counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 21 | ex_tools 29 | cat_act 30 | pathway 90 | m_f_g 182 | subunit_composition 237 | genome_org 392 | misc 419 | complementation 835 | EC numbers 947 | name_description 954 | sequence 1125 | disease_associated 1728 | warning 1864 | PomBase family or domain 5138 | PomBase gene characterisation status 10990 | biological_process 12057 | molecular_function 15961 | cellular_component 25044 | species_dist 26185 | PSI-MOD 37714 | gene_ex 56196 | PomBase gene products 78554 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 1119 Inferred from Biological aspect of Ancestor | biological_process | 81 Inferred from Direct Assay | biological_process | 668 Inferred from Electronic Annotation | biological_process | 489 Inferred from Experiment | biological_process | 178 Inferred from Expression Pattern | biological_process | 28 Inferred from Genetic Interaction | biological_process | 657 Inferred from high throughput direct assay | biological_process | 17 Inferred from Mutant Phenotype | biological_process | 3974 Inferred from Physical Interaction | biological_process | 106 Inferred from Sequence Model | biological_process | 196 Inferred from Sequence or Structural Similarity | biological_process | 589 Inferred from Sequence Orthology | biological_process | 2314 Non-traceable Author Statement | biological_process | 408 Traceable Author Statement | biological_process | 166 Inferred by Curator | cellular_component | 469 Inferred from Direct Assay | cellular_component | 4789 Inferred from Electronic Annotation | cellular_component | 970 Inferred from Experiment | cellular_component | 132 Inferred from Genetic Interaction | cellular_component | 49 Inferred from high throughput direct assay | cellular_component | 6910 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Physical Interaction | cellular_component | 241 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence or Structural Similarity | cellular_component | 432 Inferred from Sequence Orthology | cellular_component | 1529 Non-traceable Author Statement | cellular_component | 185 Traceable Author Statement | cellular_component | 109 Non-traceable Author Statement | complementation | 1 cell growth assay evidence | fission_yeast_phenotype | 26570 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1084 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 674 competitive growth assay evidence | fission_yeast_phenotype | 713 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 122 Enzyme assay data | fission_yeast_phenotype | 1595 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 14 experimental phenotypic evidence | fission_yeast_phenotype | 493 Flow cytometry data | fission_yeast_phenotype | 1005 gel electrophoresis evidence | fission_yeast_phenotype | 2002 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Immunolocalization experiment data | fission_yeast_phenotype | 15 Microscopy | fission_yeast_phenotype | 32377 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1426 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 19 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 437 reporter gene assay evidence | fission_yeast_phenotype | 1860 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Substance quantification | fission_yeast_phenotype | 929 transcript expression level evidence | fission_yeast_phenotype | 2913 Western blot assay | fission_yeast_phenotype | 3008 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 experimental evidence | gene_ex | 20340 expression microarray evidence | gene_ex | 2016 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 Northern assay evidence | gene_ex | 31 northern assay evidence used in manual assertion | gene_ex | 789 quantitative PCR | gene_ex | 83 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 13 Western blot evidence | gene_ex | 18 western blot evidence used in manual assertion | gene_ex | 430 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 106 Inferred from Direct Assay | molecular_function | 1734 Inferred from Electronic Annotation | molecular_function | 1805 Inferred from Experiment | molecular_function | 347 Inferred from Genetic Interaction | molecular_function | 132 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 623 Inferred from Physical Interaction | molecular_function | 2310 Inferred from Sequence Model | molecular_function | 1264 Inferred from Sequence or Structural Similarity | molecular_function | 475 Inferred from Sequence Orthology | molecular_function | 1411 Non-traceable Author Statement | molecular_function | 152 Traceable Author Statement | molecular_function | 145 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8476 Inferred from Direct Assay | PSI-MOD | 16368 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 mass spectrometry evidence | PSI-MOD | 1173 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (109 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 Inferred from Sequence Model | PSI-MOD | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 transcript expression level evidence | gene_ex | 13 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 14 Immunolocalization experiment data | fission_yeast_phenotype | 15 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput direct assay | biological_process | 17 Western blot evidence | gene_ex | 18 Particle size and count assay | fission_yeast_phenotype | 19 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 RNA protection assay evidence | gene_ex | 25 Inferred from Expression Pattern | biological_process | 28 Northern assay evidence | gene_ex | 31 ribosome profiling evidence | gene_ex | 32 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Genetic Interaction | cellular_component | 49 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 Chromatography evidence | fission_yeast_phenotype | 55 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Inferred from Biological aspect of Ancestor | biological_process | 81 quantitative PCR | gene_ex | 83 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 102 Inferred by Curator | molecular_function | 106 Inferred from Physical Interaction | biological_process | 106 Traceable Author Statement | cellular_component | 109 Northern assay evidence | fission_yeast_phenotype | 118 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 122 Inferred from Genetic Interaction | molecular_function | 132 Inferred from Experiment | cellular_component | 132 reporter gene assay evidence | gene_ex | 144 Traceable Author Statement | molecular_function | 145 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Non-traceable Author Statement | molecular_function | 152 Traceable Author Statement | biological_process | 166 Inferred from Experiment | biological_process | 178 Non-traceable Author Statement | cellular_component | 185 Inferred from Sequence Model | biological_process | 196 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Physical Interaction | cellular_component | 241 Inferred from Experiment | molecular_function | 347 Inferred from Sequence or Structural Similarity | sequence | 355 Non-traceable Author Statement | biological_process | 408 western blot evidence used in manual assertion | gene_ex | 430 Inferred from Sequence or Structural Similarity | cellular_component | 432 quantitative PCR | fission_yeast_phenotype | 437 Inferred by Curator | cellular_component | 469 Inferred from Sequence or Structural Similarity | molecular_function | 475 Inferred from Electronic Annotation | biological_process | 489 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Sequence or Structural Similarity | biological_process | 589 Inferred from Mutant Phenotype | molecular_function | 623 Inferred from Genetic Interaction | biological_process | 657 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Inferred from Direct Assay | biological_process | 668 Co-immunoprecipitation experiment | fission_yeast_phenotype | 674 competitive growth assay evidence | fission_yeast_phenotype | 713 northern assay evidence used in manual assertion | gene_ex | 789 Substance quantification | fission_yeast_phenotype | 929 Inferred from Electronic Annotation | cellular_component | 970 Flow cytometry data | fission_yeast_phenotype | 1005 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1084 Inferred by Curator | biological_process | 1119 mass spectrometry evidence | PSI-MOD | 1173 Inferred from Sequence Model | molecular_function | 1264 Inferred from Sequence Orthology | molecular_function | 1411 Other | fission_yeast_phenotype | 1426 Inferred from Sequence Orthology | cellular_component | 1529 Inferred from high throughput mutant phenotype | molecular_function | 1535 Enzyme assay data | fission_yeast_phenotype | 1595 Inferred from Direct Assay | molecular_function | 1734 Inferred from Electronic Annotation | molecular_function | 1805 reporter gene assay evidence | fission_yeast_phenotype | 1860 gel electrophoresis evidence | fission_yeast_phenotype | 2002 expression microarray evidence | gene_ex | 2016 Inferred from Physical Interaction | molecular_function | 2310 Inferred from Sequence Orthology | biological_process | 2314 transcript expression level evidence | fission_yeast_phenotype | 2913 Western blot assay | fission_yeast_phenotype | 3008 Inferred from Mutant Phenotype | biological_process | 3974 Inferred from Direct Assay | cellular_component | 4789 Inferred from high throughput direct assay | cellular_component | 6910 experimental evidence | PSI-MOD | 8476 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16368 experimental evidence | gene_ex | 20340 cell growth assay evidence | fission_yeast_phenotype | 26570 Microscopy | fission_yeast_phenotype | 32377 (109 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ------------------------------------------------------------------------+--------------------------+------- cell growth assay evidence | fission_yeast_phenotype | 26570 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1084 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 674 competitive growth assay evidence | fission_yeast_phenotype | 713 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 122 Enzyme assay data | fission_yeast_phenotype | 1595 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 14 experimental evidence | gene_ex | 20340 experimental evidence | PSI-MOD | 8476 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2016 Flow cytometry data | fission_yeast_phenotype | 1005 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 2002 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 15 Inferred by Curator | biological_process | 1119 Inferred by Curator | cellular_component | 469 Inferred by Curator | molecular_function | 106 Inferred from Biological aspect of Ancestor | biological_process | 81 Inferred from Direct Assay | biological_process | 668 Inferred from Direct Assay | cellular_component | 4789 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1734 Inferred from Direct Assay | PSI-MOD | 16368 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | biological_process | 489 Inferred from Electronic Annotation | cellular_component | 970 Inferred from Electronic Annotation | molecular_function | 1805 Inferred from Experiment | biological_process | 178 Inferred from Experiment | cellular_component | 132 Inferred from Experiment | molecular_function | 347 Inferred from Expression Pattern | biological_process | 28 Inferred from Genetic Interaction | biological_process | 657 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Genetic Interaction | molecular_function | 132 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6910 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 3974 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 623 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 106 Inferred from Physical Interaction | cellular_component | 241 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2310 Inferred from Sequence Model | biological_process | 196 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence Model | molecular_function | 1264 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | biological_process | 589 Inferred from Sequence or Structural Similarity | cellular_component | 432 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 475 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence Orthology | biological_process | 2314 Inferred from Sequence Orthology | cellular_component | 1529 Inferred from Sequence Orthology | molecular_function | 1411 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 mass spectrometry evidence | PSI-MOD | 1173 Microscopy | fission_yeast_phenotype | 32377 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Non-traceable Author Statement | biological_process | 408 Non-traceable Author Statement | cellular_component | 185 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 152 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 31 northern assay evidence used in manual assertion | gene_ex | 789 Other | fission_yeast_phenotype | 1426 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 19 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 437 quantitative PCR | gene_ex | 83 reporter gene assay evidence | fission_yeast_phenotype | 1860 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 929 Traceable Author Statement | biological_process | 166 Traceable Author Statement | cellular_component | 109 Traceable Author Statement | molecular_function | 145 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 transcript expression level evidence | fission_yeast_phenotype | 2913 transcript expression level evidence | gene_ex | 13 Western blot assay | fission_yeast_phenotype | 3008 Western blot evidence | gene_ex | 18 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 430 (109 rows) total: count -------- 276698 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1187 | PSI-MOD 2081 | molecular_function 2417 | cellular_component 3112 | biological_process 23035 | PomBase annotation extension terms 29116 | fission_yeast_phenotype (6 rows) total ------- 60948 (1 row)