counts of all annotation by type: count | cv_name -------+-------------------------------------- 5 | external_link 21 | ex_tools 29 | cat_act 30 | pathway 89 | m_f_g 180 | subunit_composition 237 | genome_org 386 | misc 405 | complementation 835 | EC numbers 935 | name_description 953 | sequence 1080 | disease_associated 1729 | warning 1869 | PomBase family or domain 5138 | PomBase gene characterisation status 10399 | molecular_function 10970 | biological_process 16876 | cellular_component 24992 | species_dist 26134 | PSI-MOD 37037 | gene_ex 56072 | PomBase gene products 72974 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | biological_process | 653 Traceable Author Statement | biological_process | 149 Inferred from Sequence Model | biological_process | 148 Inferred from Mutant Phenotype | biological_process | 3812 Inferred by Curator | biological_process | 1111 Inferred from Expression Pattern | biological_process | 32 Inferred from Genetic Interaction | biological_process | 651 Inferred from Electronic Annotation | biological_process | 553 Inferred from Physical Interaction | biological_process | 101 Inferred from Experiment | biological_process | 141 Non-traceable Author Statement | biological_process | 350 Inferred from Direct Assay | biological_process | 654 Inferred from Sequence Orthology | biological_process | 2615 Traceable Author Statement | cellular_component | 88 Inferred from Sequence or Structural Similarity | cellular_component | 675 Inferred from Electronic Annotation | cellular_component | 1021 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Direct Assay | cellular_component | 4603 Non-traceable Author Statement | cellular_component | 202 Inferred from Mutant Phenotype | cellular_component | 41 Inferred by Curator | cellular_component | 537 inferred from Reviewed Computational Analysis | cellular_component | 3 Inferred from Sequence Orthology | cellular_component | 2443 Inferred from high throughput direct assay | cellular_component | 6813 Inferred from Sequence Model | cellular_component | 66 Inferred from Physical Interaction | cellular_component | 222 Inferred from Experiment | cellular_component | 113 Non-traceable Author Statement | complementation | 1 experimental phenotypic evidence | fission_yeast_phenotype | 493 Other direct assay | fission_yeast_phenotype | 9 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Western blot assay | fission_yeast_phenotype | 2765 transcript expression level evidence | fission_yeast_phenotype | 2607 competitive growth assay evidence | fission_yeast_phenotype | 713 Chromatography evidence | fission_yeast_phenotype | 52 cell growth assay evidence | fission_yeast_phenotype | 24702 Western blot evidence | fission_yeast_phenotype | 1 Immunolocalization experiment data | fission_yeast_phenotype | 10 Particle size and count assay | fission_yeast_phenotype | 15 gel electrophoresis evidence | fission_yeast_phenotype | 1923 reporter gene assay evidence | fission_yeast_phenotype | 1765 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Flow cytometry data | fission_yeast_phenotype | 937 Enzyme assay data | fission_yeast_phenotype | 1527 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 931 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Microscopy | fission_yeast_phenotype | 30836 quantitative PCR | fission_yeast_phenotype | 333 Northern assay evidence | fission_yeast_phenotype | 118 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 109 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 10 Substance quantification | fission_yeast_phenotype | 900 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Other | fission_yeast_phenotype | 1344 Substance quantification evidence | fission_yeast_phenotype | 1 Co-immunoprecipitation experiment | fission_yeast_phenotype | 564 experimental evidence | gene_ex | 20341 mass spectrometry evidence | gene_ex | 13688 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 reporter gene assay evidence | gene_ex | 144 northern assay evidence used in manual assertion | gene_ex | 2 transcript expression level evidence | gene_ex | 11 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 Western blot evidence | gene_ex | 407 RNA protection assay evidence | gene_ex | 25 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 Northern assay evidence | gene_ex | 781 quantitative PCR | gene_ex | 81 western blot evidence used in manual assertion | gene_ex | 14 expression microarray evidence | gene_ex | 1438 fusion protein localization evidence | gene_ex | 10 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | misc | 2 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence Model | molecular_function | 765 Inferred from Electronic Annotation | molecular_function | 2304 Inferred from Genetic Interaction | molecular_function | 135 Inferred by Curator | molecular_function | 108 Inferred from Sequence Orthology | molecular_function | 1571 Traceable Author Statement | molecular_function | 118 Inferred from Direct Assay | molecular_function | 1667 Inferred from Sequence or Structural Similarity | molecular_function | 530 Inferred from Physical Interaction | molecular_function | 2111 Non-traceable Author Statement | molecular_function | 215 Inferred from Mutant Phenotype | molecular_function | 601 Inferred from Experiment | molecular_function | 273 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 mass spectrometry evidence | PSI-MOD | 1173 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | PSI-MOD | 16316 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 experimental evidence | PSI-MOD | 8476 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Direct Assay | sequence | 3 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Mutant Phenotype | sequence | 7 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (106 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Key Residues | molecular_function | 1 Western blot evidence | fission_yeast_phenotype | 1 Non-traceable Author Statement | complementation | 1 Substance quantification evidence | fission_yeast_phenotype | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | misc | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence Model | PSI-MOD | 2 northern assay evidence used in manual assertion | gene_ex | 2 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 3 inferred from Reviewed Computational Analysis | cellular_component | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 Immunolocalization experiment data | fission_yeast_phenotype | 10 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 10 transcript expression level evidence | gene_ex | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 western blot evidence used in manual assertion | gene_ex | 14 Particle size and count assay | fission_yeast_phenotype | 15 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 RNA protection assay evidence | gene_ex | 25 Inferred from Expression Pattern | biological_process | 32 Inferred from Mutant Phenotype | cellular_component | 41 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 49 Chromatography evidence | fission_yeast_phenotype | 52 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 Inferred from Sequence Model | cellular_component | 66 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | gene_ex | 81 Traceable Author Statement | cellular_component | 88 Inferred from Physical Interaction | biological_process | 101 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 102 Inferred by Curator | molecular_function | 108 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 109 Inferred from Experiment | cellular_component | 113 Northern assay evidence | fission_yeast_phenotype | 118 Traceable Author Statement | molecular_function | 118 Inferred from Genetic Interaction | molecular_function | 135 Inferred from Experiment | biological_process | 141 reporter gene assay evidence | gene_ex | 144 Inferred from Sequence Model | biological_process | 148 Traceable Author Statement | biological_process | 149 Non-traceable Author Statement | cellular_component | 202 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Non-traceable Author Statement | molecular_function | 215 Inferred from Physical Interaction | cellular_component | 222 Inferred from Experiment | molecular_function | 273 quantitative PCR | fission_yeast_phenotype | 333 Non-traceable Author Statement | biological_process | 350 Inferred from Sequence or Structural Similarity | sequence | 355 Western blot evidence | gene_ex | 407 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Sequence or Structural Similarity | molecular_function | 530 Inferred by Curator | cellular_component | 537 Inferred from Electronic Annotation | biological_process | 553 Co-immunoprecipitation experiment | fission_yeast_phenotype | 564 Inferred from Mutant Phenotype | molecular_function | 601 Inferred from Genetic Interaction | biological_process | 651 Inferred from Sequence or Structural Similarity | biological_process | 653 Inferred from Direct Assay | biological_process | 654 Inferred from Sequence or Structural Similarity | cellular_component | 675 competitive growth assay evidence | fission_yeast_phenotype | 713 Inferred from Sequence Model | molecular_function | 765 Northern assay evidence | gene_ex | 781 Substance quantification | fission_yeast_phenotype | 900 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 931 Flow cytometry data | fission_yeast_phenotype | 937 Inferred from Electronic Annotation | cellular_component | 1021 Inferred by Curator | biological_process | 1111 mass spectrometry evidence | PSI-MOD | 1173 Other | fission_yeast_phenotype | 1344 expression microarray evidence | gene_ex | 1438 Enzyme assay data | fission_yeast_phenotype | 1527 Inferred from Sequence Orthology | molecular_function | 1571 Inferred from Direct Assay | molecular_function | 1667 reporter gene assay evidence | fission_yeast_phenotype | 1765 gel electrophoresis evidence | fission_yeast_phenotype | 1923 Inferred from Physical Interaction | molecular_function | 2111 Inferred from Electronic Annotation | molecular_function | 2304 Inferred from Sequence Orthology | cellular_component | 2443 transcript expression level evidence | fission_yeast_phenotype | 2607 Inferred from Sequence Orthology | biological_process | 2615 Western blot assay | fission_yeast_phenotype | 2765 Inferred from Mutant Phenotype | biological_process | 3812 Inferred from Direct Assay | cellular_component | 4603 Inferred from high throughput direct assay | cellular_component | 6813 experimental evidence | PSI-MOD | 8476 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16316 experimental evidence | gene_ex | 20341 cell growth assay evidence | fission_yeast_phenotype | 24702 Microscopy | fission_yeast_phenotype | 30836 (106 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- cell growth assay evidence | fission_yeast_phenotype | 24702 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 931 Chromatography evidence | fission_yeast_phenotype | 52 Co-immunoprecipitation experiment | fission_yeast_phenotype | 564 competitive growth assay evidence | fission_yeast_phenotype | 713 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 109 Enzyme assay data | fission_yeast_phenotype | 1527 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 10 experimental evidence | gene_ex | 20341 experimental evidence | PSI-MOD | 8476 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1438 Flow cytometry data | fission_yeast_phenotype | 937 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 1923 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 10 Inferred by Curator | biological_process | 1111 Inferred by Curator | cellular_component | 537 Inferred by Curator | molecular_function | 108 Inferred from Direct Assay | biological_process | 654 Inferred from Direct Assay | PSI-MOD | 16316 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | molecular_function | 1667 Inferred from Direct Assay | cellular_component | 4603 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | misc | 1 Inferred from Electronic Annotation | biological_process | 553 Inferred from Electronic Annotation | molecular_function | 2304 Inferred from Electronic Annotation | cellular_component | 1021 Inferred from Experiment | biological_process | 141 Inferred from Experiment | cellular_component | 113 Inferred from Experiment | molecular_function | 273 Inferred from Expression Pattern | biological_process | 32 Inferred from Genetic Interaction | molecular_function | 135 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Genetic Interaction | biological_process | 651 Inferred from high throughput direct assay | cellular_component | 6813 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | cellular_component | 41 Inferred from Mutant Phenotype | sequence | 7 Inferred from Mutant Phenotype | fission_yeast_phenotype | 2 Inferred from Mutant Phenotype | molecular_function | 601 Inferred from Mutant Phenotype | biological_process | 3812 Inferred from Physical Interaction | biological_process | 101 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | cellular_component | 222 Inferred from Physical Interaction | molecular_function | 2111 inferred from Reviewed Computational Analysis | cellular_component | 3 Inferred from Sequence Model | molecular_function | 765 Inferred from Sequence Model | cellular_component | 66 Inferred from Sequence Model | biological_process | 148 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence or Structural Similarity | molecular_function | 530 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | biological_process | 653 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | cellular_component | 675 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence Orthology | biological_process | 2615 Inferred from Sequence Orthology | cellular_component | 2443 Inferred from Sequence Orthology | molecular_function | 1571 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 mass spectrometry evidence | PSI-MOD | 1173 Microscopy | fission_yeast_phenotype | 30836 Non-traceable Author Statement | cellular_component | 202 Non-traceable Author Statement | biological_process | 350 Non-traceable Author Statement | molecular_function | 215 Non-traceable Author Statement | complementation | 1 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 781 northern assay evidence used in manual assertion | gene_ex | 2 Other | fission_yeast_phenotype | 1344 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 15 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | gene_ex | 81 quantitative PCR | fission_yeast_phenotype | 333 reporter gene assay evidence | gene_ex | 144 reporter gene assay evidence | fission_yeast_phenotype | 1765 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Substance quantification | fission_yeast_phenotype | 900 Substance quantification evidence | fission_yeast_phenotype | 1 Traceable Author Statement | sequence | 2 Traceable Author Statement | molecular_function | 118 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | cellular_component | 88 Traceable Author Statement | biological_process | 149 Traceable Author Statement | PomBase family or domain | 5 transcript expression level evidence | gene_ex | 11 transcript expression level evidence | fission_yeast_phenotype | 2607 Western blot assay | fission_yeast_phenotype | 2765 Western blot evidence | fission_yeast_phenotype | 1 Western blot evidence | gene_ex | 407 western blot evidence used in manual assertion | gene_ex | 14 (106 rows) total: count -------- 269375 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1180 | PSI-MOD 1844 | molecular_function 2298 | cellular_component 2859 | biological_process 19785 | PomBase annotation extension terms 27204 | fission_yeast_phenotype (6 rows) total ------- 55170 (1 row)