counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 21 | ex_tools 29 | cat_act 30 | pathway 90 | m_f_g 184 | subunit_composition 237 | genome_org 398 | misc 424 | complementation 834 | EC numbers 954 | sequence 957 | name_description 1732 | warning 1861 | PomBase family or domain 2415 | disease_ontology 5138 | PomBase gene characterisation status 11144 | biological_process 12229 | molecular_function 16198 | cellular_component 25069 | species_dist 35816 | PSI-MOD 37744 | gene_ex 56541 | PomBase gene products 82710 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 1136 Inferred from Biological aspect of Ancestor | biological_process | 92 Inferred from Direct Assay | biological_process | 701 Inferred from Electronic Annotation | biological_process | 524 Inferred from Experiment | biological_process | 201 Inferred from Expression Pattern | biological_process | 27 Inferred from Genetic Interaction | biological_process | 658 Inferred from high throughput direct assay | biological_process | 17 Inferred from Mutant Phenotype | biological_process | 4042 Inferred from Physical Interaction | biological_process | 110 Inferred from Sequence Model | biological_process | 199 Inferred from Sequence or Structural Similarity | biological_process | 586 Inferred from Sequence Orthology | biological_process | 2289 Non-traceable Author Statement | biological_process | 398 Traceable Author Statement | biological_process | 164 Inferred by Curator | cellular_component | 529 Inferred from Direct Assay | cellular_component | 4930 Inferred from Electronic Annotation | cellular_component | 996 Inferred from Experiment | cellular_component | 166 Inferred from Genetic Interaction | cellular_component | 49 Inferred from high throughput direct assay | cellular_component | 6882 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Physical Interaction | cellular_component | 282 Inferred from Sequence Alignment | cellular_component | 1 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence or Structural Similarity | cellular_component | 411 Inferred from Sequence Orthology | cellular_component | 1511 Non-traceable Author Statement | cellular_component | 187 Traceable Author Statement | cellular_component | 108 Non-traceable Author Statement | complementation | 1 PMID:26610878 | disease_ontology | 1 cell growth assay evidence | fission_yeast_phenotype | 27851 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1335 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 757 competitive growth assay evidence | fission_yeast_phenotype | 880 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145 Enzyme assay data | fission_yeast_phenotype | 1698 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 experimental phenotypic evidence | fission_yeast_phenotype | 493 Flow cytometry data | fission_yeast_phenotype | 1058 gel electrophoresis evidence | fission_yeast_phenotype | 2112 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 33350 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1505 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 22 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 565 reporter gene assay evidence | fission_yeast_phenotype | 2116 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Substance quantification evidence | fission_yeast_phenotype | 940 transcript expression level evidence | fission_yeast_phenotype | 3151 Western blot assay | fission_yeast_phenotype | 3385 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 experimental evidence | gene_ex | 20340 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 Northern assay evidence | gene_ex | 48 northern assay evidence used in manual assertion | gene_ex | 791 quantitative PCR | gene_ex | 85 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 13 Western blot evidence | gene_ex | 19 western blot evidence used in manual assertion | gene_ex | 437 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 120 Inferred from Direct Assay | molecular_function | 1792 Inferred from Electronic Annotation | molecular_function | 1832 Inferred from Experiment | molecular_function | 369 Inferred from Genetic Interaction | molecular_function | 132 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 641 Inferred from Physical Interaction | molecular_function | 2358 Inferred from Sequence Model | molecular_function | 1260 Inferred from Sequence or Structural Similarity | molecular_function | 465 Inferred from Sequence Orthology | molecular_function | 1409 Non-traceable Author Statement | molecular_function | 152 Traceable Author Statement | molecular_function | 146 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | PSI-MOD | 16420 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 mass spectrometry evidence | PSI-MOD | 1666 Traceable Author Statement | PSI-MOD | 1 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 3 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (112 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence Alignment | cellular_component | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 PMID:26610878 | disease_ontology | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 transcript expression level evidence | gene_ex | 13 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | molecular_function | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 Western blot evidence | gene_ex | 19 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Particle size and count assay | fission_yeast_phenotype | 22 RNA protection assay evidence | gene_ex | 25 Inferred from Expression Pattern | biological_process | 27 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 ribosome profiling evidence | gene_ex | 32 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Mutant Phenotype | cellular_component | 45 Northern assay evidence | gene_ex | 48 Inferred from Genetic Interaction | cellular_component | 49 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 Chromatography evidence | fission_yeast_phenotype | 55 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | gene_ex | 85 Inferred from Biological aspect of Ancestor | biological_process | 92 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 102 Traceable Author Statement | cellular_component | 108 Inferred from Physical Interaction | biological_process | 110 Northern assay evidence | fission_yeast_phenotype | 118 Inferred by Curator | molecular_function | 120 Inferred from Genetic Interaction | molecular_function | 132 reporter gene assay evidence | gene_ex | 144 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145 Traceable Author Statement | molecular_function | 146 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Non-traceable Author Statement | molecular_function | 152 Traceable Author Statement | biological_process | 164 Inferred from Experiment | cellular_component | 166 Non-traceable Author Statement | cellular_component | 187 Inferred from Sequence Model | biological_process | 199 Inferred from Experiment | biological_process | 201 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Physical Interaction | cellular_component | 282 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Experiment | molecular_function | 369 Non-traceable Author Statement | biological_process | 398 Inferred from Sequence or Structural Similarity | cellular_component | 411 western blot evidence used in manual assertion | gene_ex | 437 Inferred from Sequence or Structural Similarity | molecular_function | 465 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Electronic Annotation | biological_process | 524 Inferred by Curator | cellular_component | 529 quantitative PCR | fission_yeast_phenotype | 565 Inferred from Sequence or Structural Similarity | biological_process | 586 Inferred from Mutant Phenotype | molecular_function | 641 Inferred from Genetic Interaction | biological_process | 658 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Inferred from Direct Assay | biological_process | 701 Co-immunoprecipitation experiment | fission_yeast_phenotype | 757 northern assay evidence used in manual assertion | gene_ex | 791 competitive growth assay evidence | fission_yeast_phenotype | 880 Substance quantification evidence | fission_yeast_phenotype | 940 Inferred from Electronic Annotation | cellular_component | 996 Flow cytometry data | fission_yeast_phenotype | 1058 Inferred by Curator | biological_process | 1136 Inferred from Sequence Model | molecular_function | 1260 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1335 Inferred from Sequence Orthology | molecular_function | 1409 Other | fission_yeast_phenotype | 1505 Inferred from Sequence Orthology | cellular_component | 1511 Inferred from high throughput mutant phenotype | molecular_function | 1535 mass spectrometry evidence | PSI-MOD | 1666 Enzyme assay data | fission_yeast_phenotype | 1698 Inferred from Direct Assay | molecular_function | 1792 Inferred from Electronic Annotation | molecular_function | 1832 expression microarray evidence | gene_ex | 2017 gel electrophoresis evidence | fission_yeast_phenotype | 2112 reporter gene assay evidence | fission_yeast_phenotype | 2116 Inferred from Sequence Orthology | biological_process | 2289 Inferred from Physical Interaction | molecular_function | 2358 transcript expression level evidence | fission_yeast_phenotype | 3151 Western blot assay | fission_yeast_phenotype | 3385 Inferred from Mutant Phenotype | biological_process | 4042 Inferred from Direct Assay | cellular_component | 4930 Inferred from high throughput direct assay | cellular_component | 6882 experimental evidence | PSI-MOD | 8141 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16420 experimental evidence | gene_ex | 20340 cell growth assay evidence | fission_yeast_phenotype | 27851 Microscopy | fission_yeast_phenotype | 33350 (112 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- cell growth assay evidence | fission_yeast_phenotype | 27851 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1335 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 757 competitive growth assay evidence | fission_yeast_phenotype | 880 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145 Enzyme assay data | fission_yeast_phenotype | 1698 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 experimental evidence | gene_ex | 20340 experimental evidence | PSI-MOD | 8141 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2017 Flow cytometry data | fission_yeast_phenotype | 1058 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 2112 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1136 Inferred by Curator | cellular_component | 529 Inferred by Curator | molecular_function | 120 Inferred from Biological aspect of Ancestor | biological_process | 92 Inferred from Direct Assay | biological_process | 701 Inferred from Direct Assay | cellular_component | 4930 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1792 Inferred from Direct Assay | PSI-MOD | 16420 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 3 Inferred from Electronic Annotation | biological_process | 524 Inferred from Electronic Annotation | cellular_component | 996 Inferred from Electronic Annotation | molecular_function | 1832 Inferred from Experiment | biological_process | 201 Inferred from Experiment | cellular_component | 166 Inferred from Experiment | molecular_function | 369 Inferred from Expression Pattern | biological_process | 27 Inferred from Genetic Interaction | biological_process | 658 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Genetic Interaction | molecular_function | 132 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6882 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 4042 Inferred from Mutant Phenotype | cellular_component | 45 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 641 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 110 Inferred from Physical Interaction | cellular_component | 282 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2358 Inferred from Sequence Alignment | cellular_component | 1 Inferred from Sequence Model | biological_process | 199 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence Model | molecular_function | 1260 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | biological_process | 586 Inferred from Sequence or Structural Similarity | cellular_component | 411 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 465 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence Orthology | biological_process | 2289 Inferred from Sequence Orthology | cellular_component | 1511 Inferred from Sequence Orthology | molecular_function | 1409 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 mass spectrometry evidence | PSI-MOD | 1666 Microscopy | fission_yeast_phenotype | 33350 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Non-traceable Author Statement | biological_process | 398 Non-traceable Author Statement | cellular_component | 187 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 152 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 48 northern assay evidence used in manual assertion | gene_ex | 791 Other | fission_yeast_phenotype | 1505 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 22 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 PMID:26610878 | disease_ontology | 1 quantitative PCR | fission_yeast_phenotype | 565 quantitative PCR | gene_ex | 85 reporter gene assay evidence | fission_yeast_phenotype | 2116 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 25 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification evidence | fission_yeast_phenotype | 940 Traceable Author Statement | biological_process | 164 Traceable Author Statement | cellular_component | 108 Traceable Author Statement | molecular_function | 146 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 transcript expression level evidence | fission_yeast_phenotype | 3151 transcript expression level evidence | gene_ex | 13 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Western blot assay | fission_yeast_phenotype | 3385 Western blot evidence | gene_ex | 19 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 437 (112 rows) total: count -------- 292761 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1198 | PSI-MOD 2149 | molecular_function 2532 | cellular_component 3253 | biological_process 25421 | PomBase annotation extension terms 30896 | fission_yeast_phenotype (6 rows) total ------- 65449 (1 row)