counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 21 | ex_tools 29 | cat_act 30 | pathway 90 | m_f_g 186 | subunit_composition 237 | genome_org 401 | misc 436 | complementation 833 | EC numbers 954 | sequence 958 | name_description 1730 | warning 1861 | PomBase family or domain 2429 | disease_ontology 5136 | PomBase gene characterisation status 11162 | biological_process 12284 | molecular_function 16237 | cellular_component 25060 | species_dist 35822 | PSI-MOD 37787 | gene_ex 56676 | PomBase gene products 84167 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 1134 Inferred from Biological aspect of Ancestor | biological_process | 82 Inferred from Direct Assay | biological_process | 702 Inferred from Electronic Annotation | biological_process | 531 Inferred from Experiment | biological_process | 214 Inferred from Expression Pattern | biological_process | 27 Inferred from Genetic Interaction | biological_process | 661 Inferred from high throughput direct assay | biological_process | 17 Inferred from Mutant Phenotype | biological_process | 4055 Inferred from Physical Interaction | biological_process | 110 Inferred from Sequence Model | biological_process | 199 Inferred from Sequence or Structural Similarity | biological_process | 584 Inferred from Sequence Orthology | biological_process | 2289 Non-traceable Author Statement | biological_process | 399 Traceable Author Statement | biological_process | 158 Inferred by Curator | cellular_component | 528 Inferred from Direct Assay | cellular_component | 4963 Inferred from Electronic Annotation | cellular_component | 1011 Inferred from Experiment | cellular_component | 181 Inferred from Genetic Interaction | cellular_component | 49 Inferred from high throughput direct assay | cellular_component | 6882 Inferred from Mutant Phenotype | cellular_component | 49 Inferred from Physical Interaction | cellular_component | 280 Inferred from Sequence Alignment | cellular_component | 1 Inferred from Sequence Model | cellular_component | 90 Inferred from Sequence or Structural Similarity | cellular_component | 408 Inferred from Sequence Orthology | cellular_component | 1503 Non-traceable Author Statement | cellular_component | 184 Traceable Author Statement | cellular_component | 108 Non-traceable Author Statement | complementation | 1 cell growth assay evidence | fission_yeast_phenotype | 28592 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1369 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 760 competitive growth assay evidence | fission_yeast_phenotype | 878 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145 Enzyme assay data | fission_yeast_phenotype | 1705 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 experimental phenotypic evidence | fission_yeast_phenotype | 493 Flow cytometry data | fission_yeast_phenotype | 1092 gel electrophoresis evidence | fission_yeast_phenotype | 2146 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 33733 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1525 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 23 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 570 reporter gene assay evidence | fission_yeast_phenotype | 2163 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Substance quantification | fission_yeast_phenotype | 952 Substance quantification evidence | fission_yeast_phenotype | 1 transcript expression level evidence | fission_yeast_phenotype | 3213 Western blot assay | fission_yeast_phenotype | 3460 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 experimental evidence | gene_ex | 20336 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 Northern assay evidence | gene_ex | 50 northern assay evidence used in manual assertion | gene_ex | 791 quantitative PCR | gene_ex | 85 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 59 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 15 Western blot evidence | gene_ex | 22 western blot evidence used in manual assertion | gene_ex | 437 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 110 Inferred from Direct Assay | molecular_function | 1831 Inferred from Electronic Annotation | molecular_function | 1865 Inferred from Experiment | molecular_function | 378 Inferred from Genetic Interaction | molecular_function | 131 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 648 Inferred from Physical Interaction | molecular_function | 2348 Inferred from Sequence Model | molecular_function | 1255 Inferred from Sequence or Structural Similarity | molecular_function | 466 Inferred from Sequence Orthology | molecular_function | 1406 Non-traceable Author Statement | molecular_function | 152 Traceable Author Statement | molecular_function | 141 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | PSI-MOD | 16426 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 mass spectrometry evidence | PSI-MOD | 1666 Traceable Author Statement | PSI-MOD | 1 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (112 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | misc | 1 Substance quantification evidence | fission_yeast_phenotype | 1 Inferred from Key Residues | molecular_function | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence Alignment | cellular_component | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence Model | PSI-MOD | 2 Traceable Author Statement | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | gene_ex | 15 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput direct assay | biological_process | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 Western blot evidence | gene_ex | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Particle size and count assay | fission_yeast_phenotype | 23 Inferred from Expression Pattern | biological_process | 27 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 ribosome profiling evidence | gene_ex | 32 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Mutant Phenotype | cellular_component | 49 Inferred from Genetic Interaction | cellular_component | 49 Northern assay evidence | gene_ex | 50 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 Chromatography evidence | fission_yeast_phenotype | 55 RNA protection assay evidence | gene_ex | 59 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Inferred from Biological aspect of Ancestor | biological_process | 82 quantitative PCR | gene_ex | 85 Inferred from Sequence Model | cellular_component | 90 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 102 Traceable Author Statement | cellular_component | 108 Inferred from Physical Interaction | biological_process | 110 Inferred by Curator | molecular_function | 110 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 131 Traceable Author Statement | molecular_function | 141 reporter gene assay evidence | gene_ex | 144 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Non-traceable Author Statement | molecular_function | 152 Traceable Author Statement | biological_process | 158 Inferred from Experiment | cellular_component | 181 Non-traceable Author Statement | cellular_component | 184 Inferred from Sequence Model | biological_process | 199 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | biological_process | 214 Inferred from Physical Interaction | cellular_component | 280 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Experiment | molecular_function | 378 Non-traceable Author Statement | biological_process | 399 Inferred from Sequence or Structural Similarity | cellular_component | 408 western blot evidence used in manual assertion | gene_ex | 437 Inferred from Sequence or Structural Similarity | molecular_function | 466 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred by Curator | cellular_component | 528 Inferred from Electronic Annotation | biological_process | 531 quantitative PCR | fission_yeast_phenotype | 570 Inferred from Sequence or Structural Similarity | biological_process | 584 Inferred from Mutant Phenotype | molecular_function | 648 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Inferred from Genetic Interaction | biological_process | 661 Inferred from Direct Assay | biological_process | 702 Co-immunoprecipitation experiment | fission_yeast_phenotype | 760 northern assay evidence used in manual assertion | gene_ex | 791 competitive growth assay evidence | fission_yeast_phenotype | 878 Substance quantification | fission_yeast_phenotype | 952 Inferred from Electronic Annotation | cellular_component | 1011 Flow cytometry data | fission_yeast_phenotype | 1092 Inferred by Curator | biological_process | 1134 Inferred from Sequence Model | molecular_function | 1255 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1369 Inferred from Sequence Orthology | molecular_function | 1406 Inferred from Sequence Orthology | cellular_component | 1503 Other | fission_yeast_phenotype | 1525 Inferred from high throughput mutant phenotype | molecular_function | 1535 mass spectrometry evidence | PSI-MOD | 1666 Enzyme assay data | fission_yeast_phenotype | 1705 Inferred from Direct Assay | molecular_function | 1831 Inferred from Electronic Annotation | molecular_function | 1865 expression microarray evidence | gene_ex | 2017 gel electrophoresis evidence | fission_yeast_phenotype | 2146 reporter gene assay evidence | fission_yeast_phenotype | 2163 Inferred from Sequence Orthology | biological_process | 2289 Inferred from Physical Interaction | molecular_function | 2348 transcript expression level evidence | fission_yeast_phenotype | 3213 Western blot assay | fission_yeast_phenotype | 3460 Inferred from Mutant Phenotype | biological_process | 4055 Inferred from Direct Assay | cellular_component | 4963 Inferred from high throughput direct assay | cellular_component | 6882 experimental evidence | PSI-MOD | 8141 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16426 experimental evidence | gene_ex | 20336 cell growth assay evidence | fission_yeast_phenotype | 28592 Microscopy | fission_yeast_phenotype | 33733 (112 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- cell growth assay evidence | fission_yeast_phenotype | 28592 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1369 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 760 competitive growth assay evidence | fission_yeast_phenotype | 878 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145 Enzyme assay data | fission_yeast_phenotype | 1705 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 experimental evidence | gene_ex | 20336 experimental evidence | PSI-MOD | 8141 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2017 Flow cytometry data | fission_yeast_phenotype | 1092 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 2146 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1134 Inferred by Curator | cellular_component | 528 Inferred by Curator | molecular_function | 110 Inferred from Biological aspect of Ancestor | biological_process | 82 Inferred from Direct Assay | biological_process | 702 Inferred from Direct Assay | cellular_component | 4963 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1831 Inferred from Direct Assay | PSI-MOD | 16426 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 531 Inferred from Electronic Annotation | cellular_component | 1011 Inferred from Electronic Annotation | molecular_function | 1865 Inferred from Experiment | biological_process | 214 Inferred from Experiment | cellular_component | 181 Inferred from Experiment | molecular_function | 378 Inferred from Expression Pattern | biological_process | 27 Inferred from Genetic Interaction | biological_process | 661 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Genetic Interaction | molecular_function | 131 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6882 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 4055 Inferred from Mutant Phenotype | cellular_component | 49 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 648 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 110 Inferred from Physical Interaction | cellular_component | 280 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2348 Inferred from Sequence Alignment | cellular_component | 1 Inferred from Sequence Model | biological_process | 199 Inferred from Sequence Model | cellular_component | 90 Inferred from Sequence Model | molecular_function | 1255 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | biological_process | 584 Inferred from Sequence or Structural Similarity | cellular_component | 408 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 466 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence Orthology | biological_process | 2289 Inferred from Sequence Orthology | cellular_component | 1503 Inferred from Sequence Orthology | molecular_function | 1406 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 mass spectrometry evidence | PSI-MOD | 1666 Microscopy | fission_yeast_phenotype | 33733 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Non-traceable Author Statement | biological_process | 399 Non-traceable Author Statement | cellular_component | 184 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 152 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 50 northern assay evidence used in manual assertion | gene_ex | 791 Other | fission_yeast_phenotype | 1525 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 23 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 570 quantitative PCR | gene_ex | 85 reporter gene assay evidence | fission_yeast_phenotype | 2163 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 59 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 952 Substance quantification evidence | fission_yeast_phenotype | 1 Traceable Author Statement | biological_process | 158 Traceable Author Statement | cellular_component | 108 Traceable Author Statement | molecular_function | 141 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 transcript expression level evidence | fission_yeast_phenotype | 3213 transcript expression level evidence | gene_ex | 15 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Western blot assay | fission_yeast_phenotype | 3460 Western blot evidence | gene_ex | 22 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 437 (112 rows) total: count -------- 294532 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1200 | PSI-MOD 2189 | molecular_function 2581 | cellular_component 3315 | biological_process 26030 | PomBase annotation extension terms 31788 | fission_yeast_phenotype (6 rows) total ------- 67103 (1 row)