counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
21 | ex_tools
29 | cat_act
30 | pathway
90 | m_f_g
182 | subunit_composition
237 | genome_org
393 | misc
419 | complementation
835 | EC numbers
948 | name_description
954 | sequence
1131 | disease_associated
1730 | warning
1864 | PomBase family or domain
5137 | PomBase gene characterisation status
11051 | biological_process
12089 | molecular_function
16021 | cellular_component
25046 | species_dist
35287 | PSI-MOD
37720 | gene_ex
56228 | PomBase gene products
79176 | fission_yeast_phenotype
(24 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred by Curator | biological_process | 1126
Inferred from Biological aspect of Ancestor | biological_process | 91
Inferred from Direct Assay | biological_process | 664
Inferred from Electronic Annotation | biological_process | 524
Inferred from Experiment | biological_process | 186
Inferred from Expression Pattern | biological_process | 28
Inferred from Genetic Interaction | biological_process | 666
Inferred from high throughput direct assay | biological_process | 17
Inferred from Mutant Phenotype | biological_process | 3977
Inferred from Physical Interaction | biological_process | 107
Inferred from Sequence Model | biological_process | 198
Inferred from Sequence or Structural Similarity | biological_process | 587
Inferred from Sequence Orthology | biological_process | 2304
Non-traceable Author Statement | biological_process | 408
Traceable Author Statement | biological_process | 168
Inferred by Curator | cellular_component | 489
Inferred from Direct Assay | cellular_component | 4810
Inferred from Electronic Annotation | cellular_component | 1003
Inferred from Experiment | cellular_component | 143
Inferred from Genetic Interaction | cellular_component | 49
Inferred from high throughput direct assay | cellular_component | 6900
Inferred from Mutant Phenotype | cellular_component | 45
Inferred from Physical Interaction | cellular_component | 241
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence or Structural Similarity | cellular_component | 421
Inferred from Sequence Orthology | cellular_component | 1529
Non-traceable Author Statement | cellular_component | 183
Traceable Author Statement | cellular_component | 107
Non-traceable Author Statement | complementation | 1
cell growth assay evidence | fission_yeast_phenotype | 26723
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1094
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 701
competitive growth assay evidence | fission_yeast_phenotype | 712
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 121
Enzyme assay data | fission_yeast_phenotype | 1609
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 14
experimental phenotypic evidence | fission_yeast_phenotype | 493
Flow cytometry data | fission_yeast_phenotype | 1008
gel electrophoresis evidence | fission_yeast_phenotype | 2052
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Immunolocalization experiment data | fission_yeast_phenotype | 18
Microscopy | fission_yeast_phenotype | 32649
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1448
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 19
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 437
reporter gene assay evidence | fission_yeast_phenotype | 1875
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Substance quantification | fission_yeast_phenotype | 1
Substance quantification evidence | fission_yeast_phenotype | 928
transcript expression level evidence | fission_yeast_phenotype | 2918
Western blot assay | fission_yeast_phenotype | 3058
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
experimental evidence | gene_ex | 20340
expression microarray evidence | gene_ex | 2016
fusion protein localization evidence | gene_ex | 10
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
Northern assay evidence | gene_ex | 37
northern assay evidence used in manual assertion | gene_ex | 789
quantitative PCR | gene_ex | 83
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 25
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | gene_ex | 13
Western blot evidence | gene_ex | 18
western blot evidence used in manual assertion | gene_ex | 430
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 112
Inferred from Direct Assay | molecular_function | 1740
Inferred from Electronic Annotation | molecular_function | 1817
Inferred from Experiment | molecular_function | 351
Inferred from Genetic Interaction | molecular_function | 133
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 627
Inferred from Physical Interaction | molecular_function | 2317
Inferred from Sequence Model | molecular_function | 1263
Inferred from Sequence or Structural Similarity | molecular_function | 468
Inferred from Sequence Orthology | molecular_function | 1411
Non-traceable Author Statement | molecular_function | 152
Traceable Author Statement | molecular_function | 145
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
experimental evidence | PSI-MOD | 8141
Inferred from Direct Assay | PSI-MOD | 16381
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
mass spectrometry evidence | PSI-MOD | 1173
Traceable Author Statement | PSI-MOD | 1
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Inferred from Direct Assay | sequence | 3
Inferred from Mutant Phenotype | sequence | 7
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 3
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
(111 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Substance quantification | fission_yeast_phenotype | 1
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Key Residues | molecular_function | 1
Non-traceable Author Statement | complementation | 1
Traceable Author Statement | sequence | 2
Inferred from Sequence Model | PSI-MOD | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Inferred from Physical Interaction | misc | 2
Inferred from Direct Assay | subunit_composition | 3
Inferred from Direct Assay | sequence | 3
Inferred from Mutant Phenotype | misc | 4
Traceable Author Statement | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
Inferred from Mutant Phenotype | sequence | 7
Other direct assay | fission_yeast_phenotype | 9
fusion protein localization evidence | gene_ex | 10
transcript expression level evidence | gene_ex | 13
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 14
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput direct assay | biological_process | 17
Immunolocalization experiment data | fission_yeast_phenotype | 18
Western blot evidence | gene_ex | 18
Particle size and count assay | fission_yeast_phenotype | 19
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
RNA protection assay evidence | gene_ex | 25
Inferred from Expression Pattern | biological_process | 28
ribosome profiling evidence | gene_ex | 32
Northern assay evidence | gene_ex | 37
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Mutant Phenotype | cellular_component | 45
Inferred from Genetic Interaction | cellular_component | 49
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
Chromatography evidence | fission_yeast_phenotype | 55
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | gene_ex | 83
Inferred from Biological aspect of Ancestor | biological_process | 91
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence or Structural Similarity | warning | 102
Inferred from Physical Interaction | biological_process | 107
Traceable Author Statement | cellular_component | 107
Inferred by Curator | molecular_function | 112
Northern assay evidence | fission_yeast_phenotype | 118
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 121
Inferred from Genetic Interaction | molecular_function | 133
Inferred from Experiment | cellular_component | 143
reporter gene assay evidence | gene_ex | 144
Traceable Author Statement | molecular_function | 145
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
Non-traceable Author Statement | molecular_function | 152
Traceable Author Statement | biological_process | 168
Non-traceable Author Statement | cellular_component | 183
Inferred from Experiment | biological_process | 186
Inferred from Sequence Model | biological_process | 198
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Physical Interaction | cellular_component | 241
Inferred from Experiment | molecular_function | 351
Inferred from Sequence or Structural Similarity | sequence | 355
Non-traceable Author Statement | biological_process | 408
Inferred from Sequence or Structural Similarity | cellular_component | 421
western blot evidence used in manual assertion | gene_ex | 430
quantitative PCR | fission_yeast_phenotype | 437
Inferred from Sequence or Structural Similarity | molecular_function | 468
Inferred by Curator | cellular_component | 489
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Electronic Annotation | biological_process | 524
Inferred from Sequence or Structural Similarity | biological_process | 587
Inferred from Mutant Phenotype | molecular_function | 627
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Inferred from Direct Assay | biological_process | 664
Inferred from Genetic Interaction | biological_process | 666
Co-immunoprecipitation experiment | fission_yeast_phenotype | 701
competitive growth assay evidence | fission_yeast_phenotype | 712
northern assay evidence used in manual assertion | gene_ex | 789
Substance quantification evidence | fission_yeast_phenotype | 928
Inferred from Electronic Annotation | cellular_component | 1003
Flow cytometry data | fission_yeast_phenotype | 1008
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1094
Inferred by Curator | biological_process | 1126
mass spectrometry evidence | PSI-MOD | 1173
Inferred from Sequence Model | molecular_function | 1263
Inferred from Sequence Orthology | molecular_function | 1411
Other | fission_yeast_phenotype | 1448
Inferred from Sequence Orthology | cellular_component | 1529
Inferred from high throughput mutant phenotype | molecular_function | 1535
Enzyme assay data | fission_yeast_phenotype | 1609
Inferred from Direct Assay | molecular_function | 1740
Inferred from Electronic Annotation | molecular_function | 1817
reporter gene assay evidence | fission_yeast_phenotype | 1875
expression microarray evidence | gene_ex | 2016
gel electrophoresis evidence | fission_yeast_phenotype | 2052
Inferred from Sequence Orthology | biological_process | 2304
Inferred from Physical Interaction | molecular_function | 2317
transcript expression level evidence | fission_yeast_phenotype | 2918
Western blot assay | fission_yeast_phenotype | 3058
Inferred from Mutant Phenotype | biological_process | 3977
Inferred from Direct Assay | cellular_component | 4810
Inferred from high throughput direct assay | cellular_component | 6900
experimental evidence | PSI-MOD | 8141
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
mass spectrometry evidence | gene_ex | 13688
Inferred from Direct Assay | PSI-MOD | 16381
experimental evidence | gene_ex | 20340
cell growth assay evidence | fission_yeast_phenotype | 26723
Microscopy | fission_yeast_phenotype | 32649
(111 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
cell growth assay evidence | fission_yeast_phenotype | 26723
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1094
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 701
competitive growth assay evidence | fission_yeast_phenotype | 712
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 121
Enzyme assay data | fission_yeast_phenotype | 1609
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 14
experimental evidence | gene_ex | 20340
experimental evidence | PSI-MOD | 8141
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 2016
Flow cytometry data | fission_yeast_phenotype | 1008
fusion protein localization evidence | gene_ex | 10
gel electrophoresis evidence | fission_yeast_phenotype | 2052
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred by Curator | biological_process | 1126
Inferred by Curator | cellular_component | 489
Inferred by Curator | molecular_function | 112
Inferred from Biological aspect of Ancestor | biological_process | 91
Inferred from Direct Assay | biological_process | 664
Inferred from Direct Assay | cellular_component | 4810
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1740
Inferred from Direct Assay | PSI-MOD | 16381
Inferred from Direct Assay | sequence | 3
Inferred from Direct Assay | subunit_composition | 3
Inferred from Electronic Annotation | biological_process | 524
Inferred from Electronic Annotation | cellular_component | 1003
Inferred from Electronic Annotation | molecular_function | 1817
Inferred from Experiment | biological_process | 186
Inferred from Experiment | cellular_component | 143
Inferred from Experiment | molecular_function | 351
Inferred from Expression Pattern | biological_process | 28
Inferred from Genetic Interaction | biological_process | 666
Inferred from Genetic Interaction | cellular_component | 49
Inferred from Genetic Interaction | molecular_function | 133
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6900
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | biological_process | 3977
Inferred from Mutant Phenotype | cellular_component | 45
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 627
Inferred from Mutant Phenotype | sequence | 7
Inferred from Physical Interaction | biological_process | 107
Inferred from Physical Interaction | cellular_component | 241
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2317
Inferred from Sequence Model | biological_process | 198
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence Model | molecular_function | 1263
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | biological_process | 587
Inferred from Sequence or Structural Similarity | cellular_component | 421
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 468
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
Inferred from Sequence Orthology | biological_process | 2304
Inferred from Sequence Orthology | cellular_component | 1529
Inferred from Sequence Orthology | molecular_function | 1411
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
mass spectrometry evidence | PSI-MOD | 1173
Microscopy | fission_yeast_phenotype | 32649
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Non-traceable Author Statement | biological_process | 408
Non-traceable Author Statement | cellular_component | 183
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 152
Northern assay evidence | fission_yeast_phenotype | 118
Northern assay evidence | gene_ex | 37
northern assay evidence used in manual assertion | gene_ex | 789
Other | fission_yeast_phenotype | 1448
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 19
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 437
quantitative PCR | gene_ex | 83
reporter gene assay evidence | fission_yeast_phenotype | 1875
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 25
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Substance quantification | fission_yeast_phenotype | 1
Substance quantification evidence | fission_yeast_phenotype | 928
Traceable Author Statement | biological_process | 168
Traceable Author Statement | cellular_component | 107
Traceable Author Statement | molecular_function | 145
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | sequence | 2
transcript expression level evidence | fission_yeast_phenotype | 2918
transcript expression level evidence | gene_ex | 13
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Western blot assay | fission_yeast_phenotype | 3058
Western blot evidence | gene_ex | 18
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
western blot evidence used in manual assertion | gene_ex | 430
(111 rows)
total:
count
--------
286624
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
1188 | PSI-MOD
2087 | molecular_function
2434 | cellular_component
3131 | biological_process
23358 | PomBase annotation extension terms
29389 | fission_yeast_phenotype
(6 rows)
total
-------
61587
(1 row)