counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 4 | external_link 21 | ex_tools 27 | cat_act 32 | pathway 89 | m_f_g 157 | subunit_composition 232 | genome_org 344 | complementation 349 | misc 839 | EC numbers 870 | name_description 948 | sequence 1025 | disease_associated 1608 | warning 1860 | PomBase family or domain 5137 | PomBase gene characterisation status 6996 | PomBase gene products 10650 | molecular_function 11201 | biological_process 12840 | PSI-MOD 16447 | cellular_component 24535 | species_dist 36895 | gene_ex 54242 | fission_yeast_phenotype (25 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence Orthology | biological_process | 2731 Non-traceable Author Statement | biological_process | 529 Inferred from Genomic Context | biological_process | 1 Inferred from Mutant Phenotype | biological_process | 3575 Inferred from Sequence or Structural Similarity | biological_process | 665 Inferred from Direct Assay | biological_process | 615 Inferred from Physical Interaction | biological_process | 95 Inferred from Experiment | biological_process | 57 Inferred from Genetic Interaction | biological_process | 668 Inferred from Sequence Model | biological_process | 156 Inferred by Curator | biological_process | 1141 Inferred from Expression Pattern | biological_process | 61 Inferred from Electronic Annotation | biological_process | 712 Traceable Author Statement | biological_process | 195 Inferred from Sequence Orthology | cellular_component | 2420 Inferred from Genetic Interaction | cellular_component | 50 Inferred from Direct Assay | cellular_component | 10914 Non-traceable Author Statement | cellular_component | 297 Inferred from Mutant Phenotype | cellular_component | 67 Inferred from Electronic Annotation | cellular_component | 1121 Inferred from Sequence or Structural Similarity | cellular_component | 671 Inferred from Sequence Model | cellular_component | 52 Inferred from Physical Interaction | cellular_component | 129 Inferred from Experiment | cellular_component | 34 Inferred by Curator | cellular_component | 567 Traceable Author Statement | cellular_component | 121 inferred from Reviewed Computational Analysis | cellular_component | 4 Non-traceable Author Statement | complementation | 1 Cell growth assay | fission_yeast_phenotype | 16881 Other direct assay | fission_yeast_phenotype | 9 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Western blot assay | fission_yeast_phenotype | 1683 Transcript expression level evidence | fission_yeast_phenotype | 1889 competitive growth assay evidence | fission_yeast_phenotype | 497 Chromatography evidence | fission_yeast_phenotype | 26 Western blot evidence | fission_yeast_phenotype | 1 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32 Immunolocalization experiment data | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 1110 Reporter gene assay | fission_yeast_phenotype | 887 Plasmid maintenance assay evidence | fission_yeast_phenotype | 58 Flow cytometry data | fission_yeast_phenotype | 773 Enzyme assay data | fission_yeast_phenotype | 1231 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 500 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Microscopy | fission_yeast_phenotype | 25513 quantitative PCR | fission_yeast_phenotype | 158 Northern assay evidence | fission_yeast_phenotype | 125 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 97 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 Substance quantification | fission_yeast_phenotype | 117 experimental phenotypic evidence | fission_yeast_phenotype | 493 Other | fission_yeast_phenotype | 829 Substance quantification evidence | fission_yeast_phenotype | 642 Co-immunoprecipitation experiment | fission_yeast_phenotype | 283 in situ hybridization assay evidence | gene_ex | 14 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 reporter gene assay evidence | gene_ex | 143 transcript expression level evidence | gene_ex | 10 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Western blot evidence | gene_ex | 333 RNA protection assay evidence | gene_ex | 15 mass spectrometry evidence | gene_ex | 13682 Northern assay evidence | gene_ex | 752 experimental evidence | gene_ex | 20360 quantitative PCR | gene_ex | 59 expression microarray evidence | gene_ex | 1438 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | molecular_function | 1408 Inferred from Key Residues | molecular_function | 1 Inferred from Electronic Annotation | molecular_function | 2496 Inferred from Sequence or Structural Similarity | molecular_function | 538 Inferred from Genetic Interaction | molecular_function | 127 Inferred by Curator | molecular_function | 142 Inferred from Direct Assay | molecular_function | 1380 Inferred from Sequence Orthology | molecular_function | 1512 Non-traceable Author Statement | molecular_function | 239 Inferred from Sequence Model | molecular_function | 601 Inferred from Mutant Phenotype | molecular_function | 2053 Traceable Author Statement | molecular_function | 126 Inferred from Experiment | molecular_function | 27 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence Model | PSI-MOD | 2 Traceable Author Statement | PSI-MOD | 1 mass spectrometry evidence | PSI-MOD | 1086 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | PSI-MOD | 3432 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 7 Traceable Author Statement | sequence | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | warning | 102 (104 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | misc | 1 Western blot evidence | fission_yeast_phenotype | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Genomic Context | biological_process | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Direct Assay | subunit_composition | 3 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 Inferred from Mutant Phenotype | misc | 4 inferred from Reviewed Computational Analysis | cellular_component | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Immunolocalization experiment data | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 9 Other direct assay | fission_yeast_phenotype | 9 transcript expression level evidence | gene_ex | 10 fusion protein localization evidence | gene_ex | 10 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Chromatography evidence | fission_yeast_phenotype | 26 Inferred from Experiment | molecular_function | 27 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32 Inferred from Experiment | cellular_component | 34 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 50 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Inferred from Sequence Model | cellular_component | 52 Inferred from Experiment | biological_process | 57 Plasmid maintenance assay evidence | fission_yeast_phenotype | 58 quantitative PCR | gene_ex | 59 Inferred from Expression Pattern | biological_process | 61 Inferred from Mutant Phenotype | cellular_component | 67 Inferred from Physical Interaction | biological_process | 95 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 97 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 102 Substance quantification | fission_yeast_phenotype | 117 Traceable Author Statement | cellular_component | 121 Northern assay evidence | fission_yeast_phenotype | 125 Traceable Author Statement | molecular_function | 126 Inferred from Genetic Interaction | molecular_function | 127 Inferred from Physical Interaction | cellular_component | 129 Inferred by Curator | molecular_function | 142 reporter gene assay evidence | gene_ex | 143 Inferred from Sequence Model | biological_process | 156 quantitative PCR | fission_yeast_phenotype | 158 Traceable Author Statement | biological_process | 195 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Non-traceable Author Statement | molecular_function | 239 Co-immunoprecipitation experiment | fission_yeast_phenotype | 283 Non-traceable Author Statement | cellular_component | 297 Western blot evidence | gene_ex | 333 Inferred from Sequence or Structural Similarity | sequence | 356 experimental phenotypic evidence | fission_yeast_phenotype | 493 competitive growth assay evidence | fission_yeast_phenotype | 497 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 500 Non-traceable Author Statement | biological_process | 529 Inferred from Sequence or Structural Similarity | molecular_function | 538 Inferred by Curator | cellular_component | 567 Inferred from Sequence Model | molecular_function | 601 Inferred from Direct Assay | biological_process | 615 Substance quantification evidence | fission_yeast_phenotype | 642 Inferred from Sequence or Structural Similarity | biological_process | 665 Inferred from Genetic Interaction | biological_process | 668 Inferred from Sequence or Structural Similarity | cellular_component | 671 Inferred from Electronic Annotation | biological_process | 712 Northern assay evidence | gene_ex | 752 Flow cytometry data | fission_yeast_phenotype | 773 Other | fission_yeast_phenotype | 829 Reporter gene assay | fission_yeast_phenotype | 887 mass spectrometry evidence | PSI-MOD | 1086 gel electrophoresis evidence | fission_yeast_phenotype | 1110 Inferred from Electronic Annotation | cellular_component | 1121 Inferred by Curator | biological_process | 1141 Enzyme assay data | fission_yeast_phenotype | 1231 Inferred from Direct Assay | molecular_function | 1380 Inferred from Physical Interaction | molecular_function | 1408 expression microarray evidence | gene_ex | 1438 Inferred from Sequence Orthology | molecular_function | 1512 Western blot assay | fission_yeast_phenotype | 1683 Transcript expression level evidence | fission_yeast_phenotype | 1889 Inferred from Mutant Phenotype | molecular_function | 2053 Inferred from Sequence Orthology | cellular_component | 2420 Inferred from Electronic Annotation | molecular_function | 2496 Inferred from Sequence Orthology | biological_process | 2731 Inferred from Direct Assay | PSI-MOD | 3432 Inferred from Mutant Phenotype | biological_process | 3575 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | cellular_component | 10914 mass spectrometry evidence | gene_ex | 13682 Cell growth assay | fission_yeast_phenotype | 16881 experimental evidence | gene_ex | 20360 Microscopy | fission_yeast_phenotype | 25513 (104 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 16881 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 500 Chromatography evidence | fission_yeast_phenotype | 26 Co-immunoprecipitation experiment | fission_yeast_phenotype | 283 competitive growth assay evidence | fission_yeast_phenotype | 497 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 97 Enzyme assay data | fission_yeast_phenotype | 1231 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 experimental evidence | gene_ex | 20360 experimental evidence | PSI-MOD | 8141 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1438 Flow cytometry data | fission_yeast_phenotype | 773 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 1110 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 8 Inferred by Curator | molecular_function | 142 Inferred by Curator | cellular_component | 567 Inferred by Curator | biological_process | 1141 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | PSI-MOD | 3432 Inferred from Direct Assay | biological_process | 615 Inferred from Direct Assay | cellular_component | 10914 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1380 Inferred from Direct Assay | sequence | 2 Inferred from Electronic Annotation | molecular_function | 2496 Inferred from Electronic Annotation | biological_process | 712 Inferred from Electronic Annotation | cellular_component | 1121 Inferred from Experiment | biological_process | 57 Inferred from Experiment | molecular_function | 27 Inferred from Experiment | cellular_component | 34 Inferred from Expression Pattern | biological_process | 61 Inferred from Genetic Interaction | molecular_function | 127 Inferred from Genetic Interaction | cellular_component | 50 Inferred from Genetic Interaction | biological_process | 668 Inferred from Genomic Context | biological_process | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 2053 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Mutant Phenotype | biological_process | 3575 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | cellular_component | 67 Inferred from Physical Interaction | molecular_function | 1408 Inferred from Physical Interaction | cellular_component | 129 Inferred from Physical Interaction | biological_process | 95 Inferred from Physical Interaction | misc | 2 inferred from Reviewed Computational Analysis | cellular_component | 4 Inferred from Sequence Model | biological_process | 156 Inferred from Sequence Model | molecular_function | 601 Inferred from Sequence Model | cellular_component | 52 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence or Structural Similarity | cellular_component | 671 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | molecular_function | 538 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | biological_process | 665 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence Orthology | molecular_function | 1512 Inferred from Sequence Orthology | biological_process | 2731 Inferred from Sequence Orthology | cellular_component | 2420 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 mass spectrometry evidence | PSI-MOD | 1086 Microscopy | fission_yeast_phenotype | 25513 Non-traceable Author Statement | molecular_function | 239 Non-traceable Author Statement | cellular_component | 297 Non-traceable Author Statement | biological_process | 529 Non-traceable Author Statement | complementation | 1 Northern assay evidence | gene_ex | 752 Northern assay evidence | fission_yeast_phenotype | 125 Other | fission_yeast_phenotype | 829 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 58 quantitative PCR | fission_yeast_phenotype | 158 quantitative PCR | gene_ex | 59 Reporter gene assay | fission_yeast_phenotype | 887 reporter gene assay evidence | gene_ex | 143 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 117 Substance quantification evidence | fission_yeast_phenotype | 642 Traceable Author Statement | sequence | 2 Traceable Author Statement | cellular_component | 121 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 195 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | molecular_function | 126 transcript expression level evidence | gene_ex | 10 Transcript expression level evidence | fission_yeast_phenotype | 1889 Western blot assay | fission_yeast_phenotype | 1683 Western blot evidence | gene_ex | 333 Western blot evidence | fission_yeast_phenotype | 1 (104 rows) total: count -------- 187350 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1098 | PSI-MOD 1145 | molecular_function 1668 | cellular_component 2101 | biological_process 13143 | PomBase annotation extension terms 19130 | fission_yeast_phenotype (6 rows) total ------- 38285 (1 row)