counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 4 | external_link 21 | ex_tools 27 | cat_act 32 | pathway 89 | m_f_g 146 | subunit_composition 231 | genome_org 299 | complementation 312 | misc 580 | disease_associated 839 | EC numbers 848 | name_description 945 | sequence 1612 | warning 1860 | PomBase family or domain 5145 | PomBase gene characterisation status 7017 | PomBase gene products 8992 | molecular_function 10917 | PSI-MOD 11914 | biological_process 16088 | cellular_component 24534 | species_dist 36618 | gene_ex 45748 | fission_yeast_phenotype (25 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Non-traceable Author Statement | biological_process | 671 Inferred from Sequence Orthology | biological_process | 2956 Inferred from Mutant Phenotype | biological_process | 3636 Inferred from Direct Assay | biological_process | 648 Inferred from Physical Interaction | biological_process | 81 Inferred by Curator | biological_process | 910 inferred from Reviewed Computational Analysis | biological_process | 24 Inferred from Sequence or Structural Similarity | biological_process | 745 Inferred from Expression Pattern | biological_process | 75 Traceable Author Statement | biological_process | 231 Inferred from Sequence Model | biological_process | 208 Inferred from Electronic Annotation | biological_process | 953 Inferred from Experiment | biological_process | 54 Inferred from Genetic Interaction | biological_process | 722 Inferred from Sequence Model | cellular_component | 49 Inferred from Sequence Orthology | cellular_component | 2441 Inferred from Direct Assay | cellular_component | 10466 Inferred from Sequence or Structural Similarity | cellular_component | 701 Inferred from Mutant Phenotype | cellular_component | 81 Inferred by Curator | cellular_component | 343 Inferred from Genetic Interaction | cellular_component | 58 Inferred from Electronic Annotation | cellular_component | 1147 Traceable Author Statement | cellular_component | 129 Inferred from Experiment | cellular_component | 28 Inferred from Physical Interaction | cellular_component | 101 inferred from Reviewed Computational Analysis | cellular_component | 241 Non-traceable Author Statement | cellular_component | 303 Non-traceable Author Statement | complementation | 1 Plasmid maintenance assay evidence | fission_yeast_phenotype | 44 Traceable Author Statement | fission_yeast_phenotype | 1 Microscopy | fission_yeast_phenotype | 23062 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 324 Flow cytometry data | fission_yeast_phenotype | 539 Two-hybrid | fission_yeast_phenotype | 47 Enzyme assay data | fission_yeast_phenotype | 1029 Co-immunoprecipitation experiment | fission_yeast_phenotype | 230 Western blot assay | fission_yeast_phenotype | 1101 Substance quantification evidence | fission_yeast_phenotype | 542 Other | fission_yeast_phenotype | 594 Cell growth assay | fission_yeast_phenotype | 13303 experimental phenotypic evidence | fission_yeast_phenotype | 493 Transcript expression level evidence | fission_yeast_phenotype | 1370 competitive growth assay evidence | fission_yeast_phenotype | 497 Chromatography evidence | fission_yeast_phenotype | 26 Substance quantification | fission_yeast_phenotype | 117 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 92 Western blot evidence | fission_yeast_phenotype | 1 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Immunolocalization experiment data | fission_yeast_phenotype | 7 Northern assay evidence | fission_yeast_phenotype | 185 quantitative PCR | fission_yeast_phenotype | 149 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 912 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Reporter gene assay | fission_yeast_phenotype | 610 Other direct assay | fission_yeast_phenotype | 11 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 RNA protection assay evidence | gene_ex | 15 immunofluorescence evidence | gene_ex | 6 quantitative PCR | gene_ex | 40 Northern assay evidence | gene_ex | 631 in situ hybridization assay evidence | gene_ex | 14 expression microarray evidence | gene_ex | 1378 fusion protein localization evidence | gene_ex | 8 mass spectrometry evidence | gene_ex | 13682 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 experimental evidence | gene_ex | 20412 Western blot evidence | gene_ex | 217 reporter gene assay evidence | gene_ex | 143 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | misc | 2 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Electronic Annotation | molecular_function | 2515 Inferred by Curator | molecular_function | 141 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence Model | molecular_function | 363 Inferred from Mutant Phenotype | molecular_function | 524 Non-traceable Author Statement | molecular_function | 244 Inferred from Direct Assay | molecular_function | 1276 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence or Structural Similarity | molecular_function | 565 Inferred from Sequence Orthology | molecular_function | 1501 Inferred from Genetic Interaction | molecular_function | 134 Traceable Author Statement | molecular_function | 139 Inferred from Physical Interaction | molecular_function | 1326 Inferred from Experiment | molecular_function | 23 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | PSI-MOD | 2583 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence Model | PSI-MOD | 2 Traceable Author Statement | PSI-MOD | 1 Inferred from Mutant Phenotype | sequence | 7 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | warning | 105 (104 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Traceable Author Statement | fission_yeast_phenotype | 1 Western blot evidence | fission_yeast_phenotype | 1 Non-traceable Author Statement | complementation | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | misc | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Key Residues | molecular_function | 1 Traceable Author Statement | sequence | 2 Inferred from Physical Interaction | misc | 2 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 Inferred from Direct Assay | sequence | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Immunolocalization experiment data | fission_yeast_phenotype | 7 Inferred from Mutant Phenotype | sequence | 7 fusion protein localization evidence | gene_ex | 8 Particle size and count assay | fission_yeast_phenotype | 9 Other direct assay | fission_yeast_phenotype | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Inferred from Experiment | molecular_function | 23 inferred from Reviewed Computational Analysis | biological_process | 24 Chromatography evidence | fission_yeast_phenotype | 26 Inferred from Experiment | cellular_component | 28 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 quantitative PCR | gene_ex | 40 Inferred from Sequence or Structural Similarity | m_f_g | 42 Plasmid maintenance assay evidence | fission_yeast_phenotype | 44 Two-hybrid | fission_yeast_phenotype | 47 Inferred from Sequence Model | cellular_component | 49 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Inferred from Experiment | biological_process | 54 Inferred from Genetic Interaction | cellular_component | 58 Inferred from Expression Pattern | biological_process | 75 Inferred from Physical Interaction | biological_process | 81 Inferred from Mutant Phenotype | cellular_component | 81 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 92 Inferred from Physical Interaction | cellular_component | 101 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 105 Substance quantification | fission_yeast_phenotype | 117 Traceable Author Statement | cellular_component | 129 Inferred from Genetic Interaction | molecular_function | 134 Traceable Author Statement | molecular_function | 139 Inferred by Curator | molecular_function | 141 reporter gene assay evidence | gene_ex | 143 quantitative PCR | fission_yeast_phenotype | 149 Northern assay evidence | fission_yeast_phenotype | 185 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Sequence Model | biological_process | 208 Western blot evidence | gene_ex | 217 Co-immunoprecipitation experiment | fission_yeast_phenotype | 230 Traceable Author Statement | biological_process | 231 inferred from Reviewed Computational Analysis | molecular_function | 240 inferred from Reviewed Computational Analysis | cellular_component | 241 Non-traceable Author Statement | molecular_function | 244 Non-traceable Author Statement | cellular_component | 303 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 324 Inferred by Curator | cellular_component | 343 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence Model | molecular_function | 363 experimental phenotypic evidence | fission_yeast_phenotype | 493 competitive growth assay evidence | fission_yeast_phenotype | 497 Inferred from Mutant Phenotype | molecular_function | 524 Flow cytometry data | fission_yeast_phenotype | 539 Substance quantification evidence | fission_yeast_phenotype | 542 Inferred from Sequence or Structural Similarity | molecular_function | 565 Other | fission_yeast_phenotype | 594 Reporter gene assay | fission_yeast_phenotype | 610 Northern assay evidence | gene_ex | 631 Inferred from Direct Assay | biological_process | 648 Non-traceable Author Statement | biological_process | 671 Inferred from Sequence or Structural Similarity | cellular_component | 701 Inferred from Genetic Interaction | biological_process | 722 Inferred from Sequence or Structural Similarity | biological_process | 745 Inferred by Curator | biological_process | 910 gel electrophoresis evidence | fission_yeast_phenotype | 912 Inferred from Electronic Annotation | biological_process | 953 Enzyme assay data | fission_yeast_phenotype | 1029 Western blot assay | fission_yeast_phenotype | 1101 Inferred from Electronic Annotation | cellular_component | 1147 Inferred from Direct Assay | molecular_function | 1276 Inferred from Physical Interaction | molecular_function | 1326 Transcript expression level evidence | fission_yeast_phenotype | 1370 expression microarray evidence | gene_ex | 1378 Inferred from Sequence Orthology | molecular_function | 1501 Inferred from Sequence Orthology | cellular_component | 2441 Inferred from Electronic Annotation | molecular_function | 2515 Inferred from Direct Assay | PSI-MOD | 2583 Inferred from Sequence Orthology | biological_process | 2956 Inferred from Mutant Phenotype | biological_process | 3636 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | cellular_component | 10466 Cell growth assay | fission_yeast_phenotype | 13303 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20412 Microscopy | fission_yeast_phenotype | 23062 (104 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 13303 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 324 Chromatography evidence | fission_yeast_phenotype | 26 Co-immunoprecipitation experiment | fission_yeast_phenotype | 230 competitive growth assay evidence | fission_yeast_phenotype | 497 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 92 Enzyme assay data | fission_yeast_phenotype | 1029 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 2 experimental evidence | gene_ex | 20412 experimental evidence | PSI-MOD | 8143 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1378 Flow cytometry data | fission_yeast_phenotype | 539 fusion protein localization evidence | gene_ex | 8 gel electrophoresis evidence | fission_yeast_phenotype | 912 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 7 Inferred by Curator | biological_process | 910 Inferred by Curator | cellular_component | 343 Inferred by Curator | molecular_function | 141 Inferred from Direct Assay | biological_process | 648 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1276 Inferred from Direct Assay | PSI-MOD | 2583 Inferred from Direct Assay | cellular_component | 10466 Inferred from Direct Assay | sequence | 2 Inferred from Electronic Annotation | biological_process | 953 Inferred from Electronic Annotation | cellular_component | 1147 Inferred from Electronic Annotation | molecular_function | 2515 Inferred from Experiment | cellular_component | 28 Inferred from Experiment | molecular_function | 23 Inferred from Experiment | biological_process | 54 Inferred from Expression Pattern | biological_process | 75 Inferred from Genetic Interaction | molecular_function | 134 Inferred from Genetic Interaction | biological_process | 722 Inferred from Genetic Interaction | cellular_component | 58 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | cellular_component | 81 Inferred from Mutant Phenotype | molecular_function | 524 Inferred from Mutant Phenotype | biological_process | 3636 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | biological_process | 81 Inferred from Physical Interaction | molecular_function | 1326 Inferred from Physical Interaction | cellular_component | 101 Inferred from Physical Interaction | misc | 2 inferred from Reviewed Computational Analysis | cellular_component | 241 inferred from Reviewed Computational Analysis | molecular_function | 240 inferred from Reviewed Computational Analysis | biological_process | 24 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | molecular_function | 363 Inferred from Sequence Model | biological_process | 208 Inferred from Sequence Model | cellular_component | 49 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | cellular_component | 701 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | molecular_function | 565 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | biological_process | 745 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence Orthology | biological_process | 2956 Inferred from Sequence Orthology | cellular_component | 2441 Inferred from Sequence Orthology | molecular_function | 1501 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 23062 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 244 Non-traceable Author Statement | biological_process | 671 Non-traceable Author Statement | cellular_component | 303 Northern assay evidence | gene_ex | 631 Northern assay evidence | fission_yeast_phenotype | 185 Other | fission_yeast_phenotype | 594 Other direct assay | fission_yeast_phenotype | 11 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 44 quantitative PCR | fission_yeast_phenotype | 149 quantitative PCR | gene_ex | 40 Reporter gene assay | fission_yeast_phenotype | 610 reporter gene assay evidence | gene_ex | 143 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 33 Substance quantification | fission_yeast_phenotype | 117 Substance quantification evidence | fission_yeast_phenotype | 542 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | cellular_component | 129 Traceable Author Statement | biological_process | 231 Traceable Author Statement | sequence | 2 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | molecular_function | 139 Traceable Author Statement | fission_yeast_phenotype | 1 Transcript expression level evidence | fission_yeast_phenotype | 1370 Two-hybrid | fission_yeast_phenotype | 47 Western blot assay | fission_yeast_phenotype | 1101 Western blot evidence | gene_ex | 217 Western blot evidence | fission_yeast_phenotype | 1 (104 rows) total: count -------- 174820 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 374 | PSI-MOD 880 | molecular_function 1258 | cellular_component 1744 | biological_process 7957 | PomBase annotation extension terms 13929 | fission_yeast_phenotype (6 rows) total ------- 26142 (1 row)