counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 21 | ex_tools 29 | cat_act 30 | pathway 90 | m_f_g 182 | subunit_composition 237 | genome_org 391 | misc 411 | complementation 835 | EC numbers 944 | name_description 954 | sequence 1087 | disease_associated 1728 | warning 1869 | PomBase family or domain 5138 | PomBase gene characterisation status 10883 | biological_process 11944 | molecular_function 15874 | cellular_component 25037 | species_dist 26168 | PSI-MOD 37678 | gene_ex 56091 | PomBase gene products 76138 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 1133 Inferred from Direct Assay | biological_process | 665 Inferred from Electronic Annotation | biological_process | 497 Inferred from Experiment | biological_process | 154 Inferred from Expression Pattern | biological_process | 28 Inferred from Genetic Interaction | biological_process | 657 Inferred from high throughput direct assay | biological_process | 17 Inferred from Mutant Phenotype | biological_process | 3930 Inferred from Physical Interaction | biological_process | 103 Inferred from Sequence Model | biological_process | 204 Inferred from Sequence or Structural Similarity | biological_process | 592 Inferred from Sequence Orthology | biological_process | 2330 Non-traceable Author Statement | biological_process | 414 Traceable Author Statement | biological_process | 159 Inferred by Curator | cellular_component | 471 Inferred from Direct Assay | cellular_component | 4712 Inferred from Electronic Annotation | cellular_component | 966 Inferred from Experiment | cellular_component | 120 Inferred from Genetic Interaction | cellular_component | 49 Inferred from high throughput direct assay | cellular_component | 6912 Inferred from Mutant Phenotype | cellular_component | 44 Inferred from Physical Interaction | cellular_component | 241 Inferred from Sequence Model | cellular_component | 100 Inferred from Sequence or Structural Similarity | cellular_component | 432 Inferred from Sequence Orthology | cellular_component | 1537 Non-traceable Author Statement | cellular_component | 184 Traceable Author Statement | cellular_component | 106 Non-traceable Author Statement | complementation | 1 cell growth assay evidence | fission_yeast_phenotype | 25565 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1060 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 639 competitive growth assay evidence | fission_yeast_phenotype | 713 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 115 Enzyme assay data | fission_yeast_phenotype | 1552 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 10 experimental phenotypic evidence | fission_yeast_phenotype | 493 Flow cytometry data | fission_yeast_phenotype | 959 gel electrophoresis evidence | fission_yeast_phenotype | 1935 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Immunolocalization experiment data | fission_yeast_phenotype | 10 Microscopy | fission_yeast_phenotype | 31614 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1372 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 15 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 405 reporter gene assay evidence | fission_yeast_phenotype | 1812 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Substance quantification | fission_yeast_phenotype | 923 Substance quantification evidence | fission_yeast_phenotype | 1 transcript expression level evidence | fission_yeast_phenotype | 2820 Western blot assay | fission_yeast_phenotype | 2827 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 experimental evidence | gene_ex | 20340 expression microarray evidence | gene_ex | 2016 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 Northern assay evidence | gene_ex | 14 northern assay evidence used in manual assertion | gene_ex | 784 quantitative PCR | gene_ex | 83 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 11 Western blot evidence | gene_ex | 12 western blot evidence used in manual assertion | gene_ex | 424 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 100 Inferred from Direct Assay | molecular_function | 1707 Inferred from Electronic Annotation | molecular_function | 1852 Inferred from Experiment | molecular_function | 317 Inferred from Genetic Interaction | molecular_function | 131 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 608 Inferred from Physical Interaction | molecular_function | 2217 Inferred from Sequence Model | molecular_function | 1255 Inferred from Sequence or Structural Similarity | molecular_function | 471 Inferred from Sequence Orthology | molecular_function | 1429 Non-traceable Author Statement | molecular_function | 154 Traceable Author Statement | molecular_function | 150 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8476 Inferred from Direct Assay | PSI-MOD | 16351 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 mass spectrometry evidence | PSI-MOD | 1173 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (109 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Substance quantification evidence | fission_yeast_phenotype | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | sequence | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Physical Interaction | misc | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Other direct assay | fission_yeast_phenotype | 9 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 10 fusion protein localization evidence | gene_ex | 10 Immunolocalization experiment data | fission_yeast_phenotype | 10 transcript expression level evidence | gene_ex | 11 Western blot evidence | gene_ex | 12 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 Northern assay evidence | gene_ex | 14 Particle size and count assay | fission_yeast_phenotype | 15 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput direct assay | biological_process | 17 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 RNA protection assay evidence | gene_ex | 25 Inferred from Expression Pattern | biological_process | 28 ribosome profiling evidence | gene_ex | 32 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Mutant Phenotype | cellular_component | 44 Inferred from Genetic Interaction | cellular_component | 49 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 Chromatography evidence | fission_yeast_phenotype | 55 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | gene_ex | 83 Inferred by Curator | molecular_function | 100 Inferred from Sequence Model | cellular_component | 100 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Physical Interaction | biological_process | 103 Traceable Author Statement | cellular_component | 106 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 115 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Experiment | cellular_component | 120 Inferred from Genetic Interaction | molecular_function | 131 reporter gene assay evidence | gene_ex | 144 Traceable Author Statement | molecular_function | 150 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Non-traceable Author Statement | molecular_function | 154 Inferred from Experiment | biological_process | 154 Traceable Author Statement | biological_process | 159 Non-traceable Author Statement | cellular_component | 184 Inferred from Sequence Model | biological_process | 204 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Physical Interaction | cellular_component | 241 Inferred from Experiment | molecular_function | 317 Inferred from Sequence or Structural Similarity | sequence | 355 quantitative PCR | fission_yeast_phenotype | 405 Non-traceable Author Statement | biological_process | 414 western blot evidence used in manual assertion | gene_ex | 424 Inferred from Sequence or Structural Similarity | cellular_component | 432 Inferred by Curator | cellular_component | 471 Inferred from Sequence or Structural Similarity | molecular_function | 471 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Electronic Annotation | biological_process | 497 Inferred from Sequence or Structural Similarity | biological_process | 592 Inferred from Mutant Phenotype | molecular_function | 608 Co-immunoprecipitation experiment | fission_yeast_phenotype | 639 Inferred from Genetic Interaction | biological_process | 657 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Inferred from Direct Assay | biological_process | 665 competitive growth assay evidence | fission_yeast_phenotype | 713 northern assay evidence used in manual assertion | gene_ex | 784 Substance quantification | fission_yeast_phenotype | 923 Flow cytometry data | fission_yeast_phenotype | 959 Inferred from Electronic Annotation | cellular_component | 966 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1060 Inferred by Curator | biological_process | 1133 mass spectrometry evidence | PSI-MOD | 1173 Inferred from Sequence Model | molecular_function | 1255 Other | fission_yeast_phenotype | 1372 Inferred from Sequence Orthology | molecular_function | 1429 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Sequence Orthology | cellular_component | 1537 Enzyme assay data | fission_yeast_phenotype | 1552 Inferred from Direct Assay | molecular_function | 1707 reporter gene assay evidence | fission_yeast_phenotype | 1812 Inferred from Electronic Annotation | molecular_function | 1852 gel electrophoresis evidence | fission_yeast_phenotype | 1935 expression microarray evidence | gene_ex | 2016 Inferred from Physical Interaction | molecular_function | 2217 Inferred from Sequence Orthology | biological_process | 2330 transcript expression level evidence | fission_yeast_phenotype | 2820 Western blot assay | fission_yeast_phenotype | 2827 Inferred from Mutant Phenotype | biological_process | 3930 Inferred from Direct Assay | cellular_component | 4712 Inferred from high throughput direct assay | cellular_component | 6912 experimental evidence | PSI-MOD | 8476 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16351 experimental evidence | gene_ex | 20340 cell growth assay evidence | fission_yeast_phenotype | 25565 Microscopy | fission_yeast_phenotype | 31614 (109 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- cell growth assay evidence | fission_yeast_phenotype | 25565 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1060 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 639 competitive growth assay evidence | fission_yeast_phenotype | 713 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 115 Enzyme assay data | fission_yeast_phenotype | 1552 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 10 experimental evidence | gene_ex | 20340 experimental evidence | PSI-MOD | 8476 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2016 Flow cytometry data | fission_yeast_phenotype | 959 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 1935 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 10 Inferred by Curator | biological_process | 1133 Inferred by Curator | cellular_component | 471 Inferred by Curator | molecular_function | 100 Inferred from Direct Assay | biological_process | 665 Inferred from Direct Assay | cellular_component | 4712 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1707 Inferred from Direct Assay | PSI-MOD | 16351 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | biological_process | 497 Inferred from Electronic Annotation | cellular_component | 966 Inferred from Electronic Annotation | molecular_function | 1852 Inferred from Experiment | biological_process | 154 Inferred from Experiment | cellular_component | 120 Inferred from Experiment | molecular_function | 317 Inferred from Expression Pattern | biological_process | 28 Inferred from Genetic Interaction | biological_process | 657 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Genetic Interaction | molecular_function | 131 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6912 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 3930 Inferred from Mutant Phenotype | cellular_component | 44 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 608 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 103 Inferred from Physical Interaction | cellular_component | 241 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2217 Inferred from Sequence Model | biological_process | 204 Inferred from Sequence Model | cellular_component | 100 Inferred from Sequence Model | molecular_function | 1255 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | biological_process | 592 Inferred from Sequence or Structural Similarity | cellular_component | 432 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 471 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence Orthology | biological_process | 2330 Inferred from Sequence Orthology | cellular_component | 1537 Inferred from Sequence Orthology | molecular_function | 1429 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 mass spectrometry evidence | PSI-MOD | 1173 Microscopy | fission_yeast_phenotype | 31614 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Non-traceable Author Statement | biological_process | 414 Non-traceable Author Statement | cellular_component | 184 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 154 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 14 northern assay evidence used in manual assertion | gene_ex | 784 Other | fission_yeast_phenotype | 1372 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 15 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 405 quantitative PCR | gene_ex | 83 reporter gene assay evidence | fission_yeast_phenotype | 1812 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 923 Substance quantification evidence | fission_yeast_phenotype | 1 Traceable Author Statement | biological_process | 159 Traceable Author Statement | cellular_component | 106 Traceable Author Statement | molecular_function | 150 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 transcript expression level evidence | fission_yeast_phenotype | 2820 transcript expression level evidence | gene_ex | 11 Western blot assay | fission_yeast_phenotype | 2827 Western blot evidence | gene_ex | 12 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 424 (109 rows) total: count -------- 273765 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1181 | PSI-MOD 1951 | molecular_function 2360 | cellular_component 3007 | biological_process 21547 | PomBase annotation extension terms 28250 | fission_yeast_phenotype (6 rows) total ------- 58296 (1 row)