counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
21 | ex_tools
29 | cat_act
30 | pathway
90 | m_f_g
185 | subunit_composition
237 | genome_org
401 | misc
431 | complementation
834 | EC numbers
954 | sequence
957 | name_description
1730 | warning
1862 | PomBase family or domain
2426 | disease_ontology
5136 | PomBase gene characterisation status
11133 | biological_process
12214 | molecular_function
16216 | cellular_component
25060 | species_dist
35820 | PSI-MOD
37783 | gene_ex
56662 | PomBase gene products
83514 | fission_yeast_phenotype
(24 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred by Curator | biological_process | 1123
Inferred from Biological aspect of Ancestor | biological_process | 84
Inferred from Direct Assay | biological_process | 701
Inferred from Electronic Annotation | biological_process | 528
Inferred from Experiment | biological_process | 211
Inferred from Expression Pattern | biological_process | 27
Inferred from Genetic Interaction | biological_process | 661
Inferred from high throughput direct assay | biological_process | 17
Inferred from Mutant Phenotype | biological_process | 4034
Inferred from Physical Interaction | biological_process | 110
Inferred from Sequence Model | biological_process | 198
Inferred from Sequence or Structural Similarity | biological_process | 585
Inferred from Sequence Orthology | biological_process | 2286
Non-traceable Author Statement | biological_process | 409
Traceable Author Statement | biological_process | 159
Inferred by Curator | cellular_component | 529
Inferred from Direct Assay | cellular_component | 4931
Inferred from Electronic Annotation | cellular_component | 1002
Inferred from Experiment | cellular_component | 178
Inferred from Genetic Interaction | cellular_component | 49
Inferred from high throughput direct assay | cellular_component | 6882
Inferred from Mutant Phenotype | cellular_component | 49
Inferred from Physical Interaction | cellular_component | 280
Inferred from Sequence Alignment | cellular_component | 1
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence or Structural Similarity | cellular_component | 408
Inferred from Sequence Orthology | cellular_component | 1512
Non-traceable Author Statement | cellular_component | 186
Traceable Author Statement | cellular_component | 108
Non-traceable Author Statement | complementation | 1
PMID:11463848 | disease_ontology | 1
PMID:21653323 | disease_ontology | 1
PMID:24782769 | disease_ontology | 7
PMID:26610878 | disease_ontology | 1
PMID:30190335 | disease_ontology | 1
PMID:9542324 | disease_ontology | 1
cell growth assay evidence | fission_yeast_phenotype | 28258
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1342
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 759
competitive growth assay evidence | fission_yeast_phenotype | 878
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145
Enzyme assay data | fission_yeast_phenotype | 1704
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
experimental phenotypic evidence | fission_yeast_phenotype | 493
Flow cytometry data | fission_yeast_phenotype | 1070
gel electrophoresis evidence | fission_yeast_phenotype | 2145
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Immunolocalization experiment data | fission_yeast_phenotype | 18
Microscopy | fission_yeast_phenotype | 33530
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1511
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 22
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 565
reporter gene assay evidence | fission_yeast_phenotype | 2149
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Substance quantification evidence | fission_yeast_phenotype | 943
transcript expression level evidence | fission_yeast_phenotype | 3195
Western blot assay | fission_yeast_phenotype | 3458
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
experimental evidence | gene_ex | 20336
expression microarray evidence | gene_ex | 2017
fusion protein localization evidence | gene_ex | 10
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
Northern assay evidence | gene_ex | 48
northern assay evidence used in manual assertion | gene_ex | 791
quantitative PCR | gene_ex | 85
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 59
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | gene_ex | 15
Western blot evidence | gene_ex | 20
western blot evidence used in manual assertion | gene_ex | 437
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 108
Inferred from Direct Assay | molecular_function | 1809
Inferred from Electronic Annotation | molecular_function | 1884
Inferred from Experiment | molecular_function | 378
Inferred from Genetic Interaction | molecular_function | 130
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 645
Inferred from Physical Interaction | molecular_function | 2346
Inferred from Sequence Model | molecular_function | 1245
Inferred from Sequence or Structural Similarity | molecular_function | 455
Inferred from Sequence Orthology | molecular_function | 1369
Non-traceable Author Statement | molecular_function | 155
Traceable Author Statement | molecular_function | 137
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
experimental evidence | PSI-MOD | 8141
Inferred from Direct Assay | PSI-MOD | 16424
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
mass spectrometry evidence | PSI-MOD | 1666
Traceable Author Statement | PSI-MOD | 1
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Inferred from Direct Assay | sequence | 3
Inferred from Mutant Phenotype | sequence | 7
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 3
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
(117 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred from Sequence Alignment | cellular_component | 1
Non-traceable Author Statement | complementation | 1
PMID:21653323 | disease_ontology | 1
PMID:9542324 | disease_ontology | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | misc | 1
PMID:11463848 | disease_ontology | 1
PMID:26610878 | disease_ontology | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Key Residues | molecular_function | 1
PMID:30190335 | disease_ontology | 1
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Inferred from Sequence Model | PSI-MOD | 2
Traceable Author Statement | sequence | 2
Inferred from Physical Interaction | misc | 2
Inferred from Direct Assay | subunit_composition | 3
Inferred from Direct Assay | sequence | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
Inferred from Mutant Phenotype | sequence | 7
PMID:24782769 | disease_ontology | 7
Other direct assay | fission_yeast_phenotype | 9
fusion protein localization evidence | gene_ex | 10
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | gene_ex | 15
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | molecular_function | 17
Immunolocalization experiment data | fission_yeast_phenotype | 18
Western blot evidence | gene_ex | 20
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Particle size and count assay | fission_yeast_phenotype | 22
Inferred from Expression Pattern | biological_process | 27
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
ribosome profiling evidence | gene_ex | 32
Inferred from Sequence or Structural Similarity | m_f_g | 42
Northern assay evidence | gene_ex | 48
Inferred from Genetic Interaction | cellular_component | 49
Inferred from Mutant Phenotype | cellular_component | 49
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
Chromatography evidence | fission_yeast_phenotype | 55
RNA protection assay evidence | gene_ex | 59
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
Inferred from Biological aspect of Ancestor | biological_process | 84
quantitative PCR | gene_ex | 85
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence or Structural Similarity | warning | 102
Inferred by Curator | molecular_function | 108
Traceable Author Statement | cellular_component | 108
Inferred from Physical Interaction | biological_process | 110
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 130
Traceable Author Statement | molecular_function | 137
reporter gene assay evidence | gene_ex | 144
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
Non-traceable Author Statement | molecular_function | 155
Traceable Author Statement | biological_process | 159
Inferred from Experiment | cellular_component | 178
Non-traceable Author Statement | cellular_component | 186
Inferred from Sequence Model | biological_process | 198
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Experiment | biological_process | 211
Inferred from Physical Interaction | cellular_component | 280
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Experiment | molecular_function | 378
Inferred from Sequence or Structural Similarity | cellular_component | 408
Non-traceable Author Statement | biological_process | 409
western blot evidence used in manual assertion | gene_ex | 437
Inferred from Sequence or Structural Similarity | molecular_function | 455
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Electronic Annotation | biological_process | 528
Inferred by Curator | cellular_component | 529
quantitative PCR | fission_yeast_phenotype | 565
Inferred from Sequence or Structural Similarity | biological_process | 585
Inferred from Mutant Phenotype | molecular_function | 645
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Inferred from Genetic Interaction | biological_process | 661
Inferred from Direct Assay | biological_process | 701
Co-immunoprecipitation experiment | fission_yeast_phenotype | 759
northern assay evidence used in manual assertion | gene_ex | 791
competitive growth assay evidence | fission_yeast_phenotype | 878
Substance quantification evidence | fission_yeast_phenotype | 943
Inferred from Electronic Annotation | cellular_component | 1002
Flow cytometry data | fission_yeast_phenotype | 1070
Inferred by Curator | biological_process | 1123
Inferred from Sequence Model | molecular_function | 1245
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1342
Inferred from Sequence Orthology | molecular_function | 1369
Other | fission_yeast_phenotype | 1511
Inferred from Sequence Orthology | cellular_component | 1512
Inferred from high throughput mutant phenotype | molecular_function | 1535
mass spectrometry evidence | PSI-MOD | 1666
Enzyme assay data | fission_yeast_phenotype | 1704
Inferred from Direct Assay | molecular_function | 1809
Inferred from Electronic Annotation | molecular_function | 1884
expression microarray evidence | gene_ex | 2017
gel electrophoresis evidence | fission_yeast_phenotype | 2145
reporter gene assay evidence | fission_yeast_phenotype | 2149
Inferred from Sequence Orthology | biological_process | 2286
Inferred from Physical Interaction | molecular_function | 2346
transcript expression level evidence | fission_yeast_phenotype | 3195
Western blot assay | fission_yeast_phenotype | 3458
Inferred from Mutant Phenotype | biological_process | 4034
Inferred from Direct Assay | cellular_component | 4931
Inferred from high throughput direct assay | cellular_component | 6882
experimental evidence | PSI-MOD | 8141
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
mass spectrometry evidence | gene_ex | 13688
Inferred from Direct Assay | PSI-MOD | 16424
experimental evidence | gene_ex | 20336
cell growth assay evidence | fission_yeast_phenotype | 28258
Microscopy | fission_yeast_phenotype | 33530
(117 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
cell growth assay evidence | fission_yeast_phenotype | 28258
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1342
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 759
competitive growth assay evidence | fission_yeast_phenotype | 878
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145
Enzyme assay data | fission_yeast_phenotype | 1704
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
experimental evidence | gene_ex | 20336
experimental evidence | PSI-MOD | 8141
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 2017
Flow cytometry data | fission_yeast_phenotype | 1070
fusion protein localization evidence | gene_ex | 10
gel electrophoresis evidence | fission_yeast_phenotype | 2145
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred by Curator | biological_process | 1123
Inferred by Curator | cellular_component | 529
Inferred by Curator | molecular_function | 108
Inferred from Biological aspect of Ancestor | biological_process | 84
Inferred from Direct Assay | biological_process | 701
Inferred from Direct Assay | cellular_component | 4931
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1809
Inferred from Direct Assay | PSI-MOD | 16424
Inferred from Direct Assay | sequence | 3
Inferred from Direct Assay | subunit_composition | 3
Inferred from Electronic Annotation | biological_process | 528
Inferred from Electronic Annotation | cellular_component | 1002
Inferred from Electronic Annotation | molecular_function | 1884
Inferred from Experiment | biological_process | 211
Inferred from Experiment | cellular_component | 178
Inferred from Experiment | molecular_function | 378
Inferred from Expression Pattern | biological_process | 27
Inferred from Genetic Interaction | biological_process | 661
Inferred from Genetic Interaction | cellular_component | 49
Inferred from Genetic Interaction | molecular_function | 130
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6882
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | biological_process | 4034
Inferred from Mutant Phenotype | cellular_component | 49
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 645
Inferred from Mutant Phenotype | sequence | 7
Inferred from Physical Interaction | biological_process | 110
Inferred from Physical Interaction | cellular_component | 280
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2346
Inferred from Sequence Alignment | cellular_component | 1
Inferred from Sequence Model | biological_process | 198
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence Model | molecular_function | 1245
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | biological_process | 585
Inferred from Sequence or Structural Similarity | cellular_component | 408
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 455
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
Inferred from Sequence Orthology | biological_process | 2286
Inferred from Sequence Orthology | cellular_component | 1512
Inferred from Sequence Orthology | molecular_function | 1369
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
mass spectrometry evidence | PSI-MOD | 1666
Microscopy | fission_yeast_phenotype | 33530
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Non-traceable Author Statement | biological_process | 409
Non-traceable Author Statement | cellular_component | 186
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 155
Northern assay evidence | fission_yeast_phenotype | 118
Northern assay evidence | gene_ex | 48
northern assay evidence used in manual assertion | gene_ex | 791
Other | fission_yeast_phenotype | 1511
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 22
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
PMID:11463848 | disease_ontology | 1
PMID:21653323 | disease_ontology | 1
PMID:24782769 | disease_ontology | 7
PMID:26610878 | disease_ontology | 1
PMID:30190335 | disease_ontology | 1
PMID:9542324 | disease_ontology | 1
quantitative PCR | fission_yeast_phenotype | 565
quantitative PCR | gene_ex | 85
reporter gene assay evidence | fission_yeast_phenotype | 2149
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 59
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Substance quantification evidence | fission_yeast_phenotype | 943
Traceable Author Statement | biological_process | 159
Traceable Author Statement | cellular_component | 108
Traceable Author Statement | molecular_function | 137
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | sequence | 2
transcript expression level evidence | fission_yeast_phenotype | 3195
transcript expression level evidence | gene_ex | 15
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Western blot assay | fission_yeast_phenotype | 3458
Western blot evidence | gene_ex | 20
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
western blot evidence used in manual assertion | gene_ex | 437
(117 rows)
total:
count
--------
293731
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
1198 | PSI-MOD
2171 | molecular_function
2555 | cellular_component
3293 | biological_process
25756 | PomBase annotation extension terms
31385 | fission_yeast_phenotype
(6 rows)
total
-------
66358
(1 row)