counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 5 | external_link 21 | ex_tools 28 | cat_act 32 | pathway 89 | m_f_g 164 | subunit_composition 232 | genome_org 348 | complementation 354 | misc 839 | EC numbers 877 | name_description 949 | sequence 1029 | disease_associated 1631 | warning 1856 | PomBase family or domain 5138 | PomBase gene characterisation status 6991 | PomBase gene products 10716 | molecular_function 11101 | biological_process 12956 | PSI-MOD 16537 | cellular_component 24552 | species_dist 36907 | gene_ex 56677 | fission_yeast_phenotype (25 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence Orthology | biological_process | 2712 Non-traceable Author Statement | biological_process | 516 Inferred from Genomic Context | biological_process | 1 Inferred from Mutant Phenotype | biological_process | 3544 Inferred from Sequence or Structural Similarity | biological_process | 662 Inferred from Direct Assay | biological_process | 611 Inferred from Physical Interaction | biological_process | 92 Inferred from Experiment | biological_process | 58 Inferred from Genetic Interaction | biological_process | 665 Inferred from Sequence Model | biological_process | 160 Inferred by Curator | biological_process | 1131 Inferred from Expression Pattern | biological_process | 54 Inferred from Electronic Annotation | biological_process | 711 Traceable Author Statement | biological_process | 184 Inferred from Sequence Orthology | cellular_component | 2433 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Direct Assay | cellular_component | 10999 Non-traceable Author Statement | cellular_component | 294 Inferred from Mutant Phenotype | cellular_component | 75 Inferred from Electronic Annotation | cellular_component | 1131 Inferred from Sequence or Structural Similarity | cellular_component | 664 Inferred from Sequence Model | cellular_component | 50 Inferred from Physical Interaction | cellular_component | 134 Inferred from Experiment | cellular_component | 30 Inferred by Curator | cellular_component | 568 Traceable Author Statement | cellular_component | 106 inferred from Reviewed Computational Analysis | cellular_component | 4 Non-traceable Author Statement | complementation | 1 Cell growth assay | fission_yeast_phenotype | 18285 Other direct assay | fission_yeast_phenotype | 9 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Western blot assay | fission_yeast_phenotype | 1855 Transcript expression level evidence | fission_yeast_phenotype | 1879 competitive growth assay evidence | fission_yeast_phenotype | 497 Chromatography evidence | fission_yeast_phenotype | 41 Western blot evidence | fission_yeast_phenotype | 1 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 1153 Reporter gene assay | fission_yeast_phenotype | 1020 Plasmid maintenance assay evidence | fission_yeast_phenotype | 59 Flow cytometry data | fission_yeast_phenotype | 791 Enzyme assay data | fission_yeast_phenotype | 1281 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 551 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Microscopy | fission_yeast_phenotype | 25941 quantitative PCR | fission_yeast_phenotype | 184 Northern assay evidence | fission_yeast_phenotype | 125 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 97 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 Substance quantification | fission_yeast_phenotype | 117 experimental phenotypic evidence | fission_yeast_phenotype | 493 Other | fission_yeast_phenotype | 924 Substance quantification evidence | fission_yeast_phenotype | 645 Co-immunoprecipitation experiment | fission_yeast_phenotype | 300 in situ hybridization assay evidence | gene_ex | 14 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 reporter gene assay evidence | gene_ex | 143 transcript expression level evidence | gene_ex | 10 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Western blot evidence | gene_ex | 342 RNA protection assay evidence | gene_ex | 15 mass spectrometry evidence | gene_ex | 13682 Northern assay evidence | gene_ex | 757 experimental evidence | gene_ex | 20348 quantitative PCR | gene_ex | 69 expression microarray evidence | gene_ex | 1438 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | molecular_function | 1424 Inferred from Key Residues | molecular_function | 1 Inferred from Electronic Annotation | molecular_function | 2495 Inferred from Sequence or Structural Similarity | molecular_function | 537 Inferred from Genetic Interaction | molecular_function | 128 Inferred by Curator | molecular_function | 141 Inferred from Direct Assay | molecular_function | 1420 Inferred from Sequence Orthology | molecular_function | 1522 Non-traceable Author Statement | molecular_function | 239 Inferred from Sequence Model | molecular_function | 597 Inferred from Mutant Phenotype | molecular_function | 2064 Traceable Author Statement | molecular_function | 120 Inferred from Experiment | molecular_function | 28 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence Model | PSI-MOD | 2 Traceable Author Statement | PSI-MOD | 1 mass spectrometry evidence | PSI-MOD | 1173 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | PSI-MOD | 3460 Inferred from Sequence or Structural Similarity | PSI-MOD | 103 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 7 Traceable Author Statement | sequence | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | warning | 102 (104 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Genomic Context | biological_process | 1 Inferred from Key Residues | molecular_function | 1 Western blot evidence | fission_yeast_phenotype | 1 Inferred from Sequence or Structural Similarity | misc | 1 Traceable Author Statement | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | sequence | 2 Traceable Author Statement | sequence | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Physical Interaction | misc | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 Inferred from Direct Assay | subunit_composition | 3 inferred from Reviewed Computational Analysis | cellular_component | 4 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Mutant Phenotype | sequence | 7 Particle size and count assay | fission_yeast_phenotype | 9 Other direct assay | fission_yeast_phenotype | 9 Immunolocalization experiment data | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 transcript expression level evidence | gene_ex | 10 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 22 Inferred from Experiment | molecular_function | 28 Inferred from Experiment | cellular_component | 30 Chromatography evidence | fission_yeast_phenotype | 41 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Sequence Model | cellular_component | 50 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Inferred from Expression Pattern | biological_process | 54 Inferred from Experiment | biological_process | 58 Plasmid maintenance assay evidence | fission_yeast_phenotype | 59 quantitative PCR | gene_ex | 69 Inferred from Mutant Phenotype | cellular_component | 75 Inferred from Physical Interaction | biological_process | 92 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 97 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence or Structural Similarity | PSI-MOD | 103 Traceable Author Statement | cellular_component | 106 Substance quantification | fission_yeast_phenotype | 117 Traceable Author Statement | molecular_function | 120 Northern assay evidence | fission_yeast_phenotype | 125 Inferred from Genetic Interaction | molecular_function | 128 Inferred from Physical Interaction | cellular_component | 134 Inferred by Curator | molecular_function | 141 reporter gene assay evidence | gene_ex | 143 Inferred from Sequence Model | biological_process | 160 quantitative PCR | fission_yeast_phenotype | 184 Traceable Author Statement | biological_process | 184 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Non-traceable Author Statement | molecular_function | 239 Non-traceable Author Statement | cellular_component | 294 Co-immunoprecipitation experiment | fission_yeast_phenotype | 300 Western blot evidence | gene_ex | 342 Inferred from Sequence or Structural Similarity | sequence | 356 experimental phenotypic evidence | fission_yeast_phenotype | 493 competitive growth assay evidence | fission_yeast_phenotype | 497 Non-traceable Author Statement | biological_process | 516 Inferred from Sequence or Structural Similarity | molecular_function | 537 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 551 Inferred by Curator | cellular_component | 568 Inferred from Sequence Model | molecular_function | 597 Inferred from Direct Assay | biological_process | 611 Substance quantification evidence | fission_yeast_phenotype | 645 Inferred from Sequence or Structural Similarity | biological_process | 662 Inferred from Sequence or Structural Similarity | cellular_component | 664 Inferred from Genetic Interaction | biological_process | 665 Inferred from Electronic Annotation | biological_process | 711 Northern assay evidence | gene_ex | 757 Flow cytometry data | fission_yeast_phenotype | 791 Other | fission_yeast_phenotype | 924 Reporter gene assay | fission_yeast_phenotype | 1020 Inferred by Curator | biological_process | 1131 Inferred from Electronic Annotation | cellular_component | 1131 gel electrophoresis evidence | fission_yeast_phenotype | 1153 mass spectrometry evidence | PSI-MOD | 1173 Enzyme assay data | fission_yeast_phenotype | 1281 Inferred from Direct Assay | molecular_function | 1420 Inferred from Physical Interaction | molecular_function | 1424 expression microarray evidence | gene_ex | 1438 Inferred from Sequence Orthology | molecular_function | 1522 Western blot assay | fission_yeast_phenotype | 1855 Transcript expression level evidence | fission_yeast_phenotype | 1879 Inferred from Mutant Phenotype | molecular_function | 2064 Inferred from Sequence Orthology | cellular_component | 2433 Inferred from Electronic Annotation | molecular_function | 2495 Inferred from Sequence Orthology | biological_process | 2712 Inferred from Direct Assay | PSI-MOD | 3460 Inferred from Mutant Phenotype | biological_process | 3544 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | cellular_component | 10999 mass spectrometry evidence | gene_ex | 13682 Cell growth assay | fission_yeast_phenotype | 18285 experimental evidence | gene_ex | 20348 Microscopy | fission_yeast_phenotype | 25941 (104 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 18285 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 551 Chromatography evidence | fission_yeast_phenotype | 41 Co-immunoprecipitation experiment | fission_yeast_phenotype | 300 competitive growth assay evidence | fission_yeast_phenotype | 497 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 97 Enzyme assay data | fission_yeast_phenotype | 1281 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 experimental evidence | gene_ex | 20348 experimental evidence | PSI-MOD | 8141 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1438 Flow cytometry data | fission_yeast_phenotype | 791 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 1153 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 9 Inferred by Curator | molecular_function | 141 Inferred by Curator | cellular_component | 568 Inferred by Curator | biological_process | 1131 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | PSI-MOD | 3460 Inferred from Direct Assay | biological_process | 611 Inferred from Direct Assay | cellular_component | 10999 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1420 Inferred from Direct Assay | sequence | 2 Inferred from Electronic Annotation | molecular_function | 2495 Inferred from Electronic Annotation | biological_process | 711 Inferred from Electronic Annotation | cellular_component | 1131 Inferred from Experiment | biological_process | 58 Inferred from Experiment | molecular_function | 28 Inferred from Experiment | cellular_component | 30 Inferred from Expression Pattern | biological_process | 54 Inferred from Genetic Interaction | molecular_function | 128 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Genetic Interaction | biological_process | 665 Inferred from Genomic Context | biological_process | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 2064 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Mutant Phenotype | biological_process | 3544 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | cellular_component | 75 Inferred from Physical Interaction | molecular_function | 1424 Inferred from Physical Interaction | cellular_component | 134 Inferred from Physical Interaction | biological_process | 92 Inferred from Physical Interaction | misc | 2 inferred from Reviewed Computational Analysis | cellular_component | 4 Inferred from Sequence Model | biological_process | 160 Inferred from Sequence Model | molecular_function | 597 Inferred from Sequence Model | cellular_component | 50 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | PSI-MOD | 103 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence or Structural Similarity | cellular_component | 664 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | molecular_function | 537 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | biological_process | 662 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence Orthology | molecular_function | 1522 Inferred from Sequence Orthology | biological_process | 2712 Inferred from Sequence Orthology | cellular_component | 2433 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 mass spectrometry evidence | PSI-MOD | 1173 Microscopy | fission_yeast_phenotype | 25941 Non-traceable Author Statement | molecular_function | 239 Non-traceable Author Statement | cellular_component | 294 Non-traceable Author Statement | biological_process | 516 Non-traceable Author Statement | complementation | 1 Northern assay evidence | gene_ex | 757 Northern assay evidence | fission_yeast_phenotype | 125 Other | fission_yeast_phenotype | 924 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 59 quantitative PCR | fission_yeast_phenotype | 184 quantitative PCR | gene_ex | 69 Reporter gene assay | fission_yeast_phenotype | 1020 reporter gene assay evidence | gene_ex | 143 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 117 Substance quantification evidence | fission_yeast_phenotype | 645 Traceable Author Statement | sequence | 2 Traceable Author Statement | cellular_component | 106 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 184 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | molecular_function | 120 transcript expression level evidence | gene_ex | 10 Transcript expression level evidence | fission_yeast_phenotype | 1879 Western blot assay | fission_yeast_phenotype | 1855 Western blot evidence | gene_ex | 342 Western blot evidence | fission_yeast_phenotype | 1 (104 rows) total: count -------- 190031 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1105 | PSI-MOD 1201 | molecular_function 1705 | cellular_component 2148 | biological_process 13897 | PomBase annotation extension terms 20247 | fission_yeast_phenotype (6 rows) total ------- 40303 (1 row)