counts of all annotation by type:
count | cv_name
-------+--------------------------------------
2 | DNA_binding_specificity
4 | external_link
21 | ex_tools
27 | cat_act
32 | pathway
89 | m_f_g
157 | subunit_composition
232 | genome_org
344 | complementation
349 | misc
839 | EC numbers
870 | name_description
948 | sequence
1025 | disease_associated
1608 | warning
1860 | PomBase family or domain
5137 | PomBase gene characterisation status
6996 | PomBase gene products
10650 | molecular_function
11201 | biological_process
12840 | PSI-MOD
16447 | cellular_component
24535 | species_dist
36895 | gene_ex
54242 | fission_yeast_phenotype
(25 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Inferred from Sequence Orthology | biological_process | 2731
Non-traceable Author Statement | biological_process | 529
Inferred from Genomic Context | biological_process | 1
Inferred from Mutant Phenotype | biological_process | 3575
Inferred from Sequence or Structural Similarity | biological_process | 665
Inferred from Direct Assay | biological_process | 615
Inferred from Physical Interaction | biological_process | 95
Inferred from Experiment | biological_process | 57
Inferred from Genetic Interaction | biological_process | 668
Inferred from Sequence Model | biological_process | 156
Inferred by Curator | biological_process | 1141
Inferred from Expression Pattern | biological_process | 61
Inferred from Electronic Annotation | biological_process | 712
Traceable Author Statement | biological_process | 195
Inferred from Sequence Orthology | cellular_component | 2420
Inferred from Genetic Interaction | cellular_component | 50
Inferred from Direct Assay | cellular_component | 10914
Non-traceable Author Statement | cellular_component | 297
Inferred from Mutant Phenotype | cellular_component | 67
Inferred from Electronic Annotation | cellular_component | 1121
Inferred from Sequence or Structural Similarity | cellular_component | 671
Inferred from Sequence Model | cellular_component | 52
Inferred from Physical Interaction | cellular_component | 129
Inferred from Experiment | cellular_component | 34
Inferred by Curator | cellular_component | 567
Traceable Author Statement | cellular_component | 121
inferred from Reviewed Computational Analysis | cellular_component | 4
Non-traceable Author Statement | complementation | 1
Cell growth assay | fission_yeast_phenotype | 16881
Other direct assay | fission_yeast_phenotype | 9
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Western blot assay | fission_yeast_phenotype | 1683
Transcript expression level evidence | fission_yeast_phenotype | 1889
competitive growth assay evidence | fission_yeast_phenotype | 497
Chromatography evidence | fission_yeast_phenotype | 26
Western blot evidence | fission_yeast_phenotype | 1
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32
Immunolocalization experiment data | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 9
gel electrophoresis evidence | fission_yeast_phenotype | 1110
Reporter gene assay | fission_yeast_phenotype | 887
Plasmid maintenance assay evidence | fission_yeast_phenotype | 58
Flow cytometry data | fission_yeast_phenotype | 773
Enzyme assay data | fission_yeast_phenotype | 1231
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 500
Inferred from Mutant Phenotype | fission_yeast_phenotype | 2
Microscopy | fission_yeast_phenotype | 25513
quantitative PCR | fission_yeast_phenotype | 158
Northern assay evidence | fission_yeast_phenotype | 125
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 97
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3
Substance quantification | fission_yeast_phenotype | 117
experimental phenotypic evidence | fission_yeast_phenotype | 493
Other | fission_yeast_phenotype | 829
Substance quantification evidence | fission_yeast_phenotype | 642
Co-immunoprecipitation experiment | fission_yeast_phenotype | 283
in situ hybridization assay evidence | gene_ex | 14
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
reporter gene assay evidence | gene_ex | 143
transcript expression level evidence | gene_ex | 10
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51
Western blot evidence | gene_ex | 333
RNA protection assay evidence | gene_ex | 15
mass spectrometry evidence | gene_ex | 13682
Northern assay evidence | gene_ex | 752
experimental evidence | gene_ex | 20360
quantitative PCR | gene_ex | 59
expression microarray evidence | gene_ex | 1438
fusion protein localization evidence | gene_ex | 10
immunofluorescence evidence | gene_ex | 6
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Direct Assay | misc | 1
Inferred from Physical Interaction | molecular_function | 1408
Inferred from Key Residues | molecular_function | 1
Inferred from Electronic Annotation | molecular_function | 2496
Inferred from Sequence or Structural Similarity | molecular_function | 538
Inferred from Genetic Interaction | molecular_function | 127
Inferred by Curator | molecular_function | 142
Inferred from Direct Assay | molecular_function | 1380
Inferred from Sequence Orthology | molecular_function | 1512
Non-traceable Author Statement | molecular_function | 239
Inferred from Sequence Model | molecular_function | 601
Inferred from Mutant Phenotype | molecular_function | 2053
Traceable Author Statement | molecular_function | 126
Inferred from Experiment | molecular_function | 27
Traceable Author Statement | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Sequence Model | PSI-MOD | 2
Traceable Author Statement | PSI-MOD | 1
mass spectrometry evidence | PSI-MOD | 1086
experimental evidence | PSI-MOD | 8141
Inferred from Direct Assay | PSI-MOD | 3432
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Direct Assay | sequence | 2
Inferred from Mutant Phenotype | sequence | 7
Traceable Author Statement | sequence | 2
Inferred from Sequence or Structural Similarity | sequence | 356
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Direct Assay | subunit_composition | 3
Inferred from Sequence or Structural Similarity | warning | 102
(104 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Non-traceable Author Statement | complementation | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Direct Assay | misc | 1
Western blot evidence | fission_yeast_phenotype | 1
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Genomic Context | biological_process | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | fission_yeast_phenotype | 2
Inferred from Physical Interaction | misc | 2
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Direct Assay | subunit_composition | 3
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3
Inferred from Mutant Phenotype | misc | 4
inferred from Reviewed Computational Analysis | cellular_component | 4
Traceable Author Statement | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
immunofluorescence evidence | gene_ex | 6
Inferred from Mutant Phenotype | sequence | 7
Immunolocalization experiment data | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 9
Other direct assay | fission_yeast_phenotype | 9
transcript expression level evidence | gene_ex | 10
fusion protein localization evidence | gene_ex | 10
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
RNA protection assay evidence | gene_ex | 15
Chromatography evidence | fission_yeast_phenotype | 26
Inferred from Experiment | molecular_function | 27
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32
Inferred from Experiment | cellular_component | 34
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Genetic Interaction | cellular_component | 50
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51
Inferred from Sequence Model | cellular_component | 52
Inferred from Experiment | biological_process | 57
Plasmid maintenance assay evidence | fission_yeast_phenotype | 58
quantitative PCR | gene_ex | 59
Inferred from Expression Pattern | biological_process | 61
Inferred from Mutant Phenotype | cellular_component | 67
Inferred from Physical Interaction | biological_process | 95
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 97
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | warning | 102
Substance quantification | fission_yeast_phenotype | 117
Traceable Author Statement | cellular_component | 121
Northern assay evidence | fission_yeast_phenotype | 125
Traceable Author Statement | molecular_function | 126
Inferred from Genetic Interaction | molecular_function | 127
Inferred from Physical Interaction | cellular_component | 129
Inferred by Curator | molecular_function | 142
reporter gene assay evidence | gene_ex | 143
Inferred from Sequence Model | biological_process | 156
quantitative PCR | fission_yeast_phenotype | 158
Traceable Author Statement | biological_process | 195
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Non-traceable Author Statement | molecular_function | 239
Co-immunoprecipitation experiment | fission_yeast_phenotype | 283
Non-traceable Author Statement | cellular_component | 297
Western blot evidence | gene_ex | 333
Inferred from Sequence or Structural Similarity | sequence | 356
experimental phenotypic evidence | fission_yeast_phenotype | 493
competitive growth assay evidence | fission_yeast_phenotype | 497
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 500
Non-traceable Author Statement | biological_process | 529
Inferred from Sequence or Structural Similarity | molecular_function | 538
Inferred by Curator | cellular_component | 567
Inferred from Sequence Model | molecular_function | 601
Inferred from Direct Assay | biological_process | 615
Substance quantification evidence | fission_yeast_phenotype | 642
Inferred from Sequence or Structural Similarity | biological_process | 665
Inferred from Genetic Interaction | biological_process | 668
Inferred from Sequence or Structural Similarity | cellular_component | 671
Inferred from Electronic Annotation | biological_process | 712
Northern assay evidence | gene_ex | 752
Flow cytometry data | fission_yeast_phenotype | 773
Other | fission_yeast_phenotype | 829
Reporter gene assay | fission_yeast_phenotype | 887
mass spectrometry evidence | PSI-MOD | 1086
gel electrophoresis evidence | fission_yeast_phenotype | 1110
Inferred from Electronic Annotation | cellular_component | 1121
Inferred by Curator | biological_process | 1141
Enzyme assay data | fission_yeast_phenotype | 1231
Inferred from Direct Assay | molecular_function | 1380
Inferred from Physical Interaction | molecular_function | 1408
expression microarray evidence | gene_ex | 1438
Inferred from Sequence Orthology | molecular_function | 1512
Western blot assay | fission_yeast_phenotype | 1683
Transcript expression level evidence | fission_yeast_phenotype | 1889
Inferred from Mutant Phenotype | molecular_function | 2053
Inferred from Sequence Orthology | cellular_component | 2420
Inferred from Electronic Annotation | molecular_function | 2496
Inferred from Sequence Orthology | biological_process | 2731
Inferred from Direct Assay | PSI-MOD | 3432
Inferred from Mutant Phenotype | biological_process | 3575
experimental evidence | PSI-MOD | 8141
Inferred from Direct Assay | cellular_component | 10914
mass spectrometry evidence | gene_ex | 13682
Cell growth assay | fission_yeast_phenotype | 16881
experimental evidence | gene_ex | 20360
Microscopy | fission_yeast_phenotype | 25513
(104 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Cell growth assay | fission_yeast_phenotype | 16881
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 500
Chromatography evidence | fission_yeast_phenotype | 26
Co-immunoprecipitation experiment | fission_yeast_phenotype | 283
competitive growth assay evidence | fission_yeast_phenotype | 497
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 97
Enzyme assay data | fission_yeast_phenotype | 1231
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3
experimental evidence | gene_ex | 20360
experimental evidence | PSI-MOD | 8141
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 1438
Flow cytometry data | fission_yeast_phenotype | 773
fusion protein localization evidence | gene_ex | 10
gel electrophoresis evidence | fission_yeast_phenotype | 1110
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
Immunolocalization experiment data | fission_yeast_phenotype | 8
Inferred by Curator | molecular_function | 142
Inferred by Curator | cellular_component | 567
Inferred by Curator | biological_process | 1141
Inferred from Direct Assay | subunit_composition | 3
Inferred from Direct Assay | PSI-MOD | 3432
Inferred from Direct Assay | biological_process | 615
Inferred from Direct Assay | cellular_component | 10914
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1380
Inferred from Direct Assay | sequence | 2
Inferred from Electronic Annotation | molecular_function | 2496
Inferred from Electronic Annotation | biological_process | 712
Inferred from Electronic Annotation | cellular_component | 1121
Inferred from Experiment | biological_process | 57
Inferred from Experiment | molecular_function | 27
Inferred from Experiment | cellular_component | 34
Inferred from Expression Pattern | biological_process | 61
Inferred from Genetic Interaction | molecular_function | 127
Inferred from Genetic Interaction | cellular_component | 50
Inferred from Genetic Interaction | biological_process | 668
Inferred from Genomic Context | biological_process | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 2053
Inferred from Mutant Phenotype | fission_yeast_phenotype | 2
Inferred from Mutant Phenotype | biological_process | 3575
Inferred from Mutant Phenotype | sequence | 7
Inferred from Mutant Phenotype | cellular_component | 67
Inferred from Physical Interaction | molecular_function | 1408
Inferred from Physical Interaction | cellular_component | 129
Inferred from Physical Interaction | biological_process | 95
Inferred from Physical Interaction | misc | 2
inferred from Reviewed Computational Analysis | cellular_component | 4
Inferred from Sequence Model | biological_process | 156
Inferred from Sequence Model | molecular_function | 601
Inferred from Sequence Model | cellular_component | 52
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | sequence | 356
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | warning | 102
Inferred from Sequence or Structural Similarity | cellular_component | 671
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | molecular_function | 538
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | biological_process | 665
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence Orthology | molecular_function | 1512
Inferred from Sequence Orthology | biological_process | 2731
Inferred from Sequence Orthology | cellular_component | 2420
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
mass spectrometry evidence | PSI-MOD | 1086
Microscopy | fission_yeast_phenotype | 25513
Non-traceable Author Statement | molecular_function | 239
Non-traceable Author Statement | cellular_component | 297
Non-traceable Author Statement | biological_process | 529
Non-traceable Author Statement | complementation | 1
Northern assay evidence | gene_ex | 752
Northern assay evidence | fission_yeast_phenotype | 125
Other | fission_yeast_phenotype | 829
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 9
Plasmid maintenance assay evidence | fission_yeast_phenotype | 58
quantitative PCR | fission_yeast_phenotype | 158
quantitative PCR | gene_ex | 59
Reporter gene assay | fission_yeast_phenotype | 887
reporter gene assay evidence | gene_ex | 143
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51
RNA protection assay evidence | gene_ex | 15
Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 32
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Substance quantification | fission_yeast_phenotype | 117
Substance quantification evidence | fission_yeast_phenotype | 642
Traceable Author Statement | sequence | 2
Traceable Author Statement | cellular_component | 121
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | biological_process | 195
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | molecular_function | 126
transcript expression level evidence | gene_ex | 10
Transcript expression level evidence | fission_yeast_phenotype | 1889
Western blot assay | fission_yeast_phenotype | 1683
Western blot evidence | gene_ex | 333
Western blot evidence | fission_yeast_phenotype | 1
(104 rows)
total:
count
--------
187350
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
1098 | PSI-MOD
1145 | molecular_function
1668 | cellular_component
2101 | biological_process
13143 | PomBase annotation extension terms
19130 | fission_yeast_phenotype
(6 rows)
total
-------
38285
(1 row)