counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 21 | ex_tools 29 | cat_act 30 | pathway 90 | m_f_g 183 | subunit_composition 237 | genome_org 394 | misc 422 | complementation 835 | EC numbers 952 | name_description 954 | sequence 1732 | warning 1866 | PomBase family or domain 2414 | disease_ontology 5138 | PomBase gene characterisation status 11089 | biological_process 12192 | molecular_function 16121 | cellular_component 25065 | species_dist 35299 | PSI-MOD 37733 | gene_ex 56439 | PomBase gene products 81739 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 1137 Inferred from Biological aspect of Ancestor | biological_process | 84 Inferred from Direct Assay | biological_process | 687 Inferred from Electronic Annotation | biological_process | 536 Inferred from Experiment | biological_process | 197 Inferred from Expression Pattern | biological_process | 27 Inferred from Genetic Interaction | biological_process | 653 Inferred from high throughput direct assay | biological_process | 17 Inferred from Mutant Phenotype | biological_process | 4007 Inferred from Physical Interaction | biological_process | 110 Inferred from Sequence Model | biological_process | 197 Inferred from Sequence or Structural Similarity | biological_process | 589 Inferred from Sequence Orthology | biological_process | 2288 Non-traceable Author Statement | biological_process | 397 Traceable Author Statement | biological_process | 163 Inferred by Curator | cellular_component | 529 Inferred from Direct Assay | cellular_component | 4892 Inferred from Electronic Annotation | cellular_component | 1004 Inferred from Experiment | cellular_component | 161 Inferred from Genetic Interaction | cellular_component | 47 Inferred from high throughput direct assay | cellular_component | 6882 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Physical Interaction | cellular_component | 241 Inferred from Sequence Model | cellular_component | 100 Inferred from Sequence or Structural Similarity | cellular_component | 414 Inferred from Sequence Orthology | cellular_component | 1510 Non-traceable Author Statement | cellular_component | 187 Traceable Author Statement | cellular_component | 109 Non-traceable Author Statement | complementation | 1 cell growth assay evidence | fission_yeast_phenotype | 27706 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1235 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 745 competitive growth assay evidence | fission_yeast_phenotype | 880 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 144 Enzyme assay data | fission_yeast_phenotype | 1687 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 experimental phenotypic evidence | fission_yeast_phenotype | 493 Flow cytometry data | fission_yeast_phenotype | 1036 gel electrophoresis evidence | fission_yeast_phenotype | 2084 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 33073 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1493 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 19 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 540 reporter gene assay evidence | fission_yeast_phenotype | 1923 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Substance quantification | fission_yeast_phenotype | 970 transcript expression level evidence | fission_yeast_phenotype | 3079 Western blot assay | fission_yeast_phenotype | 3285 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 experimental evidence | gene_ex | 20340 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 Northern assay evidence | gene_ex | 37 northern assay evidence used in manual assertion | gene_ex | 791 quantitative PCR | gene_ex | 85 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 13 Western blot evidence | gene_ex | 19 western blot evidence used in manual assertion | gene_ex | 437 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 121 Inferred from Direct Assay | molecular_function | 1777 Inferred from Electronic Annotation | molecular_function | 1839 Inferred from Experiment | molecular_function | 364 Inferred from Genetic Interaction | molecular_function | 133 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 634 Inferred from Physical Interaction | molecular_function | 2340 Inferred from Sequence Model | molecular_function | 1259 Inferred from Sequence or Structural Similarity | molecular_function | 470 Inferred from Sequence Orthology | molecular_function | 1410 Non-traceable Author Statement | molecular_function | 151 Traceable Author Statement | molecular_function | 141 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | PSI-MOD | 16394 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 mass spectrometry evidence | PSI-MOD | 1173 Traceable Author Statement | PSI-MOD | 1 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (110 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Inferred from Key Residues | molecular_function | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Traceable Author Statement | sequence | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 transcript expression level evidence | gene_ex | 13 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput direct assay | biological_process | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 Particle size and count assay | fission_yeast_phenotype | 19 Western blot evidence | gene_ex | 19 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 RNA protection assay evidence | gene_ex | 25 Inferred from Expression Pattern | biological_process | 27 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 ribosome profiling evidence | gene_ex | 32 Northern assay evidence | gene_ex | 37 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Genetic Interaction | cellular_component | 47 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 Chromatography evidence | fission_yeast_phenotype | 55 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Inferred from Biological aspect of Ancestor | biological_process | 84 quantitative PCR | gene_ex | 85 Inferred from Sequence Model | cellular_component | 100 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 102 Traceable Author Statement | cellular_component | 109 Inferred from Physical Interaction | biological_process | 110 Northern assay evidence | fission_yeast_phenotype | 118 Inferred by Curator | molecular_function | 121 Inferred from Genetic Interaction | molecular_function | 133 Traceable Author Statement | molecular_function | 141 reporter gene assay evidence | gene_ex | 144 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 144 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Non-traceable Author Statement | molecular_function | 151 Inferred from Experiment | cellular_component | 161 Traceable Author Statement | biological_process | 163 Non-traceable Author Statement | cellular_component | 187 Inferred from Sequence Model | biological_process | 197 Inferred from Experiment | biological_process | 197 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Physical Interaction | cellular_component | 241 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Experiment | molecular_function | 364 Non-traceable Author Statement | biological_process | 397 Inferred from Sequence or Structural Similarity | cellular_component | 414 western blot evidence used in manual assertion | gene_ex | 437 Inferred from Sequence or Structural Similarity | molecular_function | 470 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred by Curator | cellular_component | 529 Inferred from Electronic Annotation | biological_process | 536 quantitative PCR | fission_yeast_phenotype | 540 Inferred from Sequence or Structural Similarity | biological_process | 589 Inferred from Mutant Phenotype | molecular_function | 634 Inferred from Genetic Interaction | biological_process | 653 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Inferred from Direct Assay | biological_process | 687 Co-immunoprecipitation experiment | fission_yeast_phenotype | 745 northern assay evidence used in manual assertion | gene_ex | 791 competitive growth assay evidence | fission_yeast_phenotype | 880 Substance quantification | fission_yeast_phenotype | 970 Inferred from Electronic Annotation | cellular_component | 1004 Flow cytometry data | fission_yeast_phenotype | 1036 Inferred by Curator | biological_process | 1137 mass spectrometry evidence | PSI-MOD | 1173 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1235 Inferred from Sequence Model | molecular_function | 1259 Inferred from Sequence Orthology | molecular_function | 1410 Other | fission_yeast_phenotype | 1493 Inferred from Sequence Orthology | cellular_component | 1510 Inferred from high throughput mutant phenotype | molecular_function | 1535 Enzyme assay data | fission_yeast_phenotype | 1687 Inferred from Direct Assay | molecular_function | 1777 Inferred from Electronic Annotation | molecular_function | 1839 reporter gene assay evidence | fission_yeast_phenotype | 1923 expression microarray evidence | gene_ex | 2017 gel electrophoresis evidence | fission_yeast_phenotype | 2084 Inferred from Sequence Orthology | biological_process | 2288 Inferred from Physical Interaction | molecular_function | 2340 transcript expression level evidence | fission_yeast_phenotype | 3079 Western blot assay | fission_yeast_phenotype | 3285 Inferred from Mutant Phenotype | biological_process | 4007 Inferred from Direct Assay | cellular_component | 4892 Inferred from high throughput direct assay | cellular_component | 6882 experimental evidence | PSI-MOD | 8141 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16394 experimental evidence | gene_ex | 20340 cell growth assay evidence | fission_yeast_phenotype | 27706 Microscopy | fission_yeast_phenotype | 33073 (110 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- cell growth assay evidence | fission_yeast_phenotype | 27706 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1235 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 745 competitive growth assay evidence | fission_yeast_phenotype | 880 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 144 Enzyme assay data | fission_yeast_phenotype | 1687 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 experimental evidence | gene_ex | 20340 experimental evidence | PSI-MOD | 8141 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2017 Flow cytometry data | fission_yeast_phenotype | 1036 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 2084 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1137 Inferred by Curator | cellular_component | 529 Inferred by Curator | molecular_function | 121 Inferred from Biological aspect of Ancestor | biological_process | 84 Inferred from Direct Assay | biological_process | 687 Inferred from Direct Assay | cellular_component | 4892 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1777 Inferred from Direct Assay | PSI-MOD | 16394 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | biological_process | 536 Inferred from Electronic Annotation | cellular_component | 1004 Inferred from Electronic Annotation | molecular_function | 1839 Inferred from Experiment | biological_process | 197 Inferred from Experiment | cellular_component | 161 Inferred from Experiment | molecular_function | 364 Inferred from Expression Pattern | biological_process | 27 Inferred from Genetic Interaction | biological_process | 653 Inferred from Genetic Interaction | cellular_component | 47 Inferred from Genetic Interaction | molecular_function | 133 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6882 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 4007 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 634 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 110 Inferred from Physical Interaction | cellular_component | 241 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2340 Inferred from Sequence Model | biological_process | 197 Inferred from Sequence Model | cellular_component | 100 Inferred from Sequence Model | molecular_function | 1259 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | biological_process | 589 Inferred from Sequence or Structural Similarity | cellular_component | 414 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 470 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence Orthology | biological_process | 2288 Inferred from Sequence Orthology | cellular_component | 1510 Inferred from Sequence Orthology | molecular_function | 1410 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 mass spectrometry evidence | PSI-MOD | 1173 Microscopy | fission_yeast_phenotype | 33073 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Non-traceable Author Statement | biological_process | 397 Non-traceable Author Statement | cellular_component | 187 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 151 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 37 northern assay evidence used in manual assertion | gene_ex | 791 Other | fission_yeast_phenotype | 1493 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 19 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 540 quantitative PCR | gene_ex | 85 reporter gene assay evidence | fission_yeast_phenotype | 1923 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 970 Traceable Author Statement | biological_process | 163 Traceable Author Statement | cellular_component | 109 Traceable Author Statement | molecular_function | 141 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 transcript expression level evidence | fission_yeast_phenotype | 3079 transcript expression level evidence | gene_ex | 13 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Western blot assay | fission_yeast_phenotype | 3285 Western blot evidence | gene_ex | 19 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 437 (110 rows) total: count -------- 290980 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1190 | PSI-MOD 2124 | molecular_function 2514 | cellular_component 3209 | biological_process 24721 | PomBase annotation extension terms 30499 | fission_yeast_phenotype (6 rows) total ------- 64257 (1 row)