counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
21 | ex_tools
29 | cat_act
30 | pathway
90 | m_f_g
183 | subunit_composition
237 | genome_org
398 | misc
422 | complementation
835 | EC numbers
952 | name_description
954 | sequence
1732 | warning
1866 | PomBase family or domain
2414 | disease_ontology
5138 | PomBase gene characterisation status
11103 | biological_process
12220 | molecular_function
16125 | cellular_component
25065 | species_dist
35306 | PSI-MOD
37733 | gene_ex
56444 | PomBase gene products
82019 | fission_yeast_phenotype
(24 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred by Curator | biological_process | 1137
Inferred from Biological aspect of Ancestor | biological_process | 84
Inferred from Direct Assay | biological_process | 695
Inferred from Electronic Annotation | biological_process | 533
Inferred from Experiment | biological_process | 197
Inferred from Expression Pattern | biological_process | 27
Inferred from Genetic Interaction | biological_process | 654
Inferred from high throughput direct assay | biological_process | 17
Inferred from Mutant Phenotype | biological_process | 4011
Inferred from Physical Interaction | biological_process | 110
Inferred from Sequence Model | biological_process | 197
Inferred from Sequence or Structural Similarity | biological_process | 589
Inferred from Sequence Orthology | biological_process | 2288
Non-traceable Author Statement | biological_process | 401
Traceable Author Statement | biological_process | 163
Inferred by Curator | cellular_component | 529
Inferred from Direct Assay | cellular_component | 4901
Inferred from Electronic Annotation | cellular_component | 996
Inferred from Experiment | cellular_component | 161
Inferred from Genetic Interaction | cellular_component | 49
Inferred from high throughput direct assay | cellular_component | 6882
Inferred from Mutant Phenotype | cellular_component | 45
Inferred from Physical Interaction | cellular_component | 242
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence or Structural Similarity | cellular_component | 414
Inferred from Sequence Orthology | cellular_component | 1509
Non-traceable Author Statement | cellular_component | 187
Traceable Author Statement | cellular_component | 109
Non-traceable Author Statement | complementation | 1
cell growth assay evidence | fission_yeast_phenotype | 27739
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1297
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 746
competitive growth assay evidence | fission_yeast_phenotype | 880
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 144
Enzyme assay data | fission_yeast_phenotype | 1691
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
experimental phenotypic evidence | fission_yeast_phenotype | 493
Flow cytometry data | fission_yeast_phenotype | 1038
gel electrophoresis evidence | fission_yeast_phenotype | 2088
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Immunolocalization experiment data | fission_yeast_phenotype | 18
Microscopy | fission_yeast_phenotype | 33121
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1494
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 19
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 540
reporter gene assay evidence | fission_yeast_phenotype | 2067
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Substance quantification | fission_yeast_phenotype | 938
transcript expression level evidence | fission_yeast_phenotype | 3082
Western blot assay | fission_yeast_phenotype | 3295
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
experimental evidence | gene_ex | 20340
expression microarray evidence | gene_ex | 2017
fusion protein localization evidence | gene_ex | 10
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
Northern assay evidence | gene_ex | 37
northern assay evidence used in manual assertion | gene_ex | 791
quantitative PCR | gene_ex | 85
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 25
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | gene_ex | 13
Western blot evidence | gene_ex | 19
western blot evidence used in manual assertion | gene_ex | 437
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 120
Inferred from Direct Assay | molecular_function | 1782
Inferred from Electronic Annotation | molecular_function | 1840
Inferred from Experiment | molecular_function | 367
Inferred from Genetic Interaction | molecular_function | 134
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 636
Inferred from Physical Interaction | molecular_function | 2354
Inferred from Sequence Model | molecular_function | 1260
Inferred from Sequence or Structural Similarity | molecular_function | 469
Inferred from Sequence Orthology | molecular_function | 1407
Non-traceable Author Statement | molecular_function | 153
Traceable Author Statement | molecular_function | 145
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
experimental evidence | PSI-MOD | 8141
Inferred from Direct Assay | PSI-MOD | 16402
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
mass spectrometry evidence | PSI-MOD | 1173
Traceable Author Statement | PSI-MOD | 1
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Inferred from Direct Assay | sequence | 3
Inferred from Mutant Phenotype | sequence | 7
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 3
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
(110 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Direct Assay | misc | 1
Inferred from Key Residues | molecular_function | 1
Non-traceable Author Statement | complementation | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Traceable Author Statement | sequence | 2
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Physical Interaction | misc | 2
Inferred from Direct Assay | sequence | 3
Inferred from Direct Assay | subunit_composition | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
Inferred from Mutant Phenotype | sequence | 7
Other direct assay | fission_yeast_phenotype | 9
fusion protein localization evidence | gene_ex | 10
transcript expression level evidence | gene_ex | 13
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput direct assay | biological_process | 17
Immunolocalization experiment data | fission_yeast_phenotype | 18
Particle size and count assay | fission_yeast_phenotype | 19
Western blot evidence | gene_ex | 19
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
RNA protection assay evidence | gene_ex | 25
Inferred from Expression Pattern | biological_process | 27
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
ribosome profiling evidence | gene_ex | 32
Northern assay evidence | gene_ex | 37
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Mutant Phenotype | cellular_component | 45
Inferred from Genetic Interaction | cellular_component | 49
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
Chromatography evidence | fission_yeast_phenotype | 55
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
Inferred from Biological aspect of Ancestor | biological_process | 84
quantitative PCR | gene_ex | 85
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence or Structural Similarity | warning | 102
Traceable Author Statement | cellular_component | 109
Inferred from Physical Interaction | biological_process | 110
Northern assay evidence | fission_yeast_phenotype | 118
Inferred by Curator | molecular_function | 120
Inferred from Genetic Interaction | molecular_function | 134
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 144
reporter gene assay evidence | gene_ex | 144
Traceable Author Statement | molecular_function | 145
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
Non-traceable Author Statement | molecular_function | 153
Inferred from Experiment | cellular_component | 161
Traceable Author Statement | biological_process | 163
Non-traceable Author Statement | cellular_component | 187
Inferred from Experiment | biological_process | 197
Inferred from Sequence Model | biological_process | 197
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Physical Interaction | cellular_component | 242
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Experiment | molecular_function | 367
Non-traceable Author Statement | biological_process | 401
Inferred from Sequence or Structural Similarity | cellular_component | 414
western blot evidence used in manual assertion | gene_ex | 437
Inferred from Sequence or Structural Similarity | molecular_function | 469
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred by Curator | cellular_component | 529
Inferred from Electronic Annotation | biological_process | 533
quantitative PCR | fission_yeast_phenotype | 540
Inferred from Sequence or Structural Similarity | biological_process | 589
Inferred from Mutant Phenotype | molecular_function | 636
Inferred from Genetic Interaction | biological_process | 654
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Inferred from Direct Assay | biological_process | 695
Co-immunoprecipitation experiment | fission_yeast_phenotype | 746
northern assay evidence used in manual assertion | gene_ex | 791
competitive growth assay evidence | fission_yeast_phenotype | 880
Substance quantification | fission_yeast_phenotype | 938
Inferred from Electronic Annotation | cellular_component | 996
Flow cytometry data | fission_yeast_phenotype | 1038
Inferred by Curator | biological_process | 1137
mass spectrometry evidence | PSI-MOD | 1173
Inferred from Sequence Model | molecular_function | 1260
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1297
Inferred from Sequence Orthology | molecular_function | 1407
Other | fission_yeast_phenotype | 1494
Inferred from Sequence Orthology | cellular_component | 1509
Inferred from high throughput mutant phenotype | molecular_function | 1535
Enzyme assay data | fission_yeast_phenotype | 1691
Inferred from Direct Assay | molecular_function | 1782
Inferred from Electronic Annotation | molecular_function | 1840
expression microarray evidence | gene_ex | 2017
reporter gene assay evidence | fission_yeast_phenotype | 2067
gel electrophoresis evidence | fission_yeast_phenotype | 2088
Inferred from Sequence Orthology | biological_process | 2288
Inferred from Physical Interaction | molecular_function | 2354
transcript expression level evidence | fission_yeast_phenotype | 3082
Western blot assay | fission_yeast_phenotype | 3295
Inferred from Mutant Phenotype | biological_process | 4011
Inferred from Direct Assay | cellular_component | 4901
Inferred from high throughput direct assay | cellular_component | 6882
experimental evidence | PSI-MOD | 8141
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
mass spectrometry evidence | gene_ex | 13688
Inferred from Direct Assay | PSI-MOD | 16402
experimental evidence | gene_ex | 20340
cell growth assay evidence | fission_yeast_phenotype | 27739
Microscopy | fission_yeast_phenotype | 33121
(110 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
cell growth assay evidence | fission_yeast_phenotype | 27739
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1297
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 746
competitive growth assay evidence | fission_yeast_phenotype | 880
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 144
Enzyme assay data | fission_yeast_phenotype | 1691
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
experimental evidence | gene_ex | 20340
experimental evidence | PSI-MOD | 8141
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 2017
Flow cytometry data | fission_yeast_phenotype | 1038
fusion protein localization evidence | gene_ex | 10
gel electrophoresis evidence | fission_yeast_phenotype | 2088
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred by Curator | biological_process | 1137
Inferred by Curator | cellular_component | 529
Inferred by Curator | molecular_function | 120
Inferred from Biological aspect of Ancestor | biological_process | 84
Inferred from Direct Assay | biological_process | 695
Inferred from Direct Assay | cellular_component | 4901
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1782
Inferred from Direct Assay | PSI-MOD | 16402
Inferred from Direct Assay | sequence | 3
Inferred from Direct Assay | subunit_composition | 3
Inferred from Electronic Annotation | biological_process | 533
Inferred from Electronic Annotation | cellular_component | 996
Inferred from Electronic Annotation | molecular_function | 1840
Inferred from Experiment | biological_process | 197
Inferred from Experiment | cellular_component | 161
Inferred from Experiment | molecular_function | 367
Inferred from Expression Pattern | biological_process | 27
Inferred from Genetic Interaction | biological_process | 654
Inferred from Genetic Interaction | cellular_component | 49
Inferred from Genetic Interaction | molecular_function | 134
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6882
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | biological_process | 4011
Inferred from Mutant Phenotype | cellular_component | 45
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 636
Inferred from Mutant Phenotype | sequence | 7
Inferred from Physical Interaction | biological_process | 110
Inferred from Physical Interaction | cellular_component | 242
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2354
Inferred from Sequence Model | biological_process | 197
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence Model | molecular_function | 1260
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | biological_process | 589
Inferred from Sequence or Structural Similarity | cellular_component | 414
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 469
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
Inferred from Sequence Orthology | biological_process | 2288
Inferred from Sequence Orthology | cellular_component | 1509
Inferred from Sequence Orthology | molecular_function | 1407
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
mass spectrometry evidence | PSI-MOD | 1173
Microscopy | fission_yeast_phenotype | 33121
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Non-traceable Author Statement | biological_process | 401
Non-traceable Author Statement | cellular_component | 187
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 153
Northern assay evidence | fission_yeast_phenotype | 118
Northern assay evidence | gene_ex | 37
northern assay evidence used in manual assertion | gene_ex | 791
Other | fission_yeast_phenotype | 1494
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 19
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 540
quantitative PCR | gene_ex | 85
reporter gene assay evidence | fission_yeast_phenotype | 2067
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 25
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Substance quantification | fission_yeast_phenotype | 938
Traceable Author Statement | biological_process | 163
Traceable Author Statement | cellular_component | 109
Traceable Author Statement | molecular_function | 145
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | sequence | 2
transcript expression level evidence | fission_yeast_phenotype | 3082
transcript expression level evidence | gene_ex | 13
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Western blot assay | fission_yeast_phenotype | 3295
Western blot evidence | gene_ex | 19
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
western blot evidence used in manual assertion | gene_ex | 437
(110 rows)
total:
count
--------
291322
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
1197 | PSI-MOD
2146 | molecular_function
2516 | cellular_component
3215 | biological_process
24932 | PomBase annotation extension terms
30594 | fission_yeast_phenotype
(6 rows)
total
-------
64600
(1 row)