counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 4 | external_link 21 | ex_tools 27 | cat_act 32 | pathway 89 | m_f_g 148 | subunit_composition 231 | genome_org 316 | complementation 320 | misc 589 | disease_associated 839 | EC numbers 856 | name_description 945 | sequence 1611 | warning 1860 | PomBase family or domain 5145 | PomBase gene characterisation status 7017 | PomBase gene products 9036 | molecular_function 11015 | PSI-MOD 11109 | biological_process 16143 | cellular_component 24527 | species_dist 36745 | gene_ex 49580 | fission_yeast_phenotype (25 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Non-traceable Author Statement | biological_process | 746 Inferred from Sequence or Structural Similarity | biological_process | 669 Inferred from Mutant Phenotype | biological_process | 3528 inferred from Reviewed Computational Analysis | biological_process | 24 Inferred from Direct Assay | biological_process | 579 Inferred from Physical Interaction | biological_process | 81 Inferred from Experiment | biological_process | 52 Inferred from Genetic Interaction | biological_process | 661 Inferred from Sequence Orthology | biological_process | 2716 Inferred by Curator | biological_process | 898 Inferred from Expression Pattern | biological_process | 82 Inferred from Sequence Model | biological_process | 160 Inferred from Electronic Annotation | biological_process | 706 Traceable Author Statement | biological_process | 206 Inferred from Genomic Context | biological_process | 1 Inferred from Electronic Annotation | cellular_component | 1123 Inferred from Direct Assay | cellular_component | 10648 Inferred from Genetic Interaction | cellular_component | 50 Non-traceable Author Statement | cellular_component | 303 Inferred from Mutant Phenotype | cellular_component | 43 Inferred from Sequence Orthology | cellular_component | 2410 Inferred from Sequence or Structural Similarity | cellular_component | 686 Inferred from Sequence Model | cellular_component | 52 Inferred from Physical Interaction | cellular_component | 100 Inferred by Curator | cellular_component | 328 Inferred from Experiment | cellular_component | 31 inferred from Reviewed Computational Analysis | cellular_component | 244 Traceable Author Statement | cellular_component | 125 Non-traceable Author Statement | complementation | 1 Cell growth assay | fission_yeast_phenotype | 14819 Other direct assay | fission_yeast_phenotype | 11 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Western blot assay | fission_yeast_phenotype | 1278 Transcript expression level evidence | fission_yeast_phenotype | 1550 competitive growth assay evidence | fission_yeast_phenotype | 497 Chromatography evidence | fission_yeast_phenotype | 26 Western blot evidence | fission_yeast_phenotype | 1 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32 Immunolocalization experiment data | fission_yeast_phenotype | 7 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 1002 Reporter gene assay | fission_yeast_phenotype | 789 Plasmid maintenance assay evidence | fission_yeast_phenotype | 50 Flow cytometry data | fission_yeast_phenotype | 656 Two-hybrid | fission_yeast_phenotype | 47 Enzyme assay data | fission_yeast_phenotype | 1084 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 419 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Microscopy | fission_yeast_phenotype | 24335 quantitative PCR | fission_yeast_phenotype | 156 Northern assay evidence | fission_yeast_phenotype | 184 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 94 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 Substance quantification | fission_yeast_phenotype | 117 experimental phenotypic evidence | fission_yeast_phenotype | 493 Other | fission_yeast_phenotype | 661 Substance quantification evidence | fission_yeast_phenotype | 593 Co-immunoprecipitation experiment | fission_yeast_phenotype | 252 quantitative PCR | gene_ex | 50 immunofluorescence evidence | gene_ex | 6 reporter gene assay evidence | gene_ex | 143 transcript expression level evidence | gene_ex | 9 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Western blot evidence | gene_ex | 255 RNA protection assay evidence | gene_ex | 15 in situ hybridization assay evidence | gene_ex | 14 Northern assay evidence | gene_ex | 700 expression microarray evidence | gene_ex | 1378 fusion protein localization evidence | gene_ex | 10 experimental evidence | gene_ex | 20412 mass spectrometry evidence | gene_ex | 13682 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 1382 Inferred from Key Residues | molecular_function | 1 Inferred from Electronic Annotation | molecular_function | 2482 Inferred from Genetic Interaction | molecular_function | 130 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred by Curator | molecular_function | 143 Inferred from Sequence or Structural Similarity | molecular_function | 557 Inferred from Sequence Orthology | molecular_function | 1501 Non-traceable Author Statement | molecular_function | 242 Inferred from Direct Assay | molecular_function | 1326 Inferred from Sequence Model | molecular_function | 361 Inferred from Mutant Phenotype | molecular_function | 517 Traceable Author Statement | molecular_function | 130 Inferred from Experiment | molecular_function | 24 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | PSI-MOD | 2683 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 105 (105 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | misc | 1 Western blot evidence | fission_yeast_phenotype | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Genomic Context | biological_process | 1 Inferred from Direct Assay | sequence | 2 Traceable Author Statement | sequence | 2 Inferred from Physical Interaction | misc | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Sequence Model | PSI-MOD | 2 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Immunolocalization experiment data | fission_yeast_phenotype | 7 transcript expression level evidence | gene_ex | 9 Particle size and count assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 Other direct assay | fission_yeast_phenotype | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Inferred from Experiment | molecular_function | 24 inferred from Reviewed Computational Analysis | biological_process | 24 Chromatography evidence | fission_yeast_phenotype | 26 Inferred from Experiment | cellular_component | 31 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Mutant Phenotype | cellular_component | 43 Two-hybrid | fission_yeast_phenotype | 47 Inferred from Genetic Interaction | cellular_component | 50 Plasmid maintenance assay evidence | fission_yeast_phenotype | 50 quantitative PCR | gene_ex | 50 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Inferred from Experiment | biological_process | 52 Inferred from Sequence Model | cellular_component | 52 Inferred from Physical Interaction | biological_process | 81 Inferred from Expression Pattern | biological_process | 82 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 94 Inferred from Physical Interaction | cellular_component | 100 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 105 Substance quantification | fission_yeast_phenotype | 117 Traceable Author Statement | cellular_component | 125 Traceable Author Statement | molecular_function | 130 Inferred from Genetic Interaction | molecular_function | 130 Inferred by Curator | molecular_function | 143 reporter gene assay evidence | gene_ex | 143 quantitative PCR | fission_yeast_phenotype | 156 Inferred from Sequence Model | biological_process | 160 Northern assay evidence | fission_yeast_phenotype | 184 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Traceable Author Statement | biological_process | 206 inferred from Reviewed Computational Analysis | molecular_function | 240 Non-traceable Author Statement | molecular_function | 242 inferred from Reviewed Computational Analysis | cellular_component | 244 Co-immunoprecipitation experiment | fission_yeast_phenotype | 252 Western blot evidence | gene_ex | 255 Non-traceable Author Statement | cellular_component | 303 Inferred by Curator | cellular_component | 328 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence Model | molecular_function | 361 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 419 experimental phenotypic evidence | fission_yeast_phenotype | 493 competitive growth assay evidence | fission_yeast_phenotype | 497 Inferred from Mutant Phenotype | molecular_function | 517 Inferred from Sequence or Structural Similarity | molecular_function | 557 Inferred from Direct Assay | biological_process | 579 Substance quantification evidence | fission_yeast_phenotype | 593 Flow cytometry data | fission_yeast_phenotype | 656 Inferred from Genetic Interaction | biological_process | 661 Other | fission_yeast_phenotype | 661 Inferred from Sequence or Structural Similarity | biological_process | 669 Inferred from Sequence or Structural Similarity | cellular_component | 686 Northern assay evidence | gene_ex | 700 Inferred from Electronic Annotation | biological_process | 706 Non-traceable Author Statement | biological_process | 746 Reporter gene assay | fission_yeast_phenotype | 789 Inferred by Curator | biological_process | 898 gel electrophoresis evidence | fission_yeast_phenotype | 1002 Enzyme assay data | fission_yeast_phenotype | 1084 Inferred from Electronic Annotation | cellular_component | 1123 Western blot assay | fission_yeast_phenotype | 1278 Inferred from Direct Assay | molecular_function | 1326 expression microarray evidence | gene_ex | 1378 Inferred from Physical Interaction | molecular_function | 1382 Inferred from Sequence Orthology | molecular_function | 1501 Transcript expression level evidence | fission_yeast_phenotype | 1550 Inferred from Sequence Orthology | cellular_component | 2410 Inferred from Electronic Annotation | molecular_function | 2482 Inferred from Direct Assay | PSI-MOD | 2683 Inferred from Sequence Orthology | biological_process | 2716 Inferred from Mutant Phenotype | biological_process | 3528 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | cellular_component | 10648 mass spectrometry evidence | gene_ex | 13682 Cell growth assay | fission_yeast_phenotype | 14819 experimental evidence | gene_ex | 20412 Microscopy | fission_yeast_phenotype | 24335 (105 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 14819 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 419 Chromatography evidence | fission_yeast_phenotype | 26 Co-immunoprecipitation experiment | fission_yeast_phenotype | 252 competitive growth assay evidence | fission_yeast_phenotype | 497 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 94 Enzyme assay data | fission_yeast_phenotype | 1084 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 experimental evidence | gene_ex | 20412 experimental evidence | PSI-MOD | 8143 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1378 Flow cytometry data | fission_yeast_phenotype | 656 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 1002 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 7 Inferred by Curator | cellular_component | 328 Inferred by Curator | biological_process | 898 Inferred by Curator | molecular_function | 143 Inferred from Direct Assay | PSI-MOD | 2683 Inferred from Direct Assay | cellular_component | 10648 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | biological_process | 579 Inferred from Direct Assay | molecular_function | 1326 Inferred from Electronic Annotation | molecular_function | 2482 Inferred from Electronic Annotation | biological_process | 706 Inferred from Electronic Annotation | cellular_component | 1123 Inferred from Experiment | cellular_component | 31 Inferred from Experiment | molecular_function | 24 Inferred from Experiment | biological_process | 52 Inferred from Expression Pattern | biological_process | 82 Inferred from Genetic Interaction | cellular_component | 50 Inferred from Genetic Interaction | molecular_function | 130 Inferred from Genetic Interaction | biological_process | 661 Inferred from Genomic Context | biological_process | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | cellular_component | 43 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | biological_process | 3528 Inferred from Mutant Phenotype | molecular_function | 517 Inferred from Physical Interaction | molecular_function | 1382 Inferred from Physical Interaction | cellular_component | 100 Inferred from Physical Interaction | biological_process | 81 Inferred from Physical Interaction | misc | 2 inferred from Reviewed Computational Analysis | cellular_component | 244 inferred from Reviewed Computational Analysis | biological_process | 24 inferred from Reviewed Computational Analysis | molecular_function | 240 Inferred from Sequence Model | molecular_function | 361 Inferred from Sequence Model | biological_process | 160 Inferred from Sequence Model | cellular_component | 52 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 105 Inferred from Sequence or Structural Similarity | cellular_component | 686 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | molecular_function | 557 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | biological_process | 669 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence Orthology | biological_process | 2716 Inferred from Sequence Orthology | cellular_component | 2410 Inferred from Sequence Orthology | molecular_function | 1501 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 24335 Non-traceable Author Statement | biological_process | 746 Non-traceable Author Statement | cellular_component | 303 Non-traceable Author Statement | molecular_function | 242 Non-traceable Author Statement | complementation | 1 Northern assay evidence | fission_yeast_phenotype | 184 Northern assay evidence | gene_ex | 700 Other | fission_yeast_phenotype | 661 Other direct assay | fission_yeast_phenotype | 11 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 50 quantitative PCR | fission_yeast_phenotype | 156 quantitative PCR | gene_ex | 50 Reporter gene assay | fission_yeast_phenotype | 789 reporter gene assay evidence | gene_ex | 143 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32 Substance quantification | fission_yeast_phenotype | 117 Substance quantification evidence | fission_yeast_phenotype | 593 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | molecular_function | 130 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | biological_process | 206 Traceable Author Statement | sequence | 2 Traceable Author Statement | cellular_component | 125 transcript expression level evidence | gene_ex | 9 Transcript expression level evidence | fission_yeast_phenotype | 1550 Two-hybrid | fission_yeast_phenotype | 47 Western blot assay | fission_yeast_phenotype | 1278 Western blot evidence | fission_yeast_phenotype | 1 Western blot evidence | gene_ex | 255 (105 rows) total: count -------- 178207 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 405 | PSI-MOD 980 | molecular_function 1416 | cellular_component 1857 | biological_process 9586 | PomBase annotation extension terms 16339 | fission_yeast_phenotype (6 rows) total ------- 30583 (1 row)