Running check: PomBase::Check::DuplicateInteractions
Running check: PomBase::Check::FeatureCount
pombe_genes - SUCCESS
enough_isa_cvterm_rels - SUCCESS
no_duplicate_pombe_gene_names - FAILURE:  expected 0 but got 2
  2 mat3-Mm
  2 mat3-Mc
all alleles should be instance_of gene - SUCCESS
no population term should have a has_penetrance relation - FAILURE:  expected 0 but got 6
  [null] f1afdd21aae916be-genotype-1 abnormal mitotic cell cycle arrest with unreplicated DNA [has_penetrance] medium PMID:8887552
  [null] c22385c0fd392e28-genotype-3 abnormal mitotic cell cycle arrest with unreplicated DNA [has_penetrance] medium PMID:10648609
  [null] bdeb75b22f017c39-genotype-3 abnormal mitotic cell cycle arrest with unreplicated DNA [has_penetrance] medium PMID:11252721
  [null] bdeb75b22f017c39-genotype-2 abnormal mitotic cell cycle arrest with unreplicated DNA [has_penetrance] medium PMID:11252721
  [null] bdeb75b22f017c39-genotype-1 abnormal mitotic cell cycle arrest with unreplicated DNA [has_penetrance] medium PMID:11252721
  [null] 9ef4b740616f8870-genotype-1 inviable vegetative cell population [has_penetrPomBase::Check::_do_query_checks(): DBI Exception: DBD::Pg::st execute failed: ERROR:  syntax error at or near ";"
LINE 9: ...e) <> length(regexp_replace(name, '[^\x01-\x7f]', '', 'g'));
                                                                      ^ [for Statement "select count(*) from (SELECT uniquename,
       name,
  (SELECT value
   FROM featureprop p
   JOIN cvterm pt ON pt.cvterm_id = p.type_id
   WHERE p.feature_id = f.feature_id
     AND pt.name = 'canto_session') AS session
FROM feature f
WHERE length(name) <> length(regexp_replace(name, '[^\x01-\x7f]', '', 'g'));
) as sub"] at /home/FILESERVER5/pombase/kmr44/git/pombase-chado/lib/PomBase/Check.pm line 143
ance] complete PMID:9398669
check for annotations from Canto - SUCCESS
check that we have enough annotations - SUCCESS
check that all quantitative annotation have a count qualifier - SUCCESS
check that protein binding annotations have two assayed_using extensions - SUCCESS
don't store the same ortholog twice - SUCCESS
enough_genetic_interactions - SUCCESS
enough_physical_interactions - SUCCESS
Check for non-ascii characters in feature names -