counts of all annotation by type: count | cv_name -------+-------------------------------------- 4 | DNA_binding_specificity 5 | external_link 21 | ex_tools 28 | cat_act 30 | pathway 89 | m_f_g 174 | subunit_composition 232 | genome_org 352 | complementation 368 | misc 839 | EC numbers 886 | name_description 951 | sequence 1031 | disease_associated 1634 | warning 1858 | PomBase family or domain 5138 | PomBase gene characterisation status 6989 | PomBase gene products 10945 | molecular_function 11110 | biological_process 16777 | cellular_component 24564 | species_dist 28313 | PSI-MOD 36937 | gene_ex 61688 | fission_yeast_phenotype (25 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Expression Pattern | biological_process | 53 Inferred from Experiment | biological_process | 74 Inferred from Physical Interaction | biological_process | 97 Inferred from Direct Assay | biological_process | 660 Inferred from Sequence or Structural Similarity | biological_process | 624 Inferred from Electronic Annotation | biological_process | 733 Non-traceable Author Statement | biological_process | 448 Inferred from Mutant Phenotype | biological_process | 3608 Inferred from Sequence Orthology | biological_process | 2668 Inferred from Genetic Interaction | biological_process | 689 Inferred by Curator | biological_process | 1112 Inferred from Genomic Context | biological_process | 1 Inferred from Sequence Model | biological_process | 173 Traceable Author Statement | biological_process | 170 inferred from Reviewed Computational Analysis | cellular_component | 4 Inferred by Curator | cellular_component | 553 Inferred from Sequence Orthology | cellular_component | 2442 Inferred from Direct Assay | cellular_component | 11259 Inferred from Genetic Interaction | cellular_component | 50 Traceable Author Statement | cellular_component | 104 Inferred from Experiment | cellular_component | 52 Inferred from Physical Interaction | cellular_component | 137 Inferred from Sequence Model | cellular_component | 60 Inferred from Sequence or Structural Similarity | cellular_component | 653 Inferred from Mutant Phenotype | cellular_component | 64 Non-traceable Author Statement | cellular_component | 278 Inferred from Electronic Annotation | cellular_component | 1121 Non-traceable Author Statement | complementation | 1 Other | fission_yeast_phenotype | 1039 Flow cytometry data | fission_yeast_phenotype | 829 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 9 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 8 Enzyme assay data | fission_yeast_phenotype | 1369 Transcript expression level evidence | fission_yeast_phenotype | 2201 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Cell growth assay | fission_yeast_phenotype | 20350 experimental phenotypic evidence | fission_yeast_phenotype | 493 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 694 ECO:0000095 | fission_yeast_phenotype | 138 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 1541 competitive growth assay evidence | fission_yeast_phenotype | 497 Western blot assay | fission_yeast_phenotype | 2186 Northern assay evidence | fission_yeast_phenotype | 125 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 107 Reporter gene assay | fission_yeast_phenotype | 1322 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Other direct assay | fission_yeast_phenotype | 9 Microscopy | fission_yeast_phenotype | 26844 Substance quantification | fission_yeast_phenotype | 117 quantitative PCR | fission_yeast_phenotype | 260 Substance quantification evidence | fission_yeast_phenotype | 680 Plasmid maintenance assay evidence | fission_yeast_phenotype | 69 Chromatography evidence | fission_yeast_phenotype | 41 Co-immunoprecipitation experiment | fission_yeast_phenotype | 344 Western blot evidence | fission_yeast_phenotype | 1 fusion protein localization evidence | gene_ex | 10 transcript expression level evidence | gene_ex | 10 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 23 in situ hybridization assay evidence | gene_ex | 14 Western blot evidence | gene_ex | 359 quantitative PCR | gene_ex | 77 expression microarray evidence | gene_ex | 1438 mass spectrometry evidence | gene_ex | 13682 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Northern assay evidence | gene_ex | 759 reporter gene assay evidence | gene_ex | 143 experimental evidence | gene_ex | 20342 immunofluorescence evidence | gene_ex | 6 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1557 Inferred from Sequence Model | molecular_function | 650 Inferred by Curator | molecular_function | 141 Inferred from Sequence Orthology | molecular_function | 1551 Non-traceable Author Statement | molecular_function | 232 Inferred from Mutant Phenotype | molecular_function | 2072 Inferred from Electronic Annotation | molecular_function | 2410 Inferred from Sequence or Structural Similarity | molecular_function | 523 Traceable Author Statement | molecular_function | 117 Inferred from Physical Interaction | molecular_function | 1519 Inferred from Experiment | molecular_function | 43 Inferred from Genetic Interaction | molecular_function | 129 Inferred from Key Residues | molecular_function | 1 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PSI-MOD | 102 experimental evidence | PSI-MOD | 8141 Inferred from Sequence Model | PSI-MOD | 2 Traceable Author Statement | PSI-MOD | 1 mass spectrometry evidence | PSI-MOD | 1173 Inferred from Direct Assay | PSI-MOD | 18827 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | sequence | 7 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (105 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Genomic Context | biological_process | 1 Inferred from Key Residues | molecular_function | 1 Traceable Author Statement | PSI-MOD | 1 Western blot evidence | fission_yeast_phenotype | 1 Inferred from Sequence or Structural Similarity | misc | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | misc | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Traceable Author Statement | sequence | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | sequence | 3 inferred from Reviewed Computational Analysis | cellular_component | 4 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 8 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 9 Immunolocalization experiment data | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 transcript expression level evidence | gene_ex | 10 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 22 RNA protection assay evidence | gene_ex | 23 Chromatography evidence | fission_yeast_phenotype | 41 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Experiment | molecular_function | 43 Inferred from Genetic Interaction | cellular_component | 50 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Inferred from Experiment | cellular_component | 52 Inferred from Expression Pattern | biological_process | 53 Inferred from Sequence Model | cellular_component | 60 Inferred from Mutant Phenotype | cellular_component | 64 Plasmid maintenance assay evidence | fission_yeast_phenotype | 69 Inferred from Experiment | biological_process | 74 quantitative PCR | gene_ex | 77 Inferred from Physical Interaction | biological_process | 97 Inferred from Sequence or Structural Similarity | PSI-MOD | 102 Inferred from Sequence or Structural Similarity | warning | 102 Traceable Author Statement | cellular_component | 104 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 107 Substance quantification | fission_yeast_phenotype | 117 Traceable Author Statement | molecular_function | 117 Northern assay evidence | fission_yeast_phenotype | 125 Inferred from Genetic Interaction | molecular_function | 129 Inferred from Physical Interaction | cellular_component | 137 ECO:0000095 | fission_yeast_phenotype | 138 Inferred by Curator | molecular_function | 141 reporter gene assay evidence | gene_ex | 143 Traceable Author Statement | biological_process | 170 Inferred from Sequence Model | biological_process | 173 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Non-traceable Author Statement | molecular_function | 232 quantitative PCR | fission_yeast_phenotype | 260 Non-traceable Author Statement | cellular_component | 278 Co-immunoprecipitation experiment | fission_yeast_phenotype | 344 Inferred from Sequence or Structural Similarity | sequence | 356 Western blot evidence | gene_ex | 359 Non-traceable Author Statement | biological_process | 448 experimental phenotypic evidence | fission_yeast_phenotype | 493 competitive growth assay evidence | fission_yeast_phenotype | 497 Inferred from Sequence or Structural Similarity | molecular_function | 523 Inferred by Curator | cellular_component | 553 Inferred from Sequence or Structural Similarity | biological_process | 624 Inferred from Sequence Model | molecular_function | 650 Inferred from Sequence or Structural Similarity | cellular_component | 653 Inferred from Direct Assay | biological_process | 660 Substance quantification evidence | fission_yeast_phenotype | 680 Inferred from Genetic Interaction | biological_process | 689 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 694 Inferred from Electronic Annotation | biological_process | 733 Northern assay evidence | gene_ex | 759 Flow cytometry data | fission_yeast_phenotype | 829 Other | fission_yeast_phenotype | 1039 Inferred by Curator | biological_process | 1112 Inferred from Electronic Annotation | cellular_component | 1121 mass spectrometry evidence | PSI-MOD | 1173 Reporter gene assay | fission_yeast_phenotype | 1322 Enzyme assay data | fission_yeast_phenotype | 1369 expression microarray evidence | gene_ex | 1438 Inferred from Physical Interaction | molecular_function | 1519 gel electrophoresis evidence | fission_yeast_phenotype | 1541 Inferred from Sequence Orthology | molecular_function | 1551 Inferred from Direct Assay | molecular_function | 1557 Inferred from Mutant Phenotype | molecular_function | 2072 Western blot assay | fission_yeast_phenotype | 2186 Transcript expression level evidence | fission_yeast_phenotype | 2201 Inferred from Electronic Annotation | molecular_function | 2410 Inferred from Sequence Orthology | cellular_component | 2442 Inferred from Sequence Orthology | biological_process | 2668 Inferred from Mutant Phenotype | biological_process | 3608 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | cellular_component | 11259 mass spectrometry evidence | gene_ex | 13682 Inferred from Direct Assay | PSI-MOD | 18827 experimental evidence | gene_ex | 20342 Cell growth assay | fission_yeast_phenotype | 20350 Microscopy | fission_yeast_phenotype | 26844 (105 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 20350 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 694 Chromatography evidence | fission_yeast_phenotype | 41 Co-immunoprecipitation experiment | fission_yeast_phenotype | 344 competitive growth assay evidence | fission_yeast_phenotype | 497 ECO:0000095 | fission_yeast_phenotype | 138 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 107 Enzyme assay data | fission_yeast_phenotype | 1369 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 8 experimental evidence | gene_ex | 20342 experimental evidence | PSI-MOD | 8141 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1438 Flow cytometry data | fission_yeast_phenotype | 829 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 1541 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 9 Inferred by Curator | cellular_component | 553 Inferred by Curator | biological_process | 1112 Inferred by Curator | molecular_function | 141 Inferred from Direct Assay | cellular_component | 11259 Inferred from Direct Assay | PSI-MOD | 18827 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | biological_process | 660 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | molecular_function | 1557 Inferred from Electronic Annotation | molecular_function | 2410 Inferred from Electronic Annotation | cellular_component | 1121 Inferred from Electronic Annotation | biological_process | 733 Inferred from Experiment | cellular_component | 52 Inferred from Experiment | biological_process | 74 Inferred from Experiment | molecular_function | 43 Inferred from Expression Pattern | biological_process | 53 Inferred from Genetic Interaction | molecular_function | 129 Inferred from Genetic Interaction | cellular_component | 50 Inferred from Genetic Interaction | biological_process | 689 Inferred from Genomic Context | biological_process | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Mutant Phenotype | cellular_component | 64 Inferred from Mutant Phenotype | molecular_function | 2072 Inferred from Mutant Phenotype | biological_process | 3608 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | molecular_function | 1519 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | cellular_component | 137 Inferred from Physical Interaction | biological_process | 97 inferred from Reviewed Computational Analysis | cellular_component | 4 Inferred from Sequence Model | cellular_component | 60 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | molecular_function | 650 Inferred from Sequence Model | biological_process | 173 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | cellular_component | 653 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | PSI-MOD | 102 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence or Structural Similarity | sequence | 356 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | molecular_function | 523 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 624 Inferred from Sequence Orthology | molecular_function | 1551 Inferred from Sequence Orthology | cellular_component | 2442 Inferred from Sequence Orthology | biological_process | 2668 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | PSI-MOD | 1173 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 26844 Non-traceable Author Statement | biological_process | 448 Non-traceable Author Statement | cellular_component | 278 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 232 Northern assay evidence | gene_ex | 759 Northern assay evidence | fission_yeast_phenotype | 125 Other | fission_yeast_phenotype | 1039 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 69 quantitative PCR | gene_ex | 77 quantitative PCR | fission_yeast_phenotype | 260 Reporter gene assay | fission_yeast_phenotype | 1322 reporter gene assay evidence | gene_ex | 143 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 23 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 117 Substance quantification evidence | fission_yeast_phenotype | 680 Traceable Author Statement | cellular_component | 104 Traceable Author Statement | biological_process | 170 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | molecular_function | 117 transcript expression level evidence | gene_ex | 10 Transcript expression level evidence | fission_yeast_phenotype | 2201 Western blot assay | fission_yeast_phenotype | 2186 Western blot evidence | fission_yeast_phenotype | 1 Western blot evidence | gene_ex | 359 (105 rows) total: count -------- 210963 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1132 | PSI-MOD 1392 | molecular_function 1909 | cellular_component 2365 | biological_process 16268 | PomBase annotation extension terms 22805 | fission_yeast_phenotype (6 rows) total ------- 45871 (1 row)