counts of all annotation by type: count | cv_name -------+-------------------------------------- 2 | DNA_binding_specificity 5 | external_link 21 | ex_tools 28 | cat_act 32 | pathway 89 | m_f_g 169 | subunit_composition 232 | genome_org 349 | complementation 354 | misc 839 | EC numbers 880 | name_description 949 | sequence 1029 | disease_associated 1633 | warning 1856 | PomBase family or domain 5138 | PomBase gene characterisation status 6991 | PomBase gene products 10717 | molecular_function 11149 | biological_process 12974 | PSI-MOD 16637 | cellular_component 24552 | species_dist 36910 | gene_ex 57615 | fission_yeast_phenotype (25 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence Orthology | biological_process | 2702 Non-traceable Author Statement | biological_process | 522 Inferred from Genomic Context | biological_process | 1 Inferred from Mutant Phenotype | biological_process | 3555 Inferred from Sequence or Structural Similarity | biological_process | 660 Inferred from Direct Assay | biological_process | 631 Inferred from Physical Interaction | biological_process | 93 Inferred from Experiment | biological_process | 63 Inferred from Genetic Interaction | biological_process | 678 Inferred from Sequence Model | biological_process | 159 Inferred by Curator | biological_process | 1134 Inferred from Expression Pattern | biological_process | 54 Inferred from Electronic Annotation | biological_process | 715 Traceable Author Statement | biological_process | 182 Inferred from Sequence Orthology | cellular_component | 2428 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Direct Assay | cellular_component | 11038 Non-traceable Author Statement | cellular_component | 356 Inferred from Mutant Phenotype | cellular_component | 59 Inferred from Electronic Annotation | cellular_component | 1149 Inferred from Sequence or Structural Similarity | cellular_component | 664 Inferred from Sequence Model | cellular_component | 50 Inferred from Physical Interaction | cellular_component | 134 Inferred from Experiment | cellular_component | 30 Inferred by Curator | cellular_component | 570 Traceable Author Statement | cellular_component | 106 inferred from Reviewed Computational Analysis | cellular_component | 4 Non-traceable Author Statement | complementation | 1 Cell growth assay | fission_yeast_phenotype | 18673 Other direct assay | fission_yeast_phenotype | 9 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Western blot assay | fission_yeast_phenotype | 1912 Transcript expression level evidence | fission_yeast_phenotype | 1945 competitive growth assay evidence | fission_yeast_phenotype | 497 Chromatography evidence | fission_yeast_phenotype | 41 Western blot evidence | fission_yeast_phenotype | 1 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 1335 Reporter gene assay | fission_yeast_phenotype | 1070 Plasmid maintenance assay evidence | fission_yeast_phenotype | 62 Flow cytometry data | fission_yeast_phenotype | 810 Enzyme assay data | fission_yeast_phenotype | 1289 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 560 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Microscopy | fission_yeast_phenotype | 26083 quantitative PCR | fission_yeast_phenotype | 184 Northern assay evidence | fission_yeast_phenotype | 125 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 97 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 Substance quantification | fission_yeast_phenotype | 117 experimental phenotypic evidence | fission_yeast_phenotype | 493 Other | fission_yeast_phenotype | 935 Substance quantification evidence | fission_yeast_phenotype | 647 Co-immunoprecipitation experiment | fission_yeast_phenotype | 301 in situ hybridization assay evidence | gene_ex | 14 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 reporter gene assay evidence | gene_ex | 143 transcript expression level evidence | gene_ex | 10 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Western blot evidence | gene_ex | 345 RNA protection assay evidence | gene_ex | 15 mass spectrometry evidence | gene_ex | 13682 Northern assay evidence | gene_ex | 757 experimental evidence | gene_ex | 20347 quantitative PCR | gene_ex | 69 expression microarray evidence | gene_ex | 1438 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | molecular_function | 1436 Inferred from Key Residues | molecular_function | 1 Inferred from Electronic Annotation | molecular_function | 2470 Inferred from Sequence or Structural Similarity | molecular_function | 537 Inferred from Genetic Interaction | molecular_function | 128 Inferred by Curator | molecular_function | 141 Inferred from Direct Assay | molecular_function | 1433 Inferred from Sequence Orthology | molecular_function | 1519 Non-traceable Author Statement | molecular_function | 238 Inferred from Sequence Model | molecular_function | 601 Inferred from Mutant Phenotype | molecular_function | 2065 Traceable Author Statement | molecular_function | 119 Inferred from Experiment | molecular_function | 29 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence Model | PSI-MOD | 2 Traceable Author Statement | PSI-MOD | 1 mass spectrometry evidence | PSI-MOD | 1173 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | PSI-MOD | 3479 Inferred from Sequence or Structural Similarity | PSI-MOD | 103 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 7 Traceable Author Statement | sequence | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | warning | 102 (104 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Genomic Context | biological_process | 1 Inferred from Key Residues | molecular_function | 1 Western blot evidence | fission_yeast_phenotype | 1 Inferred from Sequence or Structural Similarity | misc | 1 Traceable Author Statement | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | sequence | 2 Traceable Author Statement | sequence | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Physical Interaction | misc | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 Inferred from Direct Assay | subunit_composition | 3 inferred from Reviewed Computational Analysis | cellular_component | 4 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Mutant Phenotype | sequence | 7 Particle size and count assay | fission_yeast_phenotype | 9 Other direct assay | fission_yeast_phenotype | 9 Immunolocalization experiment data | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 transcript expression level evidence | gene_ex | 10 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 22 Inferred from Experiment | molecular_function | 29 Inferred from Experiment | cellular_component | 30 Chromatography evidence | fission_yeast_phenotype | 41 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Sequence Model | cellular_component | 50 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Inferred from Expression Pattern | biological_process | 54 Inferred from Mutant Phenotype | cellular_component | 59 Plasmid maintenance assay evidence | fission_yeast_phenotype | 62 Inferred from Experiment | biological_process | 63 quantitative PCR | gene_ex | 69 Inferred from Physical Interaction | biological_process | 93 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 97 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence or Structural Similarity | PSI-MOD | 103 Traceable Author Statement | cellular_component | 106 Substance quantification | fission_yeast_phenotype | 117 Traceable Author Statement | molecular_function | 119 Northern assay evidence | fission_yeast_phenotype | 125 Inferred from Genetic Interaction | molecular_function | 128 Inferred from Physical Interaction | cellular_component | 134 Inferred by Curator | molecular_function | 141 reporter gene assay evidence | gene_ex | 143 Inferred from Sequence Model | biological_process | 159 Traceable Author Statement | biological_process | 182 quantitative PCR | fission_yeast_phenotype | 184 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Non-traceable Author Statement | molecular_function | 238 Co-immunoprecipitation experiment | fission_yeast_phenotype | 301 Western blot evidence | gene_ex | 345 Non-traceable Author Statement | cellular_component | 356 Inferred from Sequence or Structural Similarity | sequence | 356 experimental phenotypic evidence | fission_yeast_phenotype | 493 competitive growth assay evidence | fission_yeast_phenotype | 497 Non-traceable Author Statement | biological_process | 522 Inferred from Sequence or Structural Similarity | molecular_function | 537 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 560 Inferred by Curator | cellular_component | 570 Inferred from Sequence Model | molecular_function | 601 Inferred from Direct Assay | biological_process | 631 Substance quantification evidence | fission_yeast_phenotype | 647 Inferred from Sequence or Structural Similarity | biological_process | 660 Inferred from Sequence or Structural Similarity | cellular_component | 664 Inferred from Genetic Interaction | biological_process | 678 Inferred from Electronic Annotation | biological_process | 715 Northern assay evidence | gene_ex | 757 Flow cytometry data | fission_yeast_phenotype | 810 Other | fission_yeast_phenotype | 935 Reporter gene assay | fission_yeast_phenotype | 1070 Inferred by Curator | biological_process | 1134 Inferred from Electronic Annotation | cellular_component | 1149 mass spectrometry evidence | PSI-MOD | 1173 Enzyme assay data | fission_yeast_phenotype | 1289 gel electrophoresis evidence | fission_yeast_phenotype | 1335 Inferred from Direct Assay | molecular_function | 1433 Inferred from Physical Interaction | molecular_function | 1436 expression microarray evidence | gene_ex | 1438 Inferred from Sequence Orthology | molecular_function | 1519 Western blot assay | fission_yeast_phenotype | 1912 Transcript expression level evidence | fission_yeast_phenotype | 1945 Inferred from Mutant Phenotype | molecular_function | 2065 Inferred from Sequence Orthology | cellular_component | 2428 Inferred from Electronic Annotation | molecular_function | 2470 Inferred from Sequence Orthology | biological_process | 2702 Inferred from Direct Assay | PSI-MOD | 3479 Inferred from Mutant Phenotype | biological_process | 3555 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | cellular_component | 11038 mass spectrometry evidence | gene_ex | 13682 Cell growth assay | fission_yeast_phenotype | 18673 experimental evidence | gene_ex | 20347 Microscopy | fission_yeast_phenotype | 26083 (104 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 18673 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 560 Chromatography evidence | fission_yeast_phenotype | 41 Co-immunoprecipitation experiment | fission_yeast_phenotype | 301 competitive growth assay evidence | fission_yeast_phenotype | 497 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 97 Enzyme assay data | fission_yeast_phenotype | 1289 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 3 experimental evidence | gene_ex | 20347 experimental evidence | PSI-MOD | 8141 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1438 Flow cytometry data | fission_yeast_phenotype | 810 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 1335 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 9 Inferred by Curator | molecular_function | 141 Inferred by Curator | cellular_component | 570 Inferred by Curator | biological_process | 1134 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | PSI-MOD | 3479 Inferred from Direct Assay | biological_process | 631 Inferred from Direct Assay | cellular_component | 11038 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1433 Inferred from Direct Assay | sequence | 2 Inferred from Electronic Annotation | molecular_function | 2470 Inferred from Electronic Annotation | biological_process | 715 Inferred from Electronic Annotation | cellular_component | 1149 Inferred from Experiment | biological_process | 63 Inferred from Experiment | molecular_function | 29 Inferred from Experiment | cellular_component | 30 Inferred from Expression Pattern | biological_process | 54 Inferred from Genetic Interaction | molecular_function | 128 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Genetic Interaction | biological_process | 678 Inferred from Genomic Context | biological_process | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 2065 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Mutant Phenotype | biological_process | 3555 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | cellular_component | 59 Inferred from Physical Interaction | molecular_function | 1436 Inferred from Physical Interaction | cellular_component | 134 Inferred from Physical Interaction | biological_process | 93 Inferred from Physical Interaction | misc | 2 inferred from Reviewed Computational Analysis | cellular_component | 4 Inferred from Sequence Model | biological_process | 159 Inferred from Sequence Model | molecular_function | 601 Inferred from Sequence Model | cellular_component | 50 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | PSI-MOD | 103 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence or Structural Similarity | cellular_component | 664 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | molecular_function | 537 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | biological_process | 660 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence Orthology | molecular_function | 1519 Inferred from Sequence Orthology | biological_process | 2702 Inferred from Sequence Orthology | cellular_component | 2428 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 mass spectrometry evidence | PSI-MOD | 1173 Microscopy | fission_yeast_phenotype | 26083 Non-traceable Author Statement | molecular_function | 238 Non-traceable Author Statement | cellular_component | 356 Non-traceable Author Statement | biological_process | 522 Non-traceable Author Statement | complementation | 1 Northern assay evidence | gene_ex | 757 Northern assay evidence | fission_yeast_phenotype | 125 Other | fission_yeast_phenotype | 935 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 62 quantitative PCR | fission_yeast_phenotype | 184 quantitative PCR | gene_ex | 69 Reporter gene assay | fission_yeast_phenotype | 1070 reporter gene assay evidence | gene_ex | 143 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 15 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 117 Substance quantification evidence | fission_yeast_phenotype | 647 Traceable Author Statement | sequence | 2 Traceable Author Statement | cellular_component | 106 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 182 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | molecular_function | 119 transcript expression level evidence | gene_ex | 10 Transcript expression level evidence | fission_yeast_phenotype | 1945 Western blot assay | fission_yeast_phenotype | 1912 Western blot evidence | gene_ex | 345 Western blot evidence | fission_yeast_phenotype | 1 (104 rows) total: count -------- 191150 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1105 | PSI-MOD 1230 | molecular_function 1731 | cellular_component 2216 | biological_process 14372 | PomBase annotation extension terms 20756 | fission_yeast_phenotype (6 rows) total ------- 41410 (1 row)