counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 21 | ex_tools 29 | cat_act 30 | pathway 90 | m_f_g 182 | subunit_composition 237 | genome_org 390 | misc 406 | complementation 835 | EC numbers 944 | name_description 954 | sequence 1084 | disease_associated 1728 | warning 1869 | PomBase family or domain 5138 | PomBase gene characterisation status 10841 | biological_process 11880 | molecular_function 15858 | cellular_component 24994 | species_dist 26153 | PSI-MOD 37066 | gene_ex 56083 | PomBase gene products 75268 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 1105 Inferred from Direct Assay | biological_process | 670 Inferred from Electronic Annotation | biological_process | 500 Inferred from Experiment | biological_process | 147 Inferred from Expression Pattern | biological_process | 29 Inferred from Genetic Interaction | biological_process | 650 Inferred from high throughput direct assay | biological_process | 17 Inferred from Mutant Phenotype | biological_process | 3915 Inferred from Physical Interaction | biological_process | 104 Inferred from Sequence Model | biological_process | 203 Inferred from Sequence or Structural Similarity | biological_process | 587 Inferred from Sequence Orthology | biological_process | 2347 Non-traceable Author Statement | biological_process | 408 Traceable Author Statement | biological_process | 159 Inferred by Curator | cellular_component | 465 Inferred from Direct Assay | cellular_component | 4698 Inferred from Electronic Annotation | cellular_component | 967 Inferred from Experiment | cellular_component | 119 Inferred from Genetic Interaction | cellular_component | 49 Inferred from high throughput direct assay | cellular_component | 6915 Inferred from Mutant Phenotype | cellular_component | 44 Inferred from Physical Interaction | cellular_component | 243 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence or Structural Similarity | cellular_component | 433 Inferred from Sequence Orthology | cellular_component | 1541 Non-traceable Author Statement | cellular_component | 185 Traceable Author Statement | cellular_component | 98 Non-traceable Author Statement | complementation | 1 cell growth assay evidence | fission_yeast_phenotype | 25295 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1027 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 629 competitive growth assay evidence | fission_yeast_phenotype | 713 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 109 Enzyme assay data | fission_yeast_phenotype | 1532 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 10 experimental phenotypic evidence | fission_yeast_phenotype | 493 Flow cytometry data | fission_yeast_phenotype | 954 gel electrophoresis evidence | fission_yeast_phenotype | 1910 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Immunolocalization experiment data | fission_yeast_phenotype | 10 Microscopy | fission_yeast_phenotype | 31374 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1362 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 15 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 401 reporter gene assay evidence | fission_yeast_phenotype | 1802 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Substance quantification evidence | fission_yeast_phenotype | 915 transcript expression level evidence | fission_yeast_phenotype | 2678 Western blot assay | fission_yeast_phenotype | 2764 western blot evidence used in manual assertion | fission_yeast_phenotype | 128 experimental evidence | gene_ex | 20340 expression microarray evidence | gene_ex | 1438 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 Northern assay evidence | gene_ex | 14 northern assay evidence used in manual assertion | gene_ex | 783 quantitative PCR | gene_ex | 83 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 11 Western blot evidence | gene_ex | 12 western blot evidence used in manual assertion | gene_ex | 423 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 100 Inferred from Direct Assay | molecular_function | 1702 Inferred from Electronic Annotation | molecular_function | 1857 Inferred from Experiment | molecular_function | 308 Inferred from Genetic Interaction | molecular_function | 131 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 608 Inferred from Physical Interaction | molecular_function | 2167 Inferred from Sequence Model | molecular_function | 1253 Inferred from Sequence or Structural Similarity | molecular_function | 472 Inferred from Sequence Orthology | molecular_function | 1425 Non-traceable Author Statement | molecular_function | 154 Traceable Author Statement | molecular_function | 150 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8476 Inferred from Direct Assay | PSI-MOD | 16335 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 mass spectrometry evidence | PSI-MOD | 1173 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (107 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | misc | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence or Structural Similarity | misc | 1 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Traceable Author Statement | sequence | 2 Inferred from Physical Interaction | misc | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 10 Immunolocalization experiment data | fission_yeast_phenotype | 10 transcript expression level evidence | gene_ex | 11 Western blot evidence | gene_ex | 12 Inferred from Sequence or Structural Similarity | genome_org | 13 Northern assay evidence | gene_ex | 14 in situ hybridization assay evidence | gene_ex | 14 Particle size and count assay | fission_yeast_phenotype | 15 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | molecular_function | 17 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 RNA protection assay evidence | gene_ex | 25 Inferred from Expression Pattern | biological_process | 29 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Mutant Phenotype | cellular_component | 44 Inferred from Genetic Interaction | cellular_component | 49 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 Chromatography evidence | fission_yeast_phenotype | 55 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | gene_ex | 83 Traceable Author Statement | cellular_component | 98 Inferred by Curator | molecular_function | 100 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Physical Interaction | biological_process | 104 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 109 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Experiment | cellular_component | 119 western blot evidence used in manual assertion | fission_yeast_phenotype | 128 Inferred from Genetic Interaction | molecular_function | 131 reporter gene assay evidence | gene_ex | 144 Inferred from Experiment | biological_process | 147 Traceable Author Statement | molecular_function | 150 Non-traceable Author Statement | molecular_function | 154 Traceable Author Statement | biological_process | 159 Non-traceable Author Statement | cellular_component | 185 Inferred from Sequence Model | biological_process | 203 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Physical Interaction | cellular_component | 243 Inferred from Experiment | molecular_function | 308 Inferred from Sequence or Structural Similarity | sequence | 355 quantitative PCR | fission_yeast_phenotype | 401 Non-traceable Author Statement | biological_process | 408 western blot evidence used in manual assertion | gene_ex | 423 Inferred from Sequence or Structural Similarity | cellular_component | 433 Inferred by Curator | cellular_component | 465 Inferred from Sequence or Structural Similarity | molecular_function | 472 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Electronic Annotation | biological_process | 500 Inferred from Sequence or Structural Similarity | biological_process | 587 Inferred from Mutant Phenotype | molecular_function | 608 Co-immunoprecipitation experiment | fission_yeast_phenotype | 629 Inferred from Genetic Interaction | biological_process | 650 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Inferred from Direct Assay | biological_process | 670 competitive growth assay evidence | fission_yeast_phenotype | 713 northern assay evidence used in manual assertion | gene_ex | 783 Substance quantification evidence | fission_yeast_phenotype | 915 Flow cytometry data | fission_yeast_phenotype | 954 Inferred from Electronic Annotation | cellular_component | 967 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1027 Inferred by Curator | biological_process | 1105 mass spectrometry evidence | PSI-MOD | 1173 Inferred from Sequence Model | molecular_function | 1253 Other | fission_yeast_phenotype | 1362 Inferred from Sequence Orthology | molecular_function | 1425 expression microarray evidence | gene_ex | 1438 Enzyme assay data | fission_yeast_phenotype | 1532 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Sequence Orthology | cellular_component | 1541 Inferred from Direct Assay | molecular_function | 1702 reporter gene assay evidence | fission_yeast_phenotype | 1802 Inferred from Electronic Annotation | molecular_function | 1857 gel electrophoresis evidence | fission_yeast_phenotype | 1910 Inferred from Physical Interaction | molecular_function | 2167 Inferred from Sequence Orthology | biological_process | 2347 transcript expression level evidence | fission_yeast_phenotype | 2678 Western blot assay | fission_yeast_phenotype | 2764 Inferred from Mutant Phenotype | biological_process | 3915 Inferred from Direct Assay | cellular_component | 4698 Inferred from high throughput direct assay | cellular_component | 6915 experimental evidence | PSI-MOD | 8476 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16335 experimental evidence | gene_ex | 20340 cell growth assay evidence | fission_yeast_phenotype | 25295 Microscopy | fission_yeast_phenotype | 31374 (107 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- cell growth assay evidence | fission_yeast_phenotype | 25295 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1027 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 629 competitive growth assay evidence | fission_yeast_phenotype | 713 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 109 Enzyme assay data | fission_yeast_phenotype | 1532 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 10 experimental evidence | gene_ex | 20340 experimental evidence | PSI-MOD | 8476 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 1438 Flow cytometry data | fission_yeast_phenotype | 954 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 1910 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 10 Inferred by Curator | biological_process | 1105 Inferred by Curator | cellular_component | 465 Inferred by Curator | molecular_function | 100 Inferred from Direct Assay | biological_process | 670 Inferred from Direct Assay | cellular_component | 4698 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1702 Inferred from Direct Assay | PSI-MOD | 16335 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | biological_process | 500 Inferred from Electronic Annotation | cellular_component | 967 Inferred from Electronic Annotation | molecular_function | 1857 Inferred from Experiment | biological_process | 147 Inferred from Experiment | cellular_component | 119 Inferred from Experiment | molecular_function | 308 Inferred from Expression Pattern | biological_process | 29 Inferred from Genetic Interaction | biological_process | 650 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Genetic Interaction | molecular_function | 131 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6915 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 3915 Inferred from Mutant Phenotype | cellular_component | 44 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 608 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 104 Inferred from Physical Interaction | cellular_component | 243 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2167 Inferred from Sequence Model | biological_process | 203 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence Model | molecular_function | 1253 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | biological_process | 587 Inferred from Sequence or Structural Similarity | cellular_component | 433 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 472 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence Orthology | biological_process | 2347 Inferred from Sequence Orthology | cellular_component | 1541 Inferred from Sequence Orthology | molecular_function | 1425 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 mass spectrometry evidence | PSI-MOD | 1173 Microscopy | fission_yeast_phenotype | 31374 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Non-traceable Author Statement | biological_process | 408 Non-traceable Author Statement | cellular_component | 185 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 154 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 14 northern assay evidence used in manual assertion | gene_ex | 783 Other | fission_yeast_phenotype | 1362 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 15 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 401 quantitative PCR | gene_ex | 83 reporter gene assay evidence | fission_yeast_phenotype | 1802 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification evidence | fission_yeast_phenotype | 915 Traceable Author Statement | biological_process | 159 Traceable Author Statement | cellular_component | 98 Traceable Author Statement | molecular_function | 150 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 transcript expression level evidence | fission_yeast_phenotype | 2678 transcript expression level evidence | gene_ex | 11 Western blot assay | fission_yeast_phenotype | 2764 Western blot evidence | gene_ex | 12 western blot evidence used in manual assertion | fission_yeast_phenotype | 128 western blot evidence used in manual assertion | gene_ex | 423 (107 rows) total: count -------- 272086 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1181 | PSI-MOD 1929 | molecular_function 2343 | cellular_component 2959 | biological_process 20897 | PomBase annotation extension terms 27914 | fission_yeast_phenotype (6 rows) total ------- 57223 (1 row)