counts of all annotation by type:
count | cv_name
-------+--------------------------------------
5 | external_link
21 | ex_tools
29 | cat_act
30 | pathway
90 | m_f_g
180 | subunit_composition
237 | genome_org
386 | misc
406 | complementation
835 | EC numbers
936 | name_description
954 | sequence
1081 | disease_associated
1729 | warning
1870 | PomBase family or domain
5138 | PomBase gene characterisation status
11015 | biological_process
11991 | molecular_function
16991 | cellular_component
24992 | species_dist
26135 | PSI-MOD
37037 | gene_ex
56079 | PomBase gene products
73923 | fission_yeast_phenotype
(24 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Inferred by Curator | biological_process | 1112
Inferred from Direct Assay | biological_process | 665
Inferred from Electronic Annotation | biological_process | 582
Inferred from Experiment | biological_process | 141
Inferred from Expression Pattern | biological_process | 32
Inferred from Genetic Interaction | biological_process | 652
Inferred from high throughput direct assay | biological_process | 17
Inferred from Mutant Phenotype | biological_process | 3811
Inferred from Physical Interaction | biological_process | 101
Inferred from Sequence Model | biological_process | 153
Inferred from Sequence or Structural Similarity | biological_process | 653
Inferred from Sequence Orthology | biological_process | 2605
Non-traceable Author Statement | biological_process | 343
Traceable Author Statement | biological_process | 148
Inferred by Curator | cellular_component | 537
Inferred from Direct Assay | cellular_component | 4609
Inferred from Electronic Annotation | cellular_component | 1028
Inferred from Experiment | cellular_component | 113
Inferred from Genetic Interaction | cellular_component | 49
Inferred from high throughput direct assay | cellular_component | 6915
Inferred from Mutant Phenotype | cellular_component | 41
Inferred from Physical Interaction | cellular_component | 226
inferred from Reviewed Computational Analysis | cellular_component | 3
Inferred from Sequence Model | cellular_component | 66
Inferred from Sequence or Structural Similarity | cellular_component | 675
Inferred from Sequence Orthology | cellular_component | 2440
Non-traceable Author Statement | cellular_component | 202
Traceable Author Statement | cellular_component | 87
Non-traceable Author Statement | complementation | 1
cell growth assay evidence | fission_yeast_phenotype | 24827
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 940
Chromatography evidence | fission_yeast_phenotype | 52
Co-immunoprecipitation experiment | fission_yeast_phenotype | 597
competitive growth assay evidence | fission_yeast_phenotype | 713
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 109
Enzyme assay data | fission_yeast_phenotype | 1531
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 10
experimental phenotypic evidence | fission_yeast_phenotype | 493
Flow cytometry data | fission_yeast_phenotype | 937
gel electrophoresis evidence | fission_yeast_phenotype | 1925
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Immunolocalization experiment data | fission_yeast_phenotype | 10
Inferred from Mutant Phenotype | fission_yeast_phenotype | 2
Microscopy | fission_yeast_phenotype | 30869
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1344
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 15
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 387
reporter gene assay evidence | fission_yeast_phenotype | 1776
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Substance quantification | fission_yeast_phenotype | 901
transcript expression level evidence | fission_yeast_phenotype | 2614
Western blot assay | fission_yeast_phenotype | 2777
Western blot evidence | fission_yeast_phenotype | 1
experimental evidence | gene_ex | 20341
expression microarray evidence | gene_ex | 1438
fusion protein localization evidence | gene_ex | 10
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
Northern assay evidence | gene_ex | 781
northern assay evidence used in manual assertion | gene_ex | 2
quantitative PCR | gene_ex | 81
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
RNA protection assay evidence | gene_ex | 25
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | gene_ex | 11
Western blot evidence | gene_ex | 407
western blot evidence used in manual assertion | gene_ex | 14
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 110
Inferred from Direct Assay | molecular_function | 1680
Inferred from Electronic Annotation | molecular_function | 2355
Inferred from Experiment | molecular_function | 273
Inferred from Genetic Interaction | molecular_function | 135
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 602
Inferred from Physical Interaction | molecular_function | 2112
Inferred from Sequence Model | molecular_function | 744
Inferred from Sequence or Structural Similarity | molecular_function | 531
Inferred from Sequence Orthology | molecular_function | 1567
Non-traceable Author Statement | molecular_function | 214
Traceable Author Statement | molecular_function | 115
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
experimental evidence | PSI-MOD | 8476
Inferred from Direct Assay | PSI-MOD | 16317
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
mass spectrometry evidence | PSI-MOD | 1173
Traceable Author Statement | PSI-MOD | 1
Inferred from Direct Assay | sequence | 3
Inferred from Mutant Phenotype | sequence | 7
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 3
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
(109 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Direct Assay | misc | 1
Non-traceable Author Statement | complementation | 1
Inferred from Key Residues | molecular_function | 1
Western blot evidence | fission_yeast_phenotype | 1
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Physical Interaction | misc | 2
Inferred from Sequence Model | PSI-MOD | 2
northern assay evidence used in manual assertion | gene_ex | 2
Traceable Author Statement | sequence | 2
Inferred from Mutant Phenotype | fission_yeast_phenotype | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Inferred from Direct Assay | sequence | 3
Inferred from Direct Assay | subunit_composition | 3
inferred from Reviewed Computational Analysis | cellular_component | 3
Inferred from Mutant Phenotype | misc | 4
Traceable Author Statement | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
Inferred from Mutant Phenotype | sequence | 7
Other direct assay | fission_yeast_phenotype | 9
Immunolocalization experiment data | fission_yeast_phenotype | 10
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 10
fusion protein localization evidence | gene_ex | 10
transcript expression level evidence | gene_ex | 11
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
western blot evidence used in manual assertion | gene_ex | 14
Particle size and count assay | fission_yeast_phenotype | 15
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | molecular_function | 17
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
RNA protection assay evidence | gene_ex | 25
Inferred from Expression Pattern | biological_process | 32
Inferred from Mutant Phenotype | cellular_component | 41
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Genetic Interaction | cellular_component | 49
Chromatography evidence | fission_yeast_phenotype | 52
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
Inferred from Sequence Model | cellular_component | 66
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | gene_ex | 81
Traceable Author Statement | cellular_component | 87
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Physical Interaction | biological_process | 101
Inferred from Sequence or Structural Similarity | warning | 102
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 109
Inferred by Curator | molecular_function | 110
Inferred from Experiment | cellular_component | 113
Traceable Author Statement | molecular_function | 115
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 135
Inferred from Experiment | biological_process | 141
reporter gene assay evidence | gene_ex | 144
Traceable Author Statement | biological_process | 148
Inferred from Sequence Model | biological_process | 153
Non-traceable Author Statement | cellular_component | 202
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Non-traceable Author Statement | molecular_function | 214
Inferred from Physical Interaction | cellular_component | 226
Inferred from Experiment | molecular_function | 273
Non-traceable Author Statement | biological_process | 343
Inferred from Sequence or Structural Similarity | sequence | 355
quantitative PCR | fission_yeast_phenotype | 387
Western blot evidence | gene_ex | 407
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Sequence or Structural Similarity | molecular_function | 531
Inferred by Curator | cellular_component | 537
Inferred from Electronic Annotation | biological_process | 582
Co-immunoprecipitation experiment | fission_yeast_phenotype | 597
Inferred from Mutant Phenotype | molecular_function | 602
Inferred from Genetic Interaction | biological_process | 652
Inferred from Sequence or Structural Similarity | biological_process | 653
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
Inferred from Direct Assay | biological_process | 665
Inferred from Sequence or Structural Similarity | cellular_component | 675
competitive growth assay evidence | fission_yeast_phenotype | 713
Inferred from Sequence Model | molecular_function | 744
Northern assay evidence | gene_ex | 781
Substance quantification | fission_yeast_phenotype | 901
Flow cytometry data | fission_yeast_phenotype | 937
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 940
Inferred from Electronic Annotation | cellular_component | 1028
Inferred by Curator | biological_process | 1112
mass spectrometry evidence | PSI-MOD | 1173
Other | fission_yeast_phenotype | 1344
expression microarray evidence | gene_ex | 1438
Enzyme assay data | fission_yeast_phenotype | 1531
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Sequence Orthology | molecular_function | 1567
Inferred from Direct Assay | molecular_function | 1680
reporter gene assay evidence | fission_yeast_phenotype | 1776
gel electrophoresis evidence | fission_yeast_phenotype | 1925
Inferred from Physical Interaction | molecular_function | 2112
Inferred from Electronic Annotation | molecular_function | 2355
Inferred from Sequence Orthology | cellular_component | 2440
Inferred from Sequence Orthology | biological_process | 2605
transcript expression level evidence | fission_yeast_phenotype | 2614
Western blot assay | fission_yeast_phenotype | 2777
Inferred from Mutant Phenotype | biological_process | 3811
Inferred from Direct Assay | cellular_component | 4609
Inferred from high throughput direct assay | cellular_component | 6915
experimental evidence | PSI-MOD | 8476
mass spectrometry evidence | gene_ex | 13688
Inferred from Direct Assay | PSI-MOD | 16317
experimental evidence | gene_ex | 20341
cell growth assay evidence | fission_yeast_phenotype | 24827
Microscopy | fission_yeast_phenotype | 30869
(109 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
------------------------------------------------------------------------+--------------------------+-------
cell growth assay evidence | fission_yeast_phenotype | 24827
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 940
Chromatography evidence | fission_yeast_phenotype | 52
Co-immunoprecipitation experiment | fission_yeast_phenotype | 597
competitive growth assay evidence | fission_yeast_phenotype | 713
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 109
Enzyme assay data | fission_yeast_phenotype | 1531
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 10
experimental evidence | gene_ex | 20341
experimental evidence | PSI-MOD | 8476
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 1438
Flow cytometry data | fission_yeast_phenotype | 937
fusion protein localization evidence | gene_ex | 10
gel electrophoresis evidence | fission_yeast_phenotype | 1925
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
Immunolocalization experiment data | fission_yeast_phenotype | 10
Inferred by Curator | biological_process | 1112
Inferred by Curator | cellular_component | 537
Inferred by Curator | molecular_function | 110
Inferred from Direct Assay | biological_process | 665
Inferred from Direct Assay | cellular_component | 4609
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1680
Inferred from Direct Assay | PSI-MOD | 16317
Inferred from Direct Assay | sequence | 3
Inferred from Direct Assay | subunit_composition | 3
Inferred from Electronic Annotation | biological_process | 582
Inferred from Electronic Annotation | cellular_component | 1028
Inferred from Electronic Annotation | molecular_function | 2355
Inferred from Experiment | biological_process | 141
Inferred from Experiment | cellular_component | 113
Inferred from Experiment | molecular_function | 273
Inferred from Expression Pattern | biological_process | 32
Inferred from Genetic Interaction | biological_process | 652
Inferred from Genetic Interaction | cellular_component | 49
Inferred from Genetic Interaction | molecular_function | 135
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6915
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | biological_process | 3811
Inferred from Mutant Phenotype | cellular_component | 41
Inferred from Mutant Phenotype | fission_yeast_phenotype | 2
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 602
Inferred from Mutant Phenotype | sequence | 7
Inferred from Physical Interaction | biological_process | 101
Inferred from Physical Interaction | cellular_component | 226
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2112
inferred from Reviewed Computational Analysis | cellular_component | 3
Inferred from Sequence Model | biological_process | 153
Inferred from Sequence Model | cellular_component | 66
Inferred from Sequence Model | molecular_function | 744
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | biological_process | 653
Inferred from Sequence or Structural Similarity | cellular_component | 675
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 531
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
Inferred from Sequence Orthology | biological_process | 2605
Inferred from Sequence Orthology | cellular_component | 2440
Inferred from Sequence Orthology | molecular_function | 1567
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
mass spectrometry evidence | PSI-MOD | 1173
Microscopy | fission_yeast_phenotype | 30869
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
Non-traceable Author Statement | biological_process | 343
Non-traceable Author Statement | cellular_component | 202
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 214
Northern assay evidence | fission_yeast_phenotype | 118
Northern assay evidence | gene_ex | 781
northern assay evidence used in manual assertion | gene_ex | 2
Other | fission_yeast_phenotype | 1344
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 15
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 387
quantitative PCR | gene_ex | 81
reporter gene assay evidence | fission_yeast_phenotype | 1776
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
RNA protection assay evidence | gene_ex | 25
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Substance quantification | fission_yeast_phenotype | 901
Traceable Author Statement | biological_process | 148
Traceable Author Statement | cellular_component | 87
Traceable Author Statement | molecular_function | 115
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | sequence | 2
transcript expression level evidence | fission_yeast_phenotype | 2614
transcript expression level evidence | gene_ex | 11
Western blot assay | fission_yeast_phenotype | 2777
Western blot evidence | fission_yeast_phenotype | 1
Western blot evidence | gene_ex | 407
western blot evidence used in manual assertion | gene_ex | 14
(109 rows)
total:
count
--------
272090
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
1181 | PSI-MOD
1854 | molecular_function
2304 | cellular_component
2869 | biological_process
19927 | PomBase annotation extension terms
27361 | fission_yeast_phenotype
(6 rows)
total
-------
55496
(1 row)