Running check: PomBase::Check::DuplicateInteractions Running check: PomBase::Check::FeatureCount pombe_genes - SUCCESS enough_isa_cvterm_rels - SUCCESS no_duplicate_pombe_gene_names - CHECK FAILURE: expected 0 but got 1 2 mat3-Mi all alleles should be instance_of gene - SUCCESS no population term should have a has_penetrance relation - SUCCESS check for annotations from Canto - SUCCESS check that we have enough annotations - SUCCESS check that GO filtering hasn't failed - SUCCESS check that all quantitative annotation have a count qualifier - SUCCESS check that protein binding annotations have two assayed_using extensions - SUCCESS don't store the same ortholog twice - SUCCESS enough_genetic_interactions - SUCCESS enough_physical_interactions - SUCCESS Check for non-ascii characters in feature names - SUCCESS Check that gene identifiers used in extensions exist - SUCCESS annotation_with_no_evidence - SUCCESS All duplicate GO annotation. Columns are: count, systematic ID, gene name, term name, evidence, PubMed ID, 'with', session ID - CHECK FAILURE: expected 0 but got 70 2 SPAC13C5.07.1 mre11 protein binding Inferred from Physical Interaction PMID:12944481 PomBase:SPBC6B1.09c 35666363d66653ce 2 SPAC13D6.01.1 pof14 protein binding Inferred from Physical Interaction PMID:17016471 PomBase:SPBC409.05 2 SPAC13D6.01.1 pof14 protein binding Inferred from Physical Interaction PMID:17016471 PomBase:SPBC646.05c 2 SPAC13D6.01.1 pof14 SCF ubiquitin ligase complex Inferred from Direct Assay PMID:17016471 [null] 2 SPAC16A10.07c.1 taz1 protein binding Inferred from Physical Interaction PMID:11270572 PomBase:SPAC7D4.04 4a6747e22f344bb1 2 SPAC17G6.17.1 pof8 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC409.05 2 SPAC18G6.15.1 mal3 protein binding Inferred from Physical Interaction PMID:15665379 PomBase:SPBC1604.20c 564d70e29944c82f 2 SPAC25G10.08.1 [null] cytoplasm Inferred from Direct Assay PMID:15904532 [null] 2 SPAC29E6.01.1 pof11 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC409.05 2 SPAC2C4.07c.1 dis32 3'-5'-exoribonuclease activity Inferred from Direct Assay PMID:23503588 [null] 99c47a6d111cc12a 2 SPAC2C4.07c.1 dis32 P-body Inferred from Direct Assay PMID:23503588 [null] 99c47a6d111cc12a 2 SPAC2C4.07c.1 dis32 polyuridylation-dependent mRNA catabolic process Inferred from Mutant Phenotype PMID:23503588 [null] 99c47a6d111cc12a 2 SPAC31G5.13.1 rpn11 nucleus [exists_during] dynein-driven meiotic oscillatory nuclear movement Inferred from Direct Assay PMID:9822592 [null] 7399dd02f679f385 2 SPAC3H1.01c.1 orc3 DNA replication origin binding Inferred from Direct Assay PMID:11850415 [null] 5a267592b8c97764 2 SPAC3H1.01c.1 orc3 nuclear origin of replication recognition complex Inferred from Direct Assay PMID:10535928 [null] 051d2527dd3dd99c 2 SPAC4D7.03.1 pop2 negative regulation of mitotic DNA replication initiation Inferred from Mutant Phenotype PMID:9653157 [null] 0c180e0969ef689c 2 SPAC6F6.02c.1 pof5 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC409.05 2 SPAC7D4.04.1 atg11 protein binding Inferred from Physical Interaction PMID:11270572 PomBase:SPAC16A10.07c 4a6747e22f344bb1 2 SPAC8E11.03c.1 dmc1 double-stranded DNA binding Inferred from Direct Assay PMID:15899844 [null] 2 SPAC8E11.03c.1 dmc1 recombinase activity Inferred from Direct Assay PMID:15899844 [null] 2 SPAC8E11.03c.1 dmc1 single-stranded DNA binding Inferred from Direct Assay PMID:15899844 [null] 2 SPAPB2B4.03.1 cig2 protein binding Inferred from Physical Interaction PMID:8455610 PomBase:SPBC11B10.09 c54c942aa08acf9b 2 SPBC1271.01c.1 pof13 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC409.05 2 SPBC146.06c.1 fan1 interstrand cross-link repair Inferred from Mutant Phenotype PMID:24192486 [null] 006084139334e409 2 SPBC14C8.14c.1 pol5 protein binding Inferred from Physical Interaction PMID:16816948 PomBase:SPBC336.12c 2 SPBC14C8.14c.1 pol5 rDNA binding Inferred from Direct Assay PMID:16816948 [null] 2 SPBC1604.20c.1 tea2 microtubule binding Inferred from Direct Assay PMID:15665379 [null] 564d70e29944c82f 2 SPBC1604.20c.1 tea2 protein binding Inferred from Physical Interaction PMID:15665379 PomBase:SPAC18G6.15 564d70e29944c82f 2 SPBC16D10.07c.1 sir2 nucleus Inferred from Direct Assay PMID:15545655 [null] 2 SPBC1706.01.1 tea4 protein binding Inferred from Physical Interaction PMID:15809031 PomBase:SPCC895.05 2 SPBC1921.07c.1 sgf29 SAGA complex Inferred from Direct Assay PMID:26401015 [null] 49fe99dfe092c9fa 2 SPBC216.06c.1 swi1 nucleus Inferred from Direct Assay PMID:14560029 [null] 2 SPBC25B2.11.1 pof2 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC409.05 2 SPBC29A10.15.1 orc1 DNA replication origin binding Inferred from Direct Assay PMID:11850415 [null] 5a267592b8c97764 2 SPBC2A9.12.1 orc6 DNA replication origin binding Inferred from Direct Assay PMID:11850415 [null] 5a267592b8c97764 2 SPBC2A9.12.1 orc6 nuclear origin of replication recognition complex Inferred from Direct Assay PMID:10535928 [null] 051d2527dd3dd99c 2 SPBC30D10.04.1 swi3 nucleus Inferred from Direct Assay PMID:15367656 [null] ef57da759b1d97c2 2 SPBC336.01.1 fbh1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC409.05 2 SPBC336.12c.1 cdc10 protein binding Inferred from Physical Interaction PMID:16816948 PomBase:SPBC14C8.14c 2 SPBC3H7.06c.1 pof9 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC409.05 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPAC17G6.17 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPAC29E6.01 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPAC57A10.05c 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPAC6F6.02c 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC1271.01c 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC1703.06 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC25B2.11 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC29A3.08 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC336.01 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC3H7.06c 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC56F2.01 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPCC18.04 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPCC338.16 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15555586 PomBase:SPBC776.18c 2 SPBC409.05.1 skp1 protein binding Inferred from Physical Interaction PMID:15555586 PomBase:SPBP16F5.02 2 SPBC646.05c.1 erg9 protein binding Inferred from Physical Interaction PMID:17016471 PomBase:SPAC13D6.01 2 SPBC646.14c.1 orc5 DNA replication origin binding Inferred from Direct Assay PMID:11850415 [null] 5a267592b8c97764 2 SPBC646.14c.1 orc5 nuclear origin of replication recognition complex Inferred from Direct Assay PMID:10535928 [null] 051d2527dd3dd99c 2 SPBC685.09.1 orc2 DNA replication origin binding Inferred from Direct Assay PMID:11850415 [null] 5a267592b8c97764 2 SPBC685.09.1 orc2 nuclear origin of replication recognition complex Inferred from Direct Assay PMID:10535928 [null] 051d2527dd3dd99c 2 SPBC6B1.09c.1 nbs1 protein binding Inferred from Physical Interaction PMID:12944481 PomBase:SPAC13C5.07 35666363d66653ce 2 SPBC6B1.09c.1 nbs1 protein binding Inferred from Physical Interaction PMID:12944482 PomBase:SPAC13C5.07 5a399588f4944392 2 SPBC725.02.1 mpr1 phosphorelay signal transduction system Inferred from Direct Assay PMID:17559414 [null] e6d7e22d7df32487 2 SPBC776.12c.1 hsk1 nucleus Inferred from Direct Assay PMID:11027263 [null] 02e5918aa9716b93 2 SPBC776.12c.1 hsk1 protein serine/threonine kinase activity [has_substrate] SPBC4.04c Inferred from Direct Assay PMID:9705352 [null] f176723226a4e520 2 SPBC776.18c.1 pmh1 protein binding Inferred from Physical Interaction PMID:15555586 PomBase:SPBC409.05 2 SPBP16F5.02.1 mcs2 protein binding Inferred from Physical Interaction PMID:15555586 PomBase:SPBC409.05 2 SPBP23A10.13.1 orc4 nuclear origin of replication recognition complex Inferred from Direct Assay PMID:10535928 [null] 051d2527dd3dd99c 2 SPCC338.16.1 pof3 protein binding Inferred from Physical Interaction PMID:15147268 PomBase:SPBC409.05 2 SPCC895.05.1 for3 protein binding Inferred from Physical Interaction PMID:15809031 PomBase:SPBC1706.01 'with' values that have an unsupported DB prefix - CHECK FAILURE: expected 0 but got 161 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] PMID:22370726 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] PMID:15075260 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] GO_REF:0000024 MGI:MGI [null] GO_REF:0000024 EcoGene [null] GO_REF:0000024 MGI:MGI [null] GO_REF:0000024 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 TAIR:locus [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 EcoGene [null] PMID:21873635 MGI:MGI [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 TAIR:locus [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 MGI:MGI [null] PMID:21873635 EcoGene [null] PMID:21873635 EcoGene [null] PMID:21873635 EcoGene [null] PMID:21873635 EcoGene [null] PMID:21873635 ZFIN [null] PMID:21873635 ZFIN [null] PMID:21873635 ZFIN [null] PMID:21873635 ZFIN [null] PMID:21873635 ZFIN [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 EcoGene [null] PMID:21873635 MGI:MGI [null] PMID:21873635 TAIR:locus [null] PMID:21873635 EcoGene [null] PMID:21873635 MGI:MGI [null] PMID:21873635 TAIR:locus [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 EcoGene [null] PMID:21873635 EcoGene [null] PMID:21873635 EcoGene [null] PMID:21873635 EcoGene [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 EcoGene [null] PMID:21873635 EcoGene [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 EcoGene [null] PMID:21873635 EcoGene [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 MGI:MGI [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 TAIR:locus [null] PMID:21873635 EcoGene [null] PMID:21873635 EcoGene [null] PMID:21873635 EcoGene [null] PMID:21873635 EcoGene [null] PMID:21873635 TAIR:locus [null] PMID:21873635 relation ranges / annotation properties where the term is missing from the database, eg. from(...) or column_17(...) - SUCCESS