counts of all annotation by type: count | cv_name -------+-------------------------------------- 4 | DNA_binding_specificity 5 | external_link 21 | ex_tools 28 | cat_act 30 | pathway 89 | m_f_g 175 | subunit_composition 234 | genome_org 374 | misc 382 | complementation 838 | EC numbers 906 | name_description 953 | sequence 1044 | disease_associated 1639 | warning 1855 | PomBase family or domain 5138 | PomBase gene characterisation status 6988 | PomBase gene products 10752 | biological_process 11046 | molecular_function 16926 | cellular_component 24660 | species_dist 28400 | PSI-MOD 36962 | gene_ex 64834 | fission_yeast_phenotype (25 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence Orthology | biological_process | 2624 Non-traceable Author Statement | biological_process | 392 Inferred from Sequence or Structural Similarity | biological_process | 607 Inferred from Mutant Phenotype | biological_process | 3616 Inferred from Genomic Context | biological_process | 1 Inferred from Direct Assay | biological_process | 601 Inferred from Physical Interaction | biological_process | 96 Inferred from Experiment | biological_process | 107 Inferred from Genetic Interaction | biological_process | 659 Inferred from Sequence Model | biological_process | 109 Inferred by Curator | biological_process | 1056 Inferred from Expression Pattern | biological_process | 52 Inferred from Electronic Annotation | biological_process | 674 Traceable Author Statement | biological_process | 158 Inferred from Sequence Orthology | cellular_component | 2446 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Direct Assay | cellular_component | 11370 Non-traceable Author Statement | cellular_component | 302 Inferred from Mutant Phenotype | cellular_component | 72 Inferred from Electronic Annotation | cellular_component | 1107 Inferred from Sequence or Structural Similarity | cellular_component | 648 Inferred from Sequence Model | cellular_component | 63 Inferred from Physical Interaction | cellular_component | 142 Inferred from Experiment | cellular_component | 96 Inferred by Curator | cellular_component | 527 Traceable Author Statement | cellular_component | 100 inferred from Reviewed Computational Analysis | cellular_component | 4 Non-traceable Author Statement | complementation | 1 Cell growth assay | fission_yeast_phenotype | 21558 Other direct assay | fission_yeast_phenotype | 7 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Western blot assay | fission_yeast_phenotype | 2372 Transcript expression level evidence | fission_yeast_phenotype | 2353 competitive growth assay evidence | fission_yeast_phenotype | 713 Chromatography evidence | fission_yeast_phenotype | 41 cell growth assay evidence | fission_yeast_phenotype | 180 Western blot evidence | fission_yeast_phenotype | 1 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 9 gel electrophoresis evidence | fission_yeast_phenotype | 1564 Reporter gene assay | fission_yeast_phenotype | 1450 Plasmid maintenance assay evidence | fission_yeast_phenotype | 75 Flow cytometry data | fission_yeast_phenotype | 852 Enzyme assay data | fission_yeast_phenotype | 1419 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 774 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Microscopy | fission_yeast_phenotype | 27672 quantitative PCR | fission_yeast_phenotype | 318 Northern assay evidence | fission_yeast_phenotype | 124 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 107 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 9 Substance quantification | fission_yeast_phenotype | 117 experimental phenotypic evidence | fission_yeast_phenotype | 493 Other | fission_yeast_phenotype | 1101 Substance quantification evidence | fission_yeast_phenotype | 715 Co-immunoprecipitation experiment | fission_yeast_phenotype | 399 in situ hybridization assay evidence | gene_ex | 14 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 reporter gene assay evidence | gene_ex | 143 transcript expression level evidence | gene_ex | 11 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Western blot evidence | gene_ex | 376 RNA protection assay evidence | gene_ex | 25 mass spectrometry evidence | gene_ex | 13682 Northern assay evidence | gene_ex | 763 experimental evidence | gene_ex | 20340 quantitative PCR | gene_ex | 80 expression microarray evidence | gene_ex | 1438 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | molecular_function | 1638 Inferred from Key Residues | molecular_function | 1 Inferred from Electronic Annotation | molecular_function | 2344 Inferred from Sequence or Structural Similarity | molecular_function | 522 Inferred from Genetic Interaction | molecular_function | 129 Inferred by Curator | molecular_function | 106 Inferred from Direct Assay | molecular_function | 1577 Inferred from Sequence Orthology | molecular_function | 1559 Non-traceable Author Statement | molecular_function | 225 Inferred from Sequence Model | molecular_function | 673 Inferred from Mutant Phenotype | molecular_function | 2102 Traceable Author Statement | molecular_function | 120 Inferred from Experiment | molecular_function | 50 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence Model | PSI-MOD | 2 Traceable Author Statement | PSI-MOD | 1 mass spectrometry evidence | PSI-MOD | 1173 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | PSI-MOD | 18914 Inferred from Sequence or Structural Similarity | PSI-MOD | 102 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | sequence | 7 Traceable Author Statement | sequence | 2 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | warning | 102 (105 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Genomic Context | biological_process | 1 Western blot evidence | fission_yeast_phenotype | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Traceable Author Statement | sequence | 2 Inferred from Physical Interaction | misc | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 3 inferred from Reviewed Computational Analysis | cellular_component | 4 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Other direct assay | fission_yeast_phenotype | 7 Inferred from Mutant Phenotype | sequence | 7 Particle size and count assay | fission_yeast_phenotype | 9 Immunolocalization experiment data | fission_yeast_phenotype | 9 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 transcript expression level evidence | gene_ex | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 22 RNA protection assay evidence | gene_ex | 25 Chromatography evidence | fission_yeast_phenotype | 41 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Experiment | molecular_function | 50 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 Inferred from Expression Pattern | biological_process | 52 Inferred from Sequence Model | cellular_component | 63 Inferred from Mutant Phenotype | cellular_component | 72 Plasmid maintenance assay evidence | fission_yeast_phenotype | 75 quantitative PCR | gene_ex | 80 Inferred from Physical Interaction | biological_process | 96 Inferred from Experiment | cellular_component | 96 Traceable Author Statement | cellular_component | 100 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence or Structural Similarity | PSI-MOD | 102 Inferred by Curator | molecular_function | 106 Inferred from Experiment | biological_process | 107 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 107 Inferred from Sequence Model | biological_process | 109 Substance quantification | fission_yeast_phenotype | 117 Traceable Author Statement | molecular_function | 120 Northern assay evidence | fission_yeast_phenotype | 124 Inferred from Genetic Interaction | molecular_function | 129 Inferred from Physical Interaction | cellular_component | 142 reporter gene assay evidence | gene_ex | 143 Traceable Author Statement | biological_process | 158 cell growth assay evidence | fission_yeast_phenotype | 180 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Non-traceable Author Statement | molecular_function | 225 Non-traceable Author Statement | cellular_component | 302 quantitative PCR | fission_yeast_phenotype | 318 Inferred from Sequence or Structural Similarity | sequence | 355 Western blot evidence | gene_ex | 376 Non-traceable Author Statement | biological_process | 392 Co-immunoprecipitation experiment | fission_yeast_phenotype | 399 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Sequence or Structural Similarity | molecular_function | 522 Inferred by Curator | cellular_component | 527 Inferred from Direct Assay | biological_process | 601 Inferred from Sequence or Structural Similarity | biological_process | 607 Inferred from Sequence or Structural Similarity | cellular_component | 648 Inferred from Genetic Interaction | biological_process | 659 Inferred from Sequence Model | molecular_function | 673 Inferred from Electronic Annotation | biological_process | 674 competitive growth assay evidence | fission_yeast_phenotype | 713 Substance quantification evidence | fission_yeast_phenotype | 715 Northern assay evidence | gene_ex | 763 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 774 Flow cytometry data | fission_yeast_phenotype | 852 Inferred by Curator | biological_process | 1056 Other | fission_yeast_phenotype | 1101 Inferred from Electronic Annotation | cellular_component | 1107 mass spectrometry evidence | PSI-MOD | 1173 Enzyme assay data | fission_yeast_phenotype | 1419 expression microarray evidence | gene_ex | 1438 Reporter gene assay | fission_yeast_phenotype | 1450 Inferred from Sequence Orthology | molecular_function | 1559 gel electrophoresis evidence | fission_yeast_phenotype | 1564 Inferred from Direct Assay | molecular_function | 1577 Inferred from Physical Interaction | molecular_function | 1638 Inferred from Mutant Phenotype | molecular_function | 2102 Inferred from Electronic Annotation | molecular_function | 2344 Transcript expression level evidence | fission_yeast_phenotype | 2353 Western blot assay | fission_yeast_phenotype | 2372 Inferred from Sequence Orthology | cellular_component | 2446 Inferred from Sequence Orthology | biological_process | 2624 Inferred from Mutant Phenotype | biological_process | 3616 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | cellular_component | 11370 mass spectrometry evidence | gene_ex | 13682 Inferred from Direct Assay | PSI-MOD | 18914 experimental evidence | gene_ex | 20340 Cell growth assay | fission_yeast_phenotype | 21558 Microscopy | fission_yeast_phenotype | 27672 (105 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Cell growth assay | fission_yeast_phenotype | 21558 cell growth assay evidence | fission_yeast_phenotype | 180 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 774 Chromatography evidence | fission_yeast_phenotype | 41 Co-immunoprecipitation experiment | fission_yeast_phenotype | 399 competitive growth assay evidence | fission_yeast_phenotype | 713 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 107 Enzyme assay data | fission_yeast_phenotype | 1419 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 9 experimental evidence | PSI-MOD | 8141 experimental evidence | gene_ex | 20340 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1438 Flow cytometry data | fission_yeast_phenotype | 852 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 1564 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 9 Inferred by Curator | molecular_function | 106 Inferred by Curator | biological_process | 1056 Inferred by Curator | cellular_component | 527 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | cellular_component | 11370 Inferred from Direct Assay | PSI-MOD | 18914 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | biological_process | 601 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | molecular_function | 1577 Inferred from Electronic Annotation | molecular_function | 2344 Inferred from Electronic Annotation | cellular_component | 1107 Inferred from Electronic Annotation | biological_process | 674 Inferred from Experiment | molecular_function | 50 Inferred from Experiment | biological_process | 107 Inferred from Experiment | cellular_component | 96 Inferred from Expression Pattern | biological_process | 52 Inferred from Genetic Interaction | biological_process | 659 Inferred from Genetic Interaction | molecular_function | 129 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Genomic Context | biological_process | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | cellular_component | 72 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 2102 Inferred from Mutant Phenotype | biological_process | 3616 Inferred from Physical Interaction | molecular_function | 1638 Inferred from Physical Interaction | cellular_component | 142 Inferred from Physical Interaction | biological_process | 96 Inferred from Physical Interaction | misc | 2 inferred from Reviewed Computational Analysis | cellular_component | 4 Inferred from Sequence Model | molecular_function | 673 Inferred from Sequence Model | biological_process | 109 Inferred from Sequence Model | cellular_component | 63 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | cellular_component | 648 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | PSI-MOD | 102 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | molecular_function | 522 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | biological_process | 607 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence Orthology | cellular_component | 2446 Inferred from Sequence Orthology | biological_process | 2624 Inferred from Sequence Orthology | molecular_function | 1559 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 mass spectrometry evidence | PSI-MOD | 1173 Microscopy | fission_yeast_phenotype | 27672 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 225 Non-traceable Author Statement | biological_process | 392 Non-traceable Author Statement | cellular_component | 302 Northern assay evidence | fission_yeast_phenotype | 124 Northern assay evidence | gene_ex | 763 Other | fission_yeast_phenotype | 1101 Other direct assay | fission_yeast_phenotype | 7 Particle size and count assay | fission_yeast_phenotype | 9 Plasmid maintenance assay evidence | fission_yeast_phenotype | 75 quantitative PCR | fission_yeast_phenotype | 318 quantitative PCR | gene_ex | 80 Reporter gene assay | fission_yeast_phenotype | 1450 reporter gene assay evidence | gene_ex | 143 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 51 RNA protection assay evidence | gene_ex | 25 Sodium dodecyl sulfate polyacrylamide gel electrophoresis | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 117 Substance quantification evidence | fission_yeast_phenotype | 715 Traceable Author Statement | biological_process | 158 Traceable Author Statement | cellular_component | 100 Traceable Author Statement | molecular_function | 120 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 Traceable Author Statement | PomBase family or domain | 5 transcript expression level evidence | gene_ex | 11 Transcript expression level evidence | fission_yeast_phenotype | 2353 Western blot assay | fission_yeast_phenotype | 2372 Western blot evidence | gene_ex | 376 Western blot evidence | fission_yeast_phenotype | 1 (105 rows) total: count -------- 214283 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1152 | PSI-MOD 1533 | molecular_function 2002 | cellular_component 2462 | biological_process 18015 | PomBase annotation extension terms 24255 | fission_yeast_phenotype (6 rows) total ------- 49419 (1 row)