counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 21 | ex_tools 29 | cat_act 30 | pathway 90 | m_f_g 182 | subunit_composition 237 | genome_org 393 | misc 419 | complementation 835 | EC numbers 948 | name_description 954 | sequence 1132 | disease_associated 1730 | warning 1864 | PomBase family or domain 5137 | PomBase gene characterisation status 11093 | biological_process 12118 | molecular_function 16035 | cellular_component 25046 | species_dist 35288 | PSI-MOD 37721 | gene_ex 56337 | PomBase gene products 79934 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 1128 Inferred from Biological aspect of Ancestor | biological_process | 87 Inferred from Direct Assay | biological_process | 670 Inferred from Electronic Annotation | biological_process | 534 Inferred from Experiment | biological_process | 188 Inferred from Expression Pattern | biological_process | 28 Inferred from Genetic Interaction | biological_process | 666 Inferred from high throughput direct assay | biological_process | 17 Inferred from Mutant Phenotype | biological_process | 4020 Inferred from Physical Interaction | biological_process | 107 Inferred from Sequence Model | biological_process | 198 Inferred from Sequence or Structural Similarity | biological_process | 588 Inferred from Sequence Orthology | biological_process | 2298 Non-traceable Author Statement | biological_process | 400 Traceable Author Statement | biological_process | 164 Inferred by Curator | cellular_component | 488 Inferred from Direct Assay | cellular_component | 4821 Inferred from Electronic Annotation | cellular_component | 1003 Inferred from Experiment | cellular_component | 149 Inferred from Genetic Interaction | cellular_component | 49 Inferred from high throughput direct assay | cellular_component | 6900 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Physical Interaction | cellular_component | 242 Inferred from Sequence Model | cellular_component | 99 Inferred from Sequence or Structural Similarity | cellular_component | 421 Inferred from Sequence Orthology | cellular_component | 1528 Non-traceable Author Statement | cellular_component | 183 Traceable Author Statement | cellular_component | 107 Non-traceable Author Statement | complementation | 1 cell growth assay evidence | fission_yeast_phenotype | 27009 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1130 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 707 competitive growth assay evidence | fission_yeast_phenotype | 880 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 133 Enzyme assay data | fission_yeast_phenotype | 1629 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 29 experimental phenotypic evidence | fission_yeast_phenotype | 493 Flow cytometry data | fission_yeast_phenotype | 1013 gel electrophoresis evidence | fission_yeast_phenotype | 2057 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 32693 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1448 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 19 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 437 reporter gene assay evidence | fission_yeast_phenotype | 1881 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Substance quantification | fission_yeast_phenotype | 928 Substance quantification evidence | fission_yeast_phenotype | 1 transcript expression level evidence | fission_yeast_phenotype | 3010 Western blot assay | fission_yeast_phenotype | 3121 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 experimental evidence | gene_ex | 20340 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 Northern assay evidence | gene_ex | 37 northern assay evidence used in manual assertion | gene_ex | 789 quantitative PCR | gene_ex | 83 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 13 Western blot evidence | gene_ex | 18 western blot evidence used in manual assertion | gene_ex | 430 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 112 Inferred from Direct Assay | molecular_function | 1743 Inferred from Electronic Annotation | molecular_function | 1828 Inferred from Experiment | molecular_function | 357 Inferred from Genetic Interaction | molecular_function | 134 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 632 Inferred from Physical Interaction | molecular_function | 2326 Inferred from Sequence Model | molecular_function | 1262 Inferred from Sequence or Structural Similarity | molecular_function | 467 Inferred from Sequence Orthology | molecular_function | 1411 Non-traceable Author Statement | molecular_function | 151 Traceable Author Statement | molecular_function | 142 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | PSI-MOD | 16383 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 mass spectrometry evidence | PSI-MOD | 1173 Traceable Author Statement | PSI-MOD | 1 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (111 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Substance quantification evidence | fission_yeast_phenotype | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | sequence | 2 Inferred from Sequence Model | PSI-MOD | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 transcript expression level evidence | gene_ex | 13 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput direct assay | biological_process | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 Western blot evidence | gene_ex | 18 Particle size and count assay | fission_yeast_phenotype | 19 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 RNA protection assay evidence | gene_ex | 25 Inferred from Expression Pattern | biological_process | 28 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 29 ribosome profiling evidence | gene_ex | 32 Northern assay evidence | gene_ex | 37 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Genetic Interaction | cellular_component | 49 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 Chromatography evidence | fission_yeast_phenotype | 55 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | gene_ex | 83 Inferred from Biological aspect of Ancestor | biological_process | 87 Inferred from Sequence Model | cellular_component | 99 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Physical Interaction | biological_process | 107 Traceable Author Statement | cellular_component | 107 Inferred by Curator | molecular_function | 112 Northern assay evidence | fission_yeast_phenotype | 118 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 133 Inferred from Genetic Interaction | molecular_function | 134 Traceable Author Statement | molecular_function | 142 reporter gene assay evidence | gene_ex | 144 Inferred from Experiment | cellular_component | 149 Non-traceable Author Statement | molecular_function | 151 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Traceable Author Statement | biological_process | 164 Non-traceable Author Statement | cellular_component | 183 Inferred from Experiment | biological_process | 188 Inferred from Sequence Model | biological_process | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Physical Interaction | cellular_component | 242 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Experiment | molecular_function | 357 Non-traceable Author Statement | biological_process | 400 Inferred from Sequence or Structural Similarity | cellular_component | 421 western blot evidence used in manual assertion | gene_ex | 430 quantitative PCR | fission_yeast_phenotype | 437 Inferred from Sequence or Structural Similarity | molecular_function | 467 Inferred by Curator | cellular_component | 488 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Electronic Annotation | biological_process | 534 Inferred from Sequence or Structural Similarity | biological_process | 588 Inferred from Mutant Phenotype | molecular_function | 632 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Inferred from Genetic Interaction | biological_process | 666 Inferred from Direct Assay | biological_process | 670 Co-immunoprecipitation experiment | fission_yeast_phenotype | 707 northern assay evidence used in manual assertion | gene_ex | 789 competitive growth assay evidence | fission_yeast_phenotype | 880 Substance quantification | fission_yeast_phenotype | 928 Inferred from Electronic Annotation | cellular_component | 1003 Flow cytometry data | fission_yeast_phenotype | 1013 Inferred by Curator | biological_process | 1128 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1130 mass spectrometry evidence | PSI-MOD | 1173 Inferred from Sequence Model | molecular_function | 1262 Inferred from Sequence Orthology | molecular_function | 1411 Other | fission_yeast_phenotype | 1448 Inferred from Sequence Orthology | cellular_component | 1528 Inferred from high throughput mutant phenotype | molecular_function | 1535 Enzyme assay data | fission_yeast_phenotype | 1629 Inferred from Direct Assay | molecular_function | 1743 Inferred from Electronic Annotation | molecular_function | 1828 reporter gene assay evidence | fission_yeast_phenotype | 1881 expression microarray evidence | gene_ex | 2017 gel electrophoresis evidence | fission_yeast_phenotype | 2057 Inferred from Sequence Orthology | biological_process | 2298 Inferred from Physical Interaction | molecular_function | 2326 transcript expression level evidence | fission_yeast_phenotype | 3010 Western blot assay | fission_yeast_phenotype | 3121 Inferred from Mutant Phenotype | biological_process | 4020 Inferred from Direct Assay | cellular_component | 4821 Inferred from high throughput direct assay | cellular_component | 6900 experimental evidence | PSI-MOD | 8141 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16383 experimental evidence | gene_ex | 20340 cell growth assay evidence | fission_yeast_phenotype | 27009 Microscopy | fission_yeast_phenotype | 32693 (111 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- cell growth assay evidence | fission_yeast_phenotype | 27009 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1130 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 707 competitive growth assay evidence | fission_yeast_phenotype | 880 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 133 Enzyme assay data | fission_yeast_phenotype | 1629 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 29 experimental evidence | gene_ex | 20340 experimental evidence | PSI-MOD | 8141 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2017 Flow cytometry data | fission_yeast_phenotype | 1013 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 2057 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1128 Inferred by Curator | cellular_component | 488 Inferred by Curator | molecular_function | 112 Inferred from Biological aspect of Ancestor | biological_process | 87 Inferred from Direct Assay | biological_process | 670 Inferred from Direct Assay | cellular_component | 4821 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1743 Inferred from Direct Assay | PSI-MOD | 16383 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | biological_process | 534 Inferred from Electronic Annotation | cellular_component | 1003 Inferred from Electronic Annotation | molecular_function | 1828 Inferred from Experiment | biological_process | 188 Inferred from Experiment | cellular_component | 149 Inferred from Experiment | molecular_function | 357 Inferred from Expression Pattern | biological_process | 28 Inferred from Genetic Interaction | biological_process | 666 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Genetic Interaction | molecular_function | 134 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6900 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 4020 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 632 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 107 Inferred from Physical Interaction | cellular_component | 242 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2326 Inferred from Sequence Model | biological_process | 198 Inferred from Sequence Model | cellular_component | 99 Inferred from Sequence Model | molecular_function | 1262 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | biological_process | 588 Inferred from Sequence or Structural Similarity | cellular_component | 421 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 467 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence Orthology | biological_process | 2298 Inferred from Sequence Orthology | cellular_component | 1528 Inferred from Sequence Orthology | molecular_function | 1411 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 mass spectrometry evidence | PSI-MOD | 1173 Microscopy | fission_yeast_phenotype | 32693 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Non-traceable Author Statement | biological_process | 400 Non-traceable Author Statement | cellular_component | 183 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 151 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 37 northern assay evidence used in manual assertion | gene_ex | 789 Other | fission_yeast_phenotype | 1448 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 19 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 437 quantitative PCR | gene_ex | 83 reporter gene assay evidence | fission_yeast_phenotype | 1881 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 928 Substance quantification evidence | fission_yeast_phenotype | 1 Traceable Author Statement | biological_process | 164 Traceable Author Statement | cellular_component | 107 Traceable Author Statement | molecular_function | 142 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 transcript expression level evidence | fission_yeast_phenotype | 3010 transcript expression level evidence | gene_ex | 13 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Western blot assay | fission_yeast_phenotype | 3121 Western blot evidence | gene_ex | 18 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 430 (111 rows) total: count -------- 287579 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1190 | PSI-MOD 2091 | molecular_function 2445 | cellular_component 3174 | biological_process 23806 | PomBase annotation extension terms 29704 | fission_yeast_phenotype (6 rows) total ------- 62410 (1 row)