counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 4 | external_link 21 | ex_tools 27 | cat_act 32 | pathway 89 | m_f_g 147 | subunit_composition 231 | genome_org 314 | complementation 320 | misc 589 | disease_associated 839 | EC numbers 855 | name_description 945 | sequence 1611 | warning 1859 | PomBase family or domain 5145 | PomBase gene characterisation status 7017 | PomBase gene products 9045 | molecular_function 10974 | PSI-MOD 11618 | biological_process 16162 | cellular_component 24531 | species_dist 36721 | gene_ex 48714 | fission_yeast_phenotype (25 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Non-traceable Author Statement | biological_process | 730 Inferred from Sequence or Structural Similarity | biological_process | 728 Inferred from Mutant Phenotype | biological_process | 3581 inferred from Reviewed Computational Analysis | biological_process | 24 Inferred from Direct Assay | biological_process | 662 Inferred from Physical Interaction | biological_process | 81 Inferred from Experiment | biological_process | 59 Inferred from Genetic Interaction | biological_process | 705 Inferred from Sequence Orthology | biological_process | 2928 Inferred by Curator | biological_process | 922 Inferred from Expression Pattern | biological_process | 81 Inferred from Sequence Model | biological_process | 205 Inferred from Electronic Annotation | biological_process | 680 Traceable Author Statement | biological_process | 231 Inferred from Genomic Context | biological_process | 1 Inferred from Electronic Annotation | cellular_component | 1121 Inferred from Direct Assay | cellular_component | 10569 Inferred from Genetic Interaction | cellular_component | 55 Non-traceable Author Statement | cellular_component | 300 Inferred from Mutant Phenotype | cellular_component | 82 Inferred from Sequence Orthology | cellular_component | 2442 Inferred from Sequence or Structural Similarity | cellular_component | 700 Inferred from Sequence Model | cellular_component | 52 Inferred from Physical Interaction | cellular_component | 101 Inferred by Curator | cellular_component | 340 Inferred from Experiment | cellular_component | 31 inferred from Reviewed Computational Analysis | cellular_component | 241 Traceable Author Statement | cellular_component | 128 Non-traceable Author Statement | complementation | 1 Cell growth assay | fission_yeast_phenotype | 14490 Other direct assay | fission_yeast_phenotype | 11 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Western blot assay | fission_yeast_phenotype | 1228 Transcript expression level evidence | fission_yeast_phenotype | 1505 competitive growth assay evidence | fission_yeast_phenotype | 497 Chromatography evidence | fission_yeast_phenotype | 26 Western blot evidence | fission_yeast_phenotype | 1 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32 Immunolocalization experiment data | fission_yeast_phenotype | 7 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 981 Reporter gene assay | fission_yeast_phenotype | 780 Plasmid maintenance assay evidence | fission_yeast_phenotype | 50 Flow cytometry data | fission_yeast_phenotype | 641 Two-hybrid | fission_yeast_phenotype | 47 Enzyme assay data | fission_yeast_phenotype | 1060 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 398 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Microscopy | fission_yeast_phenotype | 24067 quantitative PCR | fission_yeast_phenotype | 149 Northern assay evidence | fission_yeast_phenotype | 126 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 94 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 Substance quantification | fission_yeast_phenotype | 117 experimental phenotypic evidence | fission_yeast_phenotype | 493 Other | fission_yeast_phenotype | 653 Substance quantification evidence | fission_yeast_phenotype | 581 Co-immunoprecipitation experiment | fission_yeast_phenotype | 250 quantitative PCR | gene_ex | 42 immunofluorescence evidence | gene_ex | 6 reporter gene assay evidence | gene_ex | 143 transcript expression level evidence | gene_ex | 9 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Western blot evidence | gene_ex | 243 RNA protection assay evidence | gene_ex | 15 in situ hybridization assay evidence | gene_ex | 14 Northern assay evidence | gene_ex | 696 expression microarray evidence | gene_ex | 1378 fusion protein localization evidence | gene_ex | 10 experimental evidence | gene_ex | 20412 mass spectrometry evidence | gene_ex | 13682 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 1381 Inferred from Key Residues | molecular_function | 1 Inferred from Electronic Annotation | molecular_function | 2494 Inferred from Genetic Interaction | molecular_function | 130 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred by Curator | molecular_function | 143 Inferred from Sequence or Structural Similarity | molecular_function | 559 Inferred from Sequence Orthology | molecular_function | 1498 Non-traceable Author Statement | molecular_function | 242 Inferred from Direct Assay | molecular_function | 1318 Inferred from Sequence Model | molecular_function | 360 Inferred from Mutant Phenotype | molecular_function | 520 Traceable Author Statement | molecular_function | 135 Inferred from Experiment | molecular_function | 24 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | PSI-MOD | 2641 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 (105 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | misc | 1 Western blot evidence | fission_yeast_phenotype | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Genomic Context | biological_process | 1 Inferred from Direct Assay | sequence | 2 Traceable Author Statement | sequence | 2 Inferred from Physical Interaction | misc | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Direct Assay | subunit_composition | 3 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Immunolocalization experiment data | fission_yeast_phenotype | 7 transcript expression level evidence | gene_ex | 9 Particle size and count assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 Other direct assay | fission_yeast_phenotype | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Inferred from Experiment | molecular_function | 24 inferred from Reviewed Computational Analysis | biological_process | 24 Chromatography evidence | fission_yeast_phenotype | 26 Inferred from Experiment | cellular_component | 31 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32 quantitative PCR | gene_ex | 42 Inferred from Sequence or Structural Similarity | m_f_g | 42 Two-hybrid | fission_yeast_phenotype | 47 Plasmid maintenance assay evidence | fission_yeast_phenotype | 50 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Inferred from Sequence Model | cellular_component | 52 Inferred from Genetic Interaction | cellular_component | 55 Inferred from Experiment | biological_process | 59 Inferred from Expression Pattern | biological_process | 81 Inferred from Physical Interaction | biological_process | 81 Inferred from Mutant Phenotype | cellular_component | 82 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 94 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Physical Interaction | cellular_component | 101 Inferred from Sequence or Structural Similarity | warning | 105 Substance quantification | fission_yeast_phenotype | 117 Northern assay evidence | fission_yeast_phenotype | 126 Traceable Author Statement | cellular_component | 128 Inferred from Genetic Interaction | molecular_function | 130 Traceable Author Statement | molecular_function | 135 Inferred by Curator | molecular_function | 143 reporter gene assay evidence | gene_ex | 143 quantitative PCR | fission_yeast_phenotype | 149 Inferred from Sequence Model | biological_process | 205 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Traceable Author Statement | biological_process | 231 inferred from Reviewed Computational Analysis | molecular_function | 240 inferred from Reviewed Computational Analysis | cellular_component | 241 Non-traceable Author Statement | molecular_function | 242 Western blot evidence | gene_ex | 243 Co-immunoprecipitation experiment | fission_yeast_phenotype | 250 Non-traceable Author Statement | cellular_component | 300 Inferred by Curator | cellular_component | 340 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence Model | molecular_function | 360 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 398 experimental phenotypic evidence | fission_yeast_phenotype | 493 competitive growth assay evidence | fission_yeast_phenotype | 497 Inferred from Mutant Phenotype | molecular_function | 520 Inferred from Sequence or Structural Similarity | molecular_function | 559 Substance quantification evidence | fission_yeast_phenotype | 581 Flow cytometry data | fission_yeast_phenotype | 641 Other | fission_yeast_phenotype | 653 Inferred from Direct Assay | biological_process | 662 Inferred from Electronic Annotation | biological_process | 680 Northern assay evidence | gene_ex | 696 Inferred from Sequence or Structural Similarity | cellular_component | 700 Inferred from Genetic Interaction | biological_process | 705 Inferred from Sequence or Structural Similarity | biological_process | 728 Non-traceable Author Statement | biological_process | 730 Reporter gene assay | fission_yeast_phenotype | 780 Inferred by Curator | biological_process | 922 gel electrophoresis evidence | fission_yeast_phenotype | 981 Enzyme assay data | fission_yeast_phenotype | 1060 Inferred from Electronic Annotation | cellular_component | 1121 Western blot assay | fission_yeast_phenotype | 1228 Inferred from Direct Assay | molecular_function | 1318 expression microarray evidence | gene_ex | 1378 Inferred from Physical Interaction | molecular_function | 1381 Inferred from Sequence Orthology | molecular_function | 1498 Transcript expression level evidence | fission_yeast_phenotype | 1505 Inferred from Sequence Orthology | cellular_component | 2442 Inferred from Electronic Annotation | molecular_function | 2494 Inferred from Direct Assay | PSI-MOD | 2641 Inferred from Sequence Orthology | biological_process | 2928 Inferred from Mutant Phenotype | biological_process | 3581 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | cellular_component | 10569 mass spectrometry evidence | gene_ex | 13682 Cell growth assay | fission_yeast_phenotype | 14490 experimental evidence | gene_ex | 20412 Microscopy | fission_yeast_phenotype | 24067 (105 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 14490 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 398 Chromatography evidence | fission_yeast_phenotype | 26 Co-immunoprecipitation experiment | fission_yeast_phenotype | 250 competitive growth assay evidence | fission_yeast_phenotype | 497 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 94 Enzyme assay data | fission_yeast_phenotype | 1060 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 experimental evidence | gene_ex | 20412 experimental evidence | PSI-MOD | 8143 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1378 Flow cytometry data | fission_yeast_phenotype | 641 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 981 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 7 Inferred by Curator | cellular_component | 340 Inferred by Curator | biological_process | 922 Inferred by Curator | molecular_function | 143 Inferred from Direct Assay | PSI-MOD | 2641 Inferred from Direct Assay | cellular_component | 10569 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | biological_process | 662 Inferred from Direct Assay | molecular_function | 1318 Inferred from Electronic Annotation | molecular_function | 2494 Inferred from Electronic Annotation | biological_process | 680 Inferred from Electronic Annotation | cellular_component | 1121 Inferred from Experiment | cellular_component | 31 Inferred from Experiment | molecular_function | 24 Inferred from Experiment | biological_process | 59 Inferred from Expression Pattern | biological_process | 81 Inferred from Genetic Interaction | cellular_component | 55 Inferred from Genetic Interaction | molecular_function | 130 Inferred from Genetic Interaction | biological_process | 705 Inferred from Genomic Context | biological_process | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | cellular_component | 82 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | biological_process | 3581 Inferred from Mutant Phenotype | molecular_function | 520 Inferred from Physical Interaction | molecular_function | 1381 Inferred from Physical Interaction | cellular_component | 101 Inferred from Physical Interaction | biological_process | 81 Inferred from Physical Interaction | misc | 2 inferred from Reviewed Computational Analysis | cellular_component | 241 inferred from Reviewed Computational Analysis | biological_process | 24 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence Model | molecular_function | 360 Inferred from Sequence Model | biological_process | 205 Inferred from Sequence Model | cellular_component | 52 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence or Structural Similarity | cellular_component | 700 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | molecular_function | 559 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | biological_process | 728 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence Orthology | biological_process | 2928 Inferred from Sequence Orthology | cellular_component | 2442 Inferred from Sequence Orthology | molecular_function | 1498 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 24067 Non-traceable Author Statement | biological_process | 730 Non-traceable Author Statement | cellular_component | 300 Non-traceable Author Statement | molecular_function | 242 Non-traceable Author Statement | complementation | 1 Northern assay evidence | fission_yeast_phenotype | 126 Northern assay evidence | gene_ex | 696 Other | fission_yeast_phenotype | 653 Other direct assay | fission_yeast_phenotype | 11 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 50 quantitative PCR | fission_yeast_phenotype | 149 quantitative PCR | gene_ex | 42 Reporter gene assay | fission_yeast_phenotype | 780 reporter gene assay evidence | gene_ex | 143 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32 Substance quantification | fission_yeast_phenotype | 117 Substance quantification evidence | fission_yeast_phenotype | 581 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | molecular_function | 135 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | biological_process | 231 Traceable Author Statement | sequence | 2 Traceable Author Statement | cellular_component | 128 transcript expression level evidence | gene_ex | 9 Transcript expression level evidence | fission_yeast_phenotype | 1505 Two-hybrid | fission_yeast_phenotype | 47 Western blot assay | fission_yeast_phenotype | 1228 Western blot evidence | fission_yeast_phenotype | 1 Western blot evidence | gene_ex | 243 (105 rows) total: count -------- 177812 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 405 | PSI-MOD 966 | molecular_function 1350 | cellular_component 1809 | biological_process 9118 | PomBase annotation extension terms 15821 | fission_yeast_phenotype (6 rows) total ------- 29469 (1 row)