counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
21 | ex_tools
29 | cat_act
30 | pathway
90 | m_f_g
182 | subunit_composition
237 | genome_org
393 | misc
419 | complementation
835 | EC numbers
951 | name_description
954 | sequence
1231 | disease_ontology
1251 | disease_associated
1730 | warning
1866 | PomBase family or domain
5137 | PomBase gene characterisation status
11105 | biological_process
12156 | molecular_function
16058 | cellular_component
25050 | species_dist
35297 | PSI-MOD
37731 | gene_ex
56355 | PomBase gene products
80950 | fission_yeast_phenotype
(25 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred by Curator | biological_process | 1129
Inferred from Biological aspect of Ancestor | biological_process | 91
Inferred from Direct Assay | biological_process | 672
Inferred from Electronic Annotation | biological_process | 551
Inferred from Experiment | biological_process | 194
Inferred from Expression Pattern | biological_process | 27
Inferred from Genetic Interaction | biological_process | 663
Inferred from high throughput direct assay | biological_process | 17
Inferred from Mutant Phenotype | biological_process | 4018
Inferred from Physical Interaction | biological_process | 108
Inferred from Sequence Model | biological_process | 197
Inferred from Sequence or Structural Similarity | biological_process | 586
Inferred from Sequence Orthology | biological_process | 2289
Non-traceable Author Statement | biological_process | 398
Traceable Author Statement | biological_process | 165
Inferred by Curator | cellular_component | 489
Inferred from Direct Assay | cellular_component | 4856
Inferred from Electronic Annotation | cellular_component | 1010
Inferred from Experiment | cellular_component | 149
Inferred from Genetic Interaction | cellular_component | 47
Inferred from high throughput direct assay | cellular_component | 6889
Inferred from Mutant Phenotype | cellular_component | 45
Inferred from Physical Interaction | cellular_component | 239
Inferred from Sequence Model | cellular_component | 99
Inferred from Sequence or Structural Similarity | cellular_component | 421
Inferred from Sequence Orthology | cellular_component | 1524
Non-traceable Author Statement | cellular_component | 183
Traceable Author Statement | cellular_component | 107
Non-traceable Author Statement | complementation | 1
cell growth assay evidence | fission_yeast_phenotype | 27412
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1175
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 708
competitive growth assay evidence | fission_yeast_phenotype | 880
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 144
Enzyme assay data | fission_yeast_phenotype | 1662
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
experimental phenotypic evidence | fission_yeast_phenotype | 493
Flow cytometry data | fission_yeast_phenotype | 1023
gel electrophoresis evidence | fission_yeast_phenotype | 2076
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Immunolocalization experiment data | fission_yeast_phenotype | 18
Microscopy | fission_yeast_phenotype | 32865
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1459
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 19
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 540
reporter gene assay evidence | fission_yeast_phenotype | 1903
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Substance quantification | fission_yeast_phenotype | 963
transcript expression level evidence | fission_yeast_phenotype | 3023
Western blot assay | fission_yeast_phenotype | 3258
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
experimental evidence | gene_ex | 20340
expression microarray evidence | gene_ex | 2017
fusion protein localization evidence | gene_ex | 10
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
Northern assay evidence | gene_ex | 37
northern assay evidence used in manual assertion | gene_ex | 789
quantitative PCR | gene_ex | 85
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 25
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | gene_ex | 13
Western blot evidence | gene_ex | 19
western blot evidence used in manual assertion | gene_ex | 437
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 112
Inferred from Direct Assay | molecular_function | 1748
Inferred from Electronic Annotation | molecular_function | 1854
Inferred from Experiment | molecular_function | 362
Inferred from Genetic Interaction | molecular_function | 133
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 634
Inferred from Physical Interaction | molecular_function | 2327
Inferred from Sequence Model | molecular_function | 1263
Inferred from Sequence or Structural Similarity | molecular_function | 466
Inferred from Sequence Orthology | molecular_function | 1410
Non-traceable Author Statement | molecular_function | 153
Traceable Author Statement | molecular_function | 141
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
experimental evidence | PSI-MOD | 8141
Inferred from Direct Assay | PSI-MOD | 16392
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
mass spectrometry evidence | PSI-MOD | 1173
Traceable Author Statement | PSI-MOD | 1
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Inferred from Direct Assay | sequence | 3
Inferred from Mutant Phenotype | sequence | 7
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 3
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
(110 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Direct Assay | misc | 1
Inferred from Key Residues | molecular_function | 1
Non-traceable Author Statement | complementation | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Traceable Author Statement | sequence | 2
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Physical Interaction | misc | 2
Inferred from Direct Assay | sequence | 3
Inferred from Direct Assay | subunit_composition | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
Inferred from Mutant Phenotype | sequence | 7
Other direct assay | fission_yeast_phenotype | 9
fusion protein localization evidence | gene_ex | 10
transcript expression level evidence | gene_ex | 13
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput direct assay | biological_process | 17
Immunolocalization experiment data | fission_yeast_phenotype | 18
Particle size and count assay | fission_yeast_phenotype | 19
Western blot evidence | gene_ex | 19
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
RNA protection assay evidence | gene_ex | 25
Inferred from Expression Pattern | biological_process | 27
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
ribosome profiling evidence | gene_ex | 32
Northern assay evidence | gene_ex | 37
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Mutant Phenotype | cellular_component | 45
Inferred from Genetic Interaction | cellular_component | 47
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
Chromatography evidence | fission_yeast_phenotype | 55
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | gene_ex | 85
Inferred from Biological aspect of Ancestor | biological_process | 91
Inferred from Sequence Model | cellular_component | 99
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | warning | 102
Traceable Author Statement | cellular_component | 107
Inferred from Physical Interaction | biological_process | 108
Inferred by Curator | molecular_function | 112
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 133
Traceable Author Statement | molecular_function | 141
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 144
reporter gene assay evidence | gene_ex | 144
Inferred from Experiment | cellular_component | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
Non-traceable Author Statement | molecular_function | 153
Traceable Author Statement | biological_process | 165
Non-traceable Author Statement | cellular_component | 183
Inferred from Experiment | biological_process | 194
Inferred from Sequence Model | biological_process | 197
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Physical Interaction | cellular_component | 239
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Experiment | molecular_function | 362
Non-traceable Author Statement | biological_process | 398
Inferred from Sequence or Structural Similarity | cellular_component | 421
western blot evidence used in manual assertion | gene_ex | 437
Inferred from Sequence or Structural Similarity | molecular_function | 466
Inferred by Curator | cellular_component | 489
experimental phenotypic evidence | fission_yeast_phenotype | 493
quantitative PCR | fission_yeast_phenotype | 540
Inferred from Electronic Annotation | biological_process | 551
Inferred from Sequence or Structural Similarity | biological_process | 586
Inferred from Mutant Phenotype | molecular_function | 634
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Inferred from Genetic Interaction | biological_process | 663
Inferred from Direct Assay | biological_process | 672
Co-immunoprecipitation experiment | fission_yeast_phenotype | 708
northern assay evidence used in manual assertion | gene_ex | 789
competitive growth assay evidence | fission_yeast_phenotype | 880
Substance quantification | fission_yeast_phenotype | 963
Inferred from Electronic Annotation | cellular_component | 1010
Flow cytometry data | fission_yeast_phenotype | 1023
Inferred by Curator | biological_process | 1129
mass spectrometry evidence | PSI-MOD | 1173
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1175
Inferred from Sequence Model | molecular_function | 1263
Inferred from Sequence Orthology | molecular_function | 1410
Other | fission_yeast_phenotype | 1459
Inferred from Sequence Orthology | cellular_component | 1524
Inferred from high throughput mutant phenotype | molecular_function | 1535
Enzyme assay data | fission_yeast_phenotype | 1662
Inferred from Direct Assay | molecular_function | 1748
Inferred from Electronic Annotation | molecular_function | 1854
reporter gene assay evidence | fission_yeast_phenotype | 1903
expression microarray evidence | gene_ex | 2017
gel electrophoresis evidence | fission_yeast_phenotype | 2076
Inferred from Sequence Orthology | biological_process | 2289
Inferred from Physical Interaction | molecular_function | 2327
transcript expression level evidence | fission_yeast_phenotype | 3023
Western blot assay | fission_yeast_phenotype | 3258
Inferred from Mutant Phenotype | biological_process | 4018
Inferred from Direct Assay | cellular_component | 4856
Inferred from high throughput direct assay | cellular_component | 6889
experimental evidence | PSI-MOD | 8141
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
mass spectrometry evidence | gene_ex | 13688
Inferred from Direct Assay | PSI-MOD | 16392
experimental evidence | gene_ex | 20340
cell growth assay evidence | fission_yeast_phenotype | 27412
Microscopy | fission_yeast_phenotype | 32865
(110 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
cell growth assay evidence | fission_yeast_phenotype | 27412
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1175
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 708
competitive growth assay evidence | fission_yeast_phenotype | 880
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 144
Enzyme assay data | fission_yeast_phenotype | 1662
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
experimental evidence | gene_ex | 20340
experimental evidence | PSI-MOD | 8141
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 2017
Flow cytometry data | fission_yeast_phenotype | 1023
fusion protein localization evidence | gene_ex | 10
gel electrophoresis evidence | fission_yeast_phenotype | 2076
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred by Curator | biological_process | 1129
Inferred by Curator | cellular_component | 489
Inferred by Curator | molecular_function | 112
Inferred from Biological aspect of Ancestor | biological_process | 91
Inferred from Direct Assay | biological_process | 672
Inferred from Direct Assay | cellular_component | 4856
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1748
Inferred from Direct Assay | PSI-MOD | 16392
Inferred from Direct Assay | sequence | 3
Inferred from Direct Assay | subunit_composition | 3
Inferred from Electronic Annotation | biological_process | 551
Inferred from Electronic Annotation | cellular_component | 1010
Inferred from Electronic Annotation | molecular_function | 1854
Inferred from Experiment | biological_process | 194
Inferred from Experiment | cellular_component | 149
Inferred from Experiment | molecular_function | 362
Inferred from Expression Pattern | biological_process | 27
Inferred from Genetic Interaction | biological_process | 663
Inferred from Genetic Interaction | cellular_component | 47
Inferred from Genetic Interaction | molecular_function | 133
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6889
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | biological_process | 4018
Inferred from Mutant Phenotype | cellular_component | 45
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 634
Inferred from Mutant Phenotype | sequence | 7
Inferred from Physical Interaction | biological_process | 108
Inferred from Physical Interaction | cellular_component | 239
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2327
Inferred from Sequence Model | biological_process | 197
Inferred from Sequence Model | cellular_component | 99
Inferred from Sequence Model | molecular_function | 1263
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | biological_process | 586
Inferred from Sequence or Structural Similarity | cellular_component | 421
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 466
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
Inferred from Sequence Orthology | biological_process | 2289
Inferred from Sequence Orthology | cellular_component | 1524
Inferred from Sequence Orthology | molecular_function | 1410
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
mass spectrometry evidence | PSI-MOD | 1173
Microscopy | fission_yeast_phenotype | 32865
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Non-traceable Author Statement | biological_process | 398
Non-traceable Author Statement | cellular_component | 183
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 153
Northern assay evidence | fission_yeast_phenotype | 118
Northern assay evidence | gene_ex | 37
northern assay evidence used in manual assertion | gene_ex | 789
Other | fission_yeast_phenotype | 1459
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 19
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 540
quantitative PCR | gene_ex | 85
reporter gene assay evidence | fission_yeast_phenotype | 1903
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 25
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Substance quantification | fission_yeast_phenotype | 963
Traceable Author Statement | biological_process | 165
Traceable Author Statement | cellular_component | 107
Traceable Author Statement | molecular_function | 141
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | sequence | 2
transcript expression level evidence | fission_yeast_phenotype | 3023
transcript expression level evidence | gene_ex | 13
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Western blot assay | fission_yeast_phenotype | 3258
Western blot evidence | gene_ex | 19
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
western blot evidence used in manual assertion | gene_ex | 437
(110 rows)
total:
count
--------
290064
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
1190 | PSI-MOD
2097 | molecular_function
2462 | cellular_component
3179 | biological_process
24343 | PomBase annotation extension terms
30044 | fission_yeast_phenotype
(6 rows)
total
-------
63315
(1 row)