaction | cellular_component | 58
Inferred from Electronic Annotation | cellular_component | 1147
Traceable Author Statement | cellular_component | 129
Inferred from Experiment | cellular_component | 28
Inferred from Physical Interaction | cellular_component | 101
inferred from Reviewed Computational Analysis | cellular_component | 241
Non-traceable Author Statement | cellular_component | 303
Non-traceable Author Statement | complementation | 1
Plasmid maintenance assay evidence | fission_yeast_phenotype | 44
Traceable Author Statement | fission_yeast_phenotype | 1
Microscopy | fission_yeast_phenotype | 23062
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 324
Flow cytometry data | fission_yeast_phenotype | 539
Two-hybrid | fission_yeast_phenotype | 47
Enzyme assay data | fission_yeast_phenotype | 1029
Co-immunoprecipitation experiment | fission_yeast_phenotype | 230
Western blot assay | fission_yeast_phenotype | 1101
Substance quantification evidence | fission_yeast_phenotype | 542
Other | fission_yeast_phenotype | 594
Cell growth assay | fission_yeast_phenotype | 13303
experimental phenotypic evidence | fission_yeast_phenotype | 493
Transcript expression level evidence | fission_yeast_phenotype | 1370
competitive growth assay evidence | fission_yeast_phenotype | 497
Chromatography evidence | fission_yeast_phenotype | 26
Substance quantification | fission_yeast_phenotype | 117
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 92
Western blot evidence | fission_yeast_phenotype | 1
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33
Immunolocalization experiment data | fission_yeast_phenotype | 7
Northern assay evidence | fission_yeast_phenotype | 185
quantitative PCR | fission_yeast_phenotype | 149
Particle size and count assay | fission_yeast_phenotype | 9
gel electrophoresis evidence | fission_yeast_phenotype | 912
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Reporter gene assay | fission_yeast_phenotype | 610
Other direct assay | fission_yeast_phenotype | 11
Inferred from Mutant Phenotype | fission_yeast_phenotype | 3
RNA protection assay evidence | gene_ex | 15
immunofluorescence evidence | gene_ex | 6
quantitative PCR | gene_ex | 40
Northern assay evidence | gene_ex | 631
in situ hybridization assay evidence | gene_ex | 14
expression microarray evidence | gene_ex | 1378
fusion protein localization evidence | gene_ex | 8
mass spectrometry evidence | gene_ex | 13682
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51
experimental evidence | gene_ex | 20412
Western blot evidence | gene_ex | 217
reporter gene assay evidence | gene_ex | 143
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Physical Interaction | misc | 2
Inferred from Mutant Phenotype | misc | 4
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Electronic Annotation | molecular_function | 2515
Inferred by Curator | molecular_function | 141
Inferred from Key Residues | molecular_function | 1
Inferred from Sequence Model | molecular_function | 363
Inferred from Mutant Phenotype | molecular_function | 524
Non-traceable Author Statement | molecular_function | 244
Inferred from Direct Assay | molecular_function | 1276
inferred from Reviewed Computational Analysis | molecular_function | 240
Inferred from Sequence or Structural Similarity | molecular_function | 565
Inferred from Sequence Orthology | molecular_function | 1501
Inferred from Genetic Interaction | molecular_function | 134
Traceable Author Statement | molecular_function | 139
Inferred from Physical Interaction | molecular_function | 1326
Inferred from Experiment | molecular_function | 23
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Traceable Author Statement | PomBase family or domain | 5
experimental evidence | PSI-MOD | 8143
Inferred from Direct Assay | PSI-MOD | 2583
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence Model | PSI-MOD | 2
Traceable Author Statement | PSI-MOD | 1
Inferred from Mutant Phenotype | sequence | 7
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | sequence | 2
Inferred from Sequence or Structural Similarity | sequence | 356
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Direct Assay | subunit_composition | 3
Inferred from Sequence or Structural Similarity | warning | 105
(104 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Traceable Author Statement | fission_yeast_phenotype | 1
Western blot evidence | fission_yeast_phenotype | 1
Non-traceable Author Statement | complementation | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | misc | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Key Residues | molecular_function | 1
Traceable Author Statement | sequence | 2
Inferred from Physical Interaction | misc | 2
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2
Inferred from Direct Assay | sequence | 2
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Mutant Phenotype | fission_yeast_phenotype | 3
Inferred from Direct Assay | subunit_composition | 3
Inferred from Mutant Phenotype | misc | 4
Traceable Author Statement | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Immunolocalization experiment data | fission_yeast_phenotype | 7
Inferred from Mutant Phenotype | sequence | 7
fusion protein localization evidence | gene_ex | 8
Particle size and count assay | fission_yeast_phenotype | 9
Other direct assay | fission_yeast_phenotype | 11
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
RNA protection assay evidence | gene_ex | 15
Inferred from Experiment | molecular_function | 23
inferred from Reviewed Computational Analysis | biological_process | 24
Chromatography evidence | fission_yeast_phenotype | 26
Inferred from Experiment | cellular_component | 28
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33
quantitative PCR | gene_ex | 40
Inferred from Sequence or Structural Similarity | m_f_g | 42
Plasmid maintenance assay evidence | fission_yeast_phenotype | 44
Two-hybrid | fission_yeast_phenotype | 47
Inferred from Sequence Model | cellular_component | 49
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51
Inferred from Experiment | biological_process | 54
Inferred from Genetic Interaction | cellular_component | 58
Inferred from Expression Pattern | biological_process | 75
Inferred from Physical Interaction | biological_process | 81
Inferred from Mutant Phenotype | cellular_component | 81
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 92
Inferred from Physical Interaction | cellular_component | 101
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | warning | 105
Substance quantification | fission_yeast_phenotype | 117
Traceable Author Statement | cellular_component | 129
Inferred from Genetic Interaction | molecular_function | 134
Traceable Author Statement | molecular_function | 139
Inferred by Curator | molecular_function | 141
reporter gene assay evidence | gene_ex | 143
quantitative PCR | fission_yeast_phenotype | 149
Northern assay evidence | fission_yeast_phenotype | 185
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Sequence Model | biological_process | 208
Western blot evidence | gene_ex | 217
Co-immunoprecipitation experiment | fission_yeast_phenotype | 230
Traceable Author Statement | biological_process | 231
inferred from Reviewed Computational Analysis | molecular_function | 240
inferred from Reviewed Computational Analysis | cellular_component | 241
Non-traceable Author Statement | molecular_function | 244
Non-traceable Author Statement | cellular_component | 303
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 324
Inferred by Curator | cellular_component | 343
Inferred from Sequence or Structural Similarity | sequence | 356
Inferred from Sequence Model | molecular_function | 363
experimental phenotypic evidence | fission_yeast_phenotype | 493
competitive growth assay evidence | fission_yeast_phenotype | 497
Inferred from Mutant Phenotype | molecular_function | 524
Flow cytometry data | fission_yeast_phenotype | 539
Substance quantification evidence | fission_yeast_phenotype | 542
Inferred from Sequence or Structural Similarity | molecular_function | 565
Other | fission_yeast_phenotype | 594
Reporter gene assay | fission_yeast_phenotype | 610
Northern assay evidence | gene_ex | 631
Inferred from Direct Assay | biological_process | 648
Non-traceable Author Statement | biological_process | 671
Inferred from Sequence or Structural Similarity | cellular_component | 701
Inferred from Genetic Interaction | biological_process | 722
Inferred from Sequence or Structural Similarity | biological_process | 745
Inferred by Curator | biological_process | 910
gel electrophoresis evidence | fission_yeast_phenotype | 912
Inferred from Electronic Annotation | biological_process | 953
Enzyme assay data | fission_yeast_phenotype | 1029
Western blot assay | fission_yeast_phenotype | 1101
Inferred from Electronic Annotation | cellular_component | 1147
Inferred from Direct Assay | molecular_function | 1276
Inferred from Physical Interaction | molecular_function | 1326
Transcript expression level evidence | fission_yeast_phenotype | 1370
expression microarray evidence | gene_ex | 1378
Inferred from Sequence Orthology | molecular_function | 1501
Inferred from Sequence Orthology | cellular_component | 2441
Inferred from Electronic Annotation | molecular_function | 2515
Inferred from Direct Assay | PSI-MOD | 2583
Inferred from Sequence Orthology | biological_process | 2956
Inferred from Mutant Phenotype | biological_process | 3636
experimental evidence | PSI-MOD | 8143
Inferred from Direct Assay | cellular_component | 10466
Cell growth assay | fission_yeast_phenotype | 13303
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 20412
Microscopy | fission_yeast_phenotype | 23062
(104 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Cell growth assay | fission_yeast_phenotype | 13303
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 324
Chromatography evidence | fission_yeast_phenotype | 26
Co-immunoprecipitation experiment | fission_yeast_phenotype | 230
competitive growth assay evidence | fission_yeast_phenotype | 497
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 92
Enzyme assay data | fission_yeast_phenotype | 1029
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2
experimental evidence | gene_ex | 20412
experimental evidence | PSI-MOD | 8143
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 1378
Flow cytometry data | fission_yeast_phenotype | 539
fusion protein localization evidence | gene_ex | 8
gel electrophoresis evidence | fission_yeast_phenotype | 912
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
Immunolocalization experiment data | fission_yeast_phenotype | 7
Inferred by Curator | biological_process | 910
Inferred by Curator | cellular_component | 343
Inferred by Curator | molecular_function | 141
Inferred from Direct Assay | biological_process | 648
Inferred from Direct Assay | subunit_composition | 3
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1276
Inferred from Direct Assay | PSI-MOD | 2583
Inferred from Direct Assay | cellular_component | 10466
Inferred from Direct Assay | sequence | 2
Inferred from Electronic Annotation | biological_process | 953
Inferred from Electronic Annotation | cellular_component | 1147
Inferred from Electronic Annotation | molecular_function | 2515
Inferred from Experiment | cellular_component | 28
Inferred from Experiment | molecular_function | 23
Inferred from Experiment | biological_process | 54
Inferred from Expression Pattern | biological_process | 75
Inferred from Genetic Interaction | molecular_function | 134
Inferred from Genetic Interaction | biological_process | 722
Inferred from Genetic Interaction | cellular_component | 58
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | fission_yeast_phenotype | 3
Inferred from Mutant Phenotype | cellular_component | 81
Inferred from Mutant Phenotype | molecular_function | 524
Inferred from Mutant Phenotype | biological_process | 3636
Inferred from Mutant Phenotype | sequence | 7
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | biological_process | 81
Inferred from Physical Interaction | molecular_function | 1326
Inferred from Physical Interaction | cellular_component | 101
Inferred from Physical Interaction | misc | 2
inferred from Reviewed Computational Analysis | cellular_component | 241
inferred from Reviewed Computational Analysis | molecular_function | 240
inferred from Reviewed Computational Analysis | biological_process | 24
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | molecular_function | 363
Inferred from Sequence Model | biological_process | 208
Inferred from Sequence Model | cellular_component | 49
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | cellular_component | 701
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Sequence or Structural Similarity | warning | 105
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | molecular_function | 565
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | biological_process | 745
Inferred from Sequence or Structural Similarity | sequence | 356
Inferred from Sequence Orthology | biological_process | 2956
Inferred from Sequence Orthology | cellular_component | 2441
Inferred from Sequence Orthology | molecular_function | 1501
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
Microscopy | fission_yeast_phenotype | 23062
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 244
Non-traceable Author Statement | biological_process | 671
Non-traceable Author Statement | cellular_component | 303
Northern assay evidence | gene_ex | 631
Northern assay evidence | fission_yeast_phenotype | 185
Other | fission_yeast_phenotype | 594
Other direct assay | fission_yeast_phenotype | 11
Particle size and count assay | fission_yeast_phenotype | 9
Plasmid maintenance assay evidence | fission_yeast_phenotype | 44
quantitative PCR | fission_yeast_phenotype | 149
quantitative PCR | gene_ex | 40
Reporter gene assay | fission_yeast_phenotype | 610
reporter gene assay evidence | gene_ex | 143
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51
RNA protection assay evidence | gene_ex | 15
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33
Substance quantification | fission_yeast_phenotype | 117
Substance quantification evidence | fission_yeast_phenotype | 542
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | cellular_component | 129
Traceable Author Statement | biological_process | 231
Traceable Author Statement | sequence | 2
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | molecular_function | 139
Traceable Author Statement | fission_yeast_phenotype | 1
Transcript expression level evidence | fission_yeast_phenotype | 1370
Two-hybrid | fission_yeast_phenotype | 47
Western blot assay | fission_yeast_phenotype | 1101
Western blot evidence | gene_ex | 217
Western blot evidence | fission_yeast_phenotype | 1
(104 rows)
total:
count
--------
174820
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
374 | PSI-MOD
880 | molecular_function
1258 | cellular_component
1744 | biological_process
7957 | PomBase annotation extension terms
13929 | fission_yeast_phenotype
(6 rows)
total
-------
26142
(1 row)