counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 21 | ex_tools 29 | cat_act 30 | pathway 90 | m_f_g 182 | subunit_composition 237 | genome_org 393 | misc 419 | complementation 835 | EC numbers 949 | name_description 954 | sequence 1132 | disease_associated 1277 | disease_ontology 1730 | warning 1868 | PomBase family or domain 5137 | PomBase gene characterisation status 11077 | biological_process 12048 | molecular_function 16035 | cellular_component 25051 | species_dist 35288 | PSI-MOD 37722 | gene_ex 56345 | PomBase gene products 80439 | fission_yeast_phenotype (25 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 1128 Inferred from Biological aspect of Ancestor | biological_process | 87 Inferred from Direct Assay | biological_process | 675 Inferred from Electronic Annotation | biological_process | 544 Inferred from Experiment | biological_process | 188 Inferred from Expression Pattern | biological_process | 27 Inferred from Genetic Interaction | biological_process | 665 Inferred from high throughput direct assay | biological_process | 17 Inferred from Mutant Phenotype | biological_process | 3998 Inferred from Physical Interaction | biological_process | 107 Inferred from Sequence Model | biological_process | 199 Inferred from Sequence or Structural Similarity | biological_process | 587 Inferred from Sequence Orthology | biological_process | 2291 Non-traceable Author Statement | biological_process | 399 Traceable Author Statement | biological_process | 165 Inferred by Curator | cellular_component | 488 Inferred from Direct Assay | cellular_component | 4828 Inferred from Electronic Annotation | cellular_component | 1004 Inferred from Experiment | cellular_component | 149 Inferred from Genetic Interaction | cellular_component | 49 Inferred from high throughput direct assay | cellular_component | 6893 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Physical Interaction | cellular_component | 242 Inferred from Sequence Model | cellular_component | 99 Inferred from Sequence or Structural Similarity | cellular_component | 422 Inferred from Sequence Orthology | cellular_component | 1526 Non-traceable Author Statement | cellular_component | 183 Traceable Author Statement | cellular_component | 107 Non-traceable Author Statement | complementation | 1 cell growth assay evidence | fission_yeast_phenotype | 27315 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1141 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 708 competitive growth assay evidence | fission_yeast_phenotype | 880 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 144 Enzyme assay data | fission_yeast_phenotype | 1659 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 experimental phenotypic evidence | fission_yeast_phenotype | 493 Flow cytometry data | fission_yeast_phenotype | 1018 gel electrophoresis evidence | fission_yeast_phenotype | 2059 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 32741 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1449 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 19 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 446 reporter gene assay evidence | fission_yeast_phenotype | 1887 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Substance quantification | fission_yeast_phenotype | 950 Substance quantification evidence | fission_yeast_phenotype | 1 transcript expression level evidence | fission_yeast_phenotype | 3007 Western blot assay | fission_yeast_phenotype | 3175 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 experimental evidence | gene_ex | 20340 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 Northern assay evidence | gene_ex | 37 northern assay evidence used in manual assertion | gene_ex | 789 quantitative PCR | gene_ex | 83 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 13 Western blot evidence | gene_ex | 19 western blot evidence used in manual assertion | gene_ex | 430 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 97 Inferred from Direct Assay | molecular_function | 1738 Inferred from Electronic Annotation | molecular_function | 1853 Inferred from Experiment | molecular_function | 358 Inferred from Genetic Interaction | molecular_function | 134 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 564 Inferred from Physical Interaction | molecular_function | 2327 Inferred from Sequence Model | molecular_function | 1258 Inferred from Sequence or Structural Similarity | molecular_function | 467 Inferred from Sequence Orthology | molecular_function | 1406 Non-traceable Author Statement | molecular_function | 152 Traceable Author Statement | molecular_function | 141 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | PSI-MOD | 16383 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 mass spectrometry evidence | PSI-MOD | 1173 Traceable Author Statement | PSI-MOD | 1 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (111 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Substance quantification evidence | fission_yeast_phenotype | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 Inferred from Key Residues | molecular_function | 1 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 transcript expression level evidence | gene_ex | 13 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | molecular_function | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 Particle size and count assay | fission_yeast_phenotype | 19 Western blot evidence | gene_ex | 19 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 RNA protection assay evidence | gene_ex | 25 Inferred from Expression Pattern | biological_process | 27 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 ribosome profiling evidence | gene_ex | 32 Northern assay evidence | gene_ex | 37 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Genetic Interaction | cellular_component | 49 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 Chromatography evidence | fission_yeast_phenotype | 55 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | gene_ex | 83 Inferred from Biological aspect of Ancestor | biological_process | 87 Inferred by Curator | molecular_function | 97 Inferred from Sequence Model | cellular_component | 99 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Physical Interaction | biological_process | 107 Traceable Author Statement | cellular_component | 107 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 134 Traceable Author Statement | molecular_function | 141 reporter gene assay evidence | gene_ex | 144 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 144 Inferred from Experiment | cellular_component | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Non-traceable Author Statement | molecular_function | 152 Traceable Author Statement | biological_process | 165 Non-traceable Author Statement | cellular_component | 183 Inferred from Experiment | biological_process | 188 Inferred from Sequence Model | biological_process | 199 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Physical Interaction | cellular_component | 242 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Experiment | molecular_function | 358 Non-traceable Author Statement | biological_process | 399 Inferred from Sequence or Structural Similarity | cellular_component | 422 western blot evidence used in manual assertion | gene_ex | 430 quantitative PCR | fission_yeast_phenotype | 446 Inferred from Sequence or Structural Similarity | molecular_function | 467 Inferred by Curator | cellular_component | 488 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Electronic Annotation | biological_process | 544 Inferred from Mutant Phenotype | molecular_function | 564 Inferred from Sequence or Structural Similarity | biological_process | 587 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Inferred from Genetic Interaction | biological_process | 665 Inferred from Direct Assay | biological_process | 675 Co-immunoprecipitation experiment | fission_yeast_phenotype | 708 northern assay evidence used in manual assertion | gene_ex | 789 competitive growth assay evidence | fission_yeast_phenotype | 880 Substance quantification | fission_yeast_phenotype | 950 Inferred from Electronic Annotation | cellular_component | 1004 Flow cytometry data | fission_yeast_phenotype | 1018 Inferred by Curator | biological_process | 1128 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1141 mass spectrometry evidence | PSI-MOD | 1173 Inferred from Sequence Model | molecular_function | 1258 Inferred from Sequence Orthology | molecular_function | 1406 Other | fission_yeast_phenotype | 1449 Inferred from Sequence Orthology | cellular_component | 1526 Inferred from high throughput mutant phenotype | molecular_function | 1535 Enzyme assay data | fission_yeast_phenotype | 1659 Inferred from Direct Assay | molecular_function | 1738 Inferred from Electronic Annotation | molecular_function | 1853 reporter gene assay evidence | fission_yeast_phenotype | 1887 expression microarray evidence | gene_ex | 2017 gel electrophoresis evidence | fission_yeast_phenotype | 2059 Inferred from Sequence Orthology | biological_process | 2291 Inferred from Physical Interaction | molecular_function | 2327 transcript expression level evidence | fission_yeast_phenotype | 3007 Western blot assay | fission_yeast_phenotype | 3175 Inferred from Mutant Phenotype | biological_process | 3998 Inferred from Direct Assay | cellular_component | 4828 Inferred from high throughput direct assay | cellular_component | 6893 experimental evidence | PSI-MOD | 8141 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16383 experimental evidence | gene_ex | 20340 cell growth assay evidence | fission_yeast_phenotype | 27315 Microscopy | fission_yeast_phenotype | 32741 (111 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- cell growth assay evidence | fission_yeast_phenotype | 27315 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1141 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 708 competitive growth assay evidence | fission_yeast_phenotype | 880 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 144 Enzyme assay data | fission_yeast_phenotype | 1659 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 experimental evidence | gene_ex | 20340 experimental evidence | PSI-MOD | 8141 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2017 Flow cytometry data | fission_yeast_phenotype | 1018 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 2059 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1128 Inferred by Curator | cellular_component | 488 Inferred by Curator | molecular_function | 97 Inferred from Biological aspect of Ancestor | biological_process | 87 Inferred from Direct Assay | biological_process | 675 Inferred from Direct Assay | cellular_component | 4828 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1738 Inferred from Direct Assay | PSI-MOD | 16383 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | biological_process | 544 Inferred from Electronic Annotation | cellular_component | 1004 Inferred from Electronic Annotation | molecular_function | 1853 Inferred from Experiment | biological_process | 188 Inferred from Experiment | cellular_component | 149 Inferred from Experiment | molecular_function | 358 Inferred from Expression Pattern | biological_process | 27 Inferred from Genetic Interaction | biological_process | 665 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Genetic Interaction | molecular_function | 134 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6893 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 3998 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 564 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 107 Inferred from Physical Interaction | cellular_component | 242 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2327 Inferred from Sequence Model | biological_process | 199 Inferred from Sequence Model | cellular_component | 99 Inferred from Sequence Model | molecular_function | 1258 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | biological_process | 587 Inferred from Sequence or Structural Similarity | cellular_component | 422 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 467 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence Orthology | biological_process | 2291 Inferred from Sequence Orthology | cellular_component | 1526 Inferred from Sequence Orthology | molecular_function | 1406 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 mass spectrometry evidence | PSI-MOD | 1173 Microscopy | fission_yeast_phenotype | 32741 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Non-traceable Author Statement | biological_process | 399 Non-traceable Author Statement | cellular_component | 183 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 152 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 37 northern assay evidence used in manual assertion | gene_ex | 789 Other | fission_yeast_phenotype | 1449 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 19 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 446 quantitative PCR | gene_ex | 83 reporter gene assay evidence | fission_yeast_phenotype | 1887 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 950 Substance quantification evidence | fission_yeast_phenotype | 1 Traceable Author Statement | biological_process | 165 Traceable Author Statement | cellular_component | 107 Traceable Author Statement | molecular_function | 141 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 transcript expression level evidence | fission_yeast_phenotype | 3007 transcript expression level evidence | gene_ex | 13 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Western blot assay | fission_yeast_phenotype | 3175 Western blot evidence | gene_ex | 19 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 430 (111 rows) total: count -------- 289294 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1190 | PSI-MOD 2091 | molecular_function 2450 | cellular_component 3159 | biological_process 24005 | PomBase annotation extension terms 29833 | fission_yeast_phenotype (6 rows) total ------- 62728 (1 row)