counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 4 | external_link 21 | ex_tools 27 | cat_act 32 | pathway 89 | m_f_g 153 | subunit_composition 232 | genome_org 335 | complementation 345 | misc 596 | disease_associated 839 | EC numbers 861 | name_description 945 | sequence 1610 | warning 1863 | PomBase family or domain 5145 | PomBase gene characterisation status 7015 | PomBase gene products 9075 | molecular_function 11052 | PSI-MOD 11315 | biological_process 16290 | cellular_component 24528 | species_dist 36851 | gene_ex 51111 | fission_yeast_phenotype (25 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Traceable Author Statement | biological_process | 204 Inferred from Genomic Context | biological_process | 1 Inferred by Curator | biological_process | 1143 Inferred from Mutant Phenotype | biological_process | 3553 Non-traceable Author Statement | biological_process | 692 Inferred from Physical Interaction | biological_process | 94 Inferred from Experiment | biological_process | 54 Inferred from Genetic Interaction | biological_process | 667 Inferred from Sequence Orthology | biological_process | 2710 Inferred from Electronic Annotation | biological_process | 710 Inferred from Expression Pattern | biological_process | 68 Inferred from Direct Assay | biological_process | 578 Inferred from Sequence or Structural Similarity | biological_process | 684 Inferred from Sequence Model | biological_process | 157 Non-traceable Author Statement | cellular_component | 302 Inferred from Sequence Model | cellular_component | 52 Inferred from Sequence Orthology | cellular_component | 2406 Traceable Author Statement | cellular_component | 125 Inferred from Sequence or Structural Similarity | cellular_component | 684 Inferred from Direct Assay | cellular_component | 10800 Inferred from Electronic Annotation | cellular_component | 1118 Inferred from Mutant Phenotype | cellular_component | 46 Inferred from Experiment | cellular_component | 31 Inferred by Curator | cellular_component | 567 Inferred from Genetic Interaction | cellular_component | 51 inferred from Reviewed Computational Analysis | cellular_component | 4 Inferred from Physical Interaction | cellular_component | 104 Non-traceable Author Statement | complementation | 1 Co-immunoprecipitation experiment | fission_yeast_phenotype | 258 Northern assay evidence | fission_yeast_phenotype | 125 Flow cytometry data | fission_yeast_phenotype | 672 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 439 Two-hybrid | fission_yeast_phenotype | 47 Enzyme assay data | fission_yeast_phenotype | 1187 Western blot assay | fission_yeast_phenotype | 1380 Substance quantification evidence | fission_yeast_phenotype | 614 Other | fission_yeast_phenotype | 723 Cell growth assay | fission_yeast_phenotype | 15398 experimental phenotypic evidence | fission_yeast_phenotype | 493 Transcript expression level evidence | fission_yeast_phenotype | 1701 competitive growth assay evidence | fission_yeast_phenotype | 497 Chromatography evidence | fission_yeast_phenotype | 26 Substance quantification | fission_yeast_phenotype | 117 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 94 Western blot evidence | fission_yeast_phenotype | 1 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32 Immunolocalization experiment data | fission_yeast_phenotype | 8 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 1040 Other direct assay | fission_yeast_phenotype | 11 Reporter gene assay | fission_yeast_phenotype | 795 quantitative PCR | fission_yeast_phenotype | 156 Microscopy | fission_yeast_phenotype | 24827 Plasmid maintenance assay evidence | fission_yeast_phenotype | 54 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 quantitative PCR | gene_ex | 56 Northern assay evidence | gene_ex | 724 RNA protection assay evidence | gene_ex | 15 in situ hybridization assay evidence | gene_ex | 14 expression microarray evidence | gene_ex | 1438 mass spectrometry evidence | gene_ex | 13682 transcript expression level evidence | gene_ex | 10 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 experimental evidence | gene_ex | 20406 Western blot evidence | gene_ex | 276 reporter gene assay evidence | gene_ex | 143 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred by Curator | molecular_function | 143 Inferred from Sequence Orthology | molecular_function | 1499 Inferred from Sequence or Structural Similarity | molecular_function | 554 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence Model | molecular_function | 601 Inferred from Direct Assay | molecular_function | 1373 Non-traceable Author Statement | molecular_function | 241 Inferred from Electronic Annotation | molecular_function | 2480 Inferred from Mutant Phenotype | molecular_function | 509 Inferred from Genetic Interaction | molecular_function | 129 Traceable Author Statement | molecular_function | 126 Inferred from Physical Interaction | molecular_function | 1395 Inferred from Experiment | molecular_function | 24 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Direct Assay | PSI-MOD | 2724 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8143 Inferred from Sequence or Structural Similarity | sequence | 356 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | warning | 103 (103 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Genomic Context | biological_process | 1 Inferred from Key Residues | molecular_function | 1 Western blot evidence | fission_yeast_phenotype | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Physical Interaction | misc | 2 Inferred from Sequence Model | PSI-MOD | 2 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 inferred from Reviewed Computational Analysis | cellular_component | 4 Traceable Author Statement | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Mutant Phenotype | sequence | 7 Immunolocalization experiment data | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 transcript expression level evidence | gene_ex | 10 Other direct assay | fission_yeast_phenotype | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Inferred from Experiment | molecular_function | 24 Chromatography evidence | fission_yeast_phenotype | 26 Inferred from Experiment | cellular_component | 31 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Mutant Phenotype | cellular_component | 46 Two-hybrid | fission_yeast_phenotype | 47 Inferred from Genetic Interaction | cellular_component | 51 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Inferred from Sequence Model | cellular_component | 52 Inferred from Experiment | biological_process | 54 Plasmid maintenance assay evidence | fission_yeast_phenotype | 54 quantitative PCR | gene_ex | 56 Inferred from Expression Pattern | biological_process | 68 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 94 Inferred from Physical Interaction | biological_process | 94 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 103 Inferred from Physical Interaction | cellular_component | 104 Substance quantification | fission_yeast_phenotype | 117 Traceable Author Statement | cellular_component | 125 Northern assay evidence | fission_yeast_phenotype | 125 Traceable Author Statement | molecular_function | 126 Inferred from Genetic Interaction | molecular_function | 129 reporter gene assay evidence | gene_ex | 143 Inferred by Curator | molecular_function | 143 quantitative PCR | fission_yeast_phenotype | 156 Inferred from Sequence Model | biological_process | 157 Traceable Author Statement | biological_process | 204 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Non-traceable Author Statement | molecular_function | 241 Co-immunoprecipitation experiment | fission_yeast_phenotype | 258 Western blot evidence | gene_ex | 276 Non-traceable Author Statement | cellular_component | 302 Inferred from Sequence or Structural Similarity | sequence | 356 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 439 experimental phenotypic evidence | fission_yeast_phenotype | 493 competitive growth assay evidence | fission_yeast_phenotype | 497 Inferred from Mutant Phenotype | molecular_function | 509 Inferred from Sequence or Structural Similarity | molecular_function | 554 Inferred by Curator | cellular_component | 567 Inferred from Direct Assay | biological_process | 578 Inferred from Sequence Model | molecular_function | 601 Substance quantification evidence | fission_yeast_phenotype | 614 Inferred from Genetic Interaction | biological_process | 667 Flow cytometry data | fission_yeast_phenotype | 672 Inferred from Sequence or Structural Similarity | cellular_component | 684 Inferred from Sequence or Structural Similarity | biological_process | 684 Non-traceable Author Statement | biological_process | 692 Inferred from Electronic Annotation | biological_process | 710 Other | fission_yeast_phenotype | 723 Northern assay evidence | gene_ex | 724 Reporter gene assay | fission_yeast_phenotype | 795 gel electrophoresis evidence | fission_yeast_phenotype | 1040 Inferred from Electronic Annotation | cellular_component | 1118 Inferred by Curator | biological_process | 1143 Enzyme assay data | fission_yeast_phenotype | 1187 Inferred from Direct Assay | molecular_function | 1373 Western blot assay | fission_yeast_phenotype | 1380 Inferred from Physical Interaction | molecular_function | 1395 expression microarray evidence | gene_ex | 1438 Inferred from Sequence Orthology | molecular_function | 1499 Transcript expression level evidence | fission_yeast_phenotype | 1701 Inferred from Sequence Orthology | cellular_component | 2406 Inferred from Electronic Annotation | molecular_function | 2480 Inferred from Sequence Orthology | biological_process | 2710 Inferred from Direct Assay | PSI-MOD | 2724 Inferred from Mutant Phenotype | biological_process | 3553 experimental evidence | PSI-MOD | 8143 Inferred from Direct Assay | cellular_component | 10800 mass spectrometry evidence | gene_ex | 13682 Cell growth assay | fission_yeast_phenotype | 15398 experimental evidence | gene_ex | 20406 Microscopy | fission_yeast_phenotype | 24827 (103 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 15398 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 439 Chromatography evidence | fission_yeast_phenotype | 26 Co-immunoprecipitation experiment | fission_yeast_phenotype | 258 competitive growth assay evidence | fission_yeast_phenotype | 497 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 94 Enzyme assay data | fission_yeast_phenotype | 1187 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 experimental evidence | gene_ex | 20406 experimental evidence | PSI-MOD | 8143 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1438 Flow cytometry data | fission_yeast_phenotype | 672 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 1040 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 8 Inferred by Curator | molecular_function | 143 Inferred by Curator | biological_process | 1143 Inferred by Curator | cellular_component | 567 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | biological_process | 578 Inferred from Direct Assay | cellular_component | 10800 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | molecular_function | 1373 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | PSI-MOD | 2724 Inferred from Electronic Annotation | biological_process | 710 Inferred from Electronic Annotation | molecular_function | 2480 Inferred from Electronic Annotation | cellular_component | 1118 Inferred from Experiment | cellular_component | 31 Inferred from Experiment | molecular_function | 24 Inferred from Experiment | biological_process | 54 Inferred from Expression Pattern | biological_process | 68 Inferred from Genetic Interaction | molecular_function | 129 Inferred from Genetic Interaction | cellular_component | 51 Inferred from Genetic Interaction | biological_process | 667 Inferred from Genomic Context | biological_process | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 509 Inferred from Mutant Phenotype | biological_process | 3553 Inferred from Mutant Phenotype | cellular_component | 46 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Physical Interaction | molecular_function | 1395 Inferred from Physical Interaction | biological_process | 94 Inferred from Physical Interaction | cellular_component | 104 Inferred from Physical Interaction | misc | 2 inferred from Reviewed Computational Analysis | cellular_component | 4 Inferred from Sequence Model | molecular_function | 601 Inferred from Sequence Model | cellular_component | 52 Inferred from Sequence Model | biological_process | 157 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | warning | 103 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | cellular_component | 684 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | molecular_function | 554 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | biological_process | 684 Inferred from Sequence Orthology | molecular_function | 1499 Inferred from Sequence Orthology | biological_process | 2710 Inferred from Sequence Orthology | cellular_component | 2406 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 24827 Non-traceable Author Statement | molecular_function | 241 Non-traceable Author Statement | biological_process | 692 Non-traceable Author Statement | cellular_component | 302 Non-traceable Author Statement | complementation | 1 Northern assay evidence | gene_ex | 724 Northern assay evidence | fission_yeast_phenotype | 125 Other | fission_yeast_phenotype | 723 Other direct assay | fission_yeast_phenotype | 11 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 54 quantitative PCR | gene_ex | 56 quantitative PCR | fission_yeast_phenotype | 156 Reporter gene assay | fission_yeast_phenotype | 795 reporter gene assay evidence | gene_ex | 143 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32 Substance quantification | fission_yeast_phenotype | 117 Substance quantification evidence | fission_yeast_phenotype | 614 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | molecular_function | 126 Traceable Author Statement | cellular_component | 125 Traceable Author Statement | sequence | 2 Traceable Author Statement | biological_process | 204 Traceable Author Statement | PomBase family or domain | 5 transcript expression level evidence | gene_ex | 10 Transcript expression level evidence | fission_yeast_phenotype | 1701 Two-hybrid | fission_yeast_phenotype | 47 Western blot assay | fission_yeast_phenotype | 1380 Western blot evidence | fission_yeast_phenotype | 1 Western blot evidence | gene_ex | 276 (103 rows) total: count -------- 180336 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 412 | PSI-MOD 1038 | molecular_function 1508 | cellular_component 1950 | biological_process 10224 | PomBase annotation extension terms 17447 | fission_yeast_phenotype (6 rows) total ------- 32579 (1 row)