counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
21 | ex_tools
29 | cat_act
30 | pathway
90 | m_f_g
186 | subunit_composition
237 | genome_org
399 | misc
437 | complementation
833 | EC numbers
954 | sequence
960 | name_description
1730 | warning
1861 | PomBase family or domain
2410 | disease_ontology
5136 | PomBase gene characterisation status
11176 | biological_process
12291 | molecular_function
16241 | cellular_component
25060 | species_dist
35823 | PSI-MOD
37787 | gene_ex
56730 | PomBase gene products
84641 | fission_yeast_phenotype
(24 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred by Curator | biological_process | 1137
Inferred from Biological aspect of Ancestor | biological_process | 77
Inferred from Direct Assay | biological_process | 705
Inferred from Electronic Annotation | biological_process | 534
Inferred from Experiment | biological_process | 213
Inferred from Expression Pattern | biological_process | 27
Inferred from Genetic Interaction | biological_process | 661
Inferred from high throughput direct assay | biological_process | 17
Inferred from Mutant Phenotype | biological_process | 4074
Inferred from Physical Interaction | biological_process | 109
Inferred from Sequence Model | biological_process | 200
Inferred from Sequence or Structural Similarity | biological_process | 585
Inferred from Sequence Orthology | biological_process | 2280
Non-traceable Author Statement | biological_process | 399
Traceable Author Statement | biological_process | 158
Inferred by Curator | cellular_component | 528
Inferred from Direct Assay | cellular_component | 4968
Inferred from Electronic Annotation | cellular_component | 1012
Inferred from Experiment | cellular_component | 181
Inferred from Genetic Interaction | cellular_component | 49
Inferred from high throughput direct assay | cellular_component | 6882
Inferred from Mutant Phenotype | cellular_component | 50
Inferred from Physical Interaction | cellular_component | 278
Inferred from Sequence Model | cellular_component | 90
Inferred from Sequence or Structural Similarity | cellular_component | 408
Inferred from Sequence Orthology | cellular_component | 1503
Non-traceable Author Statement | cellular_component | 184
Traceable Author Statement | cellular_component | 108
Non-traceable Author Statement | complementation | 1
cell growth assay evidence | fission_yeast_phenotype | 28757
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1395
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 763
competitive growth assay evidence | fission_yeast_phenotype | 878
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145
Enzyme assay data | fission_yeast_phenotype | 1707
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
experimental phenotypic evidence | fission_yeast_phenotype | 493
Flow cytometry data | fission_yeast_phenotype | 1092
gel electrophoresis evidence | fission_yeast_phenotype | 2146
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Immunolocalization experiment data | fission_yeast_phenotype | 18
Microscopy | fission_yeast_phenotype | 33811
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1584
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 23
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 583
reporter gene assay evidence | fission_yeast_phenotype | 2177
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Substance quantification evidence | fission_yeast_phenotype | 1011
transcript expression level evidence | fission_yeast_phenotype | 3224
Western blot assay | fission_yeast_phenotype | 3505
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
experimental evidence | gene_ex | 20336
expression microarray evidence | gene_ex | 2017
fusion protein localization evidence | gene_ex | 10
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
Northern assay evidence | gene_ex | 50
northern assay evidence used in manual assertion | gene_ex | 791
quantitative PCR | gene_ex | 85
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 59
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | gene_ex | 15
Western blot evidence | gene_ex | 22
western blot evidence used in manual assertion | gene_ex | 437
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 110
Inferred from Direct Assay | molecular_function | 1836
Inferred from Electronic Annotation | molecular_function | 1864
Inferred from Experiment | molecular_function | 380
Inferred from Genetic Interaction | molecular_function | 132
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 652
Inferred from Physical Interaction | molecular_function | 2343
Inferred from Sequence Model | molecular_function | 1255
Inferred from Sequence or Structural Similarity | molecular_function | 466
Inferred from Sequence Orthology | molecular_function | 1403
Non-traceable Author Statement | molecular_function | 152
Traceable Author Statement | molecular_function | 145
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
experimental evidence | PSI-MOD | 8141
Inferred from Direct Assay | PSI-MOD | 16427
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
mass spectrometry evidence | PSI-MOD | 1666
Traceable Author Statement | PSI-MOD | 1
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Inferred from Direct Assay | sequence | 3
Inferred from Mutant Phenotype | sequence | 7
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
(110 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Key Residues | molecular_function | 1
Traceable Author Statement | PSI-MOD | 1
Non-traceable Author Statement | complementation | 1
Inferred from Physical Interaction | misc | 2
Traceable Author Statement | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Direct Assay | sequence | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
Traceable Author Statement | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
Inferred from Mutant Phenotype | sequence | 7
Other direct assay | fission_yeast_phenotype | 9
fusion protein localization evidence | gene_ex | 10
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | gene_ex | 15
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | molecular_function | 17
Immunolocalization experiment data | fission_yeast_phenotype | 18
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Western blot evidence | gene_ex | 22
Particle size and count assay | fission_yeast_phenotype | 23
Inferred from Expression Pattern | biological_process | 27
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
ribosome profiling evidence | gene_ex | 32
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Genetic Interaction | cellular_component | 49
Northern assay evidence | gene_ex | 50
Inferred from Mutant Phenotype | cellular_component | 50
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
Chromatography evidence | fission_yeast_phenotype | 55
RNA protection assay evidence | gene_ex | 59
Inferred from Biological aspect of Ancestor | biological_process | 77
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | gene_ex | 85
Inferred from Sequence Model | cellular_component | 90
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | warning | 102
Traceable Author Statement | cellular_component | 108
Inferred from Physical Interaction | biological_process | 109
Inferred by Curator | molecular_function | 110
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 132
reporter gene assay evidence | gene_ex | 144
Traceable Author Statement | molecular_function | 145
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
Non-traceable Author Statement | molecular_function | 152
Traceable Author Statement | biological_process | 158
Inferred from Experiment | cellular_component | 181
Non-traceable Author Statement | cellular_component | 184
Inferred from Sequence Model | biological_process | 200
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Experiment | biological_process | 213
Inferred from Physical Interaction | cellular_component | 278
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Experiment | molecular_function | 380
Non-traceable Author Statement | biological_process | 399
Inferred from Sequence or Structural Similarity | cellular_component | 408
western blot evidence used in manual assertion | gene_ex | 437
Inferred from Sequence or Structural Similarity | molecular_function | 466
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred by Curator | cellular_component | 528
Inferred from Electronic Annotation | biological_process | 534
quantitative PCR | fission_yeast_phenotype | 583
Inferred from Sequence or Structural Similarity | biological_process | 585
Inferred from Mutant Phenotype | molecular_function | 652
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Inferred from Genetic Interaction | biological_process | 661
Inferred from Direct Assay | biological_process | 705
Co-immunoprecipitation experiment | fission_yeast_phenotype | 763
northern assay evidence used in manual assertion | gene_ex | 791
competitive growth assay evidence | fission_yeast_phenotype | 878
Substance quantification evidence | fission_yeast_phenotype | 1011
Inferred from Electronic Annotation | cellular_component | 1012
Flow cytometry data | fission_yeast_phenotype | 1092
Inferred by Curator | biological_process | 1137
Inferred from Sequence Model | molecular_function | 1255
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1395
Inferred from Sequence Orthology | molecular_function | 1403
Inferred from Sequence Orthology | cellular_component | 1503
Inferred from high throughput mutant phenotype | molecular_function | 1535
Other | fission_yeast_phenotype | 1584
mass spectrometry evidence | PSI-MOD | 1666
Enzyme assay data | fission_yeast_phenotype | 1707
Inferred from Direct Assay | molecular_function | 1836
Inferred from Electronic Annotation | molecular_function | 1864
expression microarray evidence | gene_ex | 2017
gel electrophoresis evidence | fission_yeast_phenotype | 2146
reporter gene assay evidence | fission_yeast_phenotype | 2177
Inferred from Sequence Orthology | biological_process | 2280
Inferred from Physical Interaction | molecular_function | 2343
transcript expression level evidence | fission_yeast_phenotype | 3224
Western blot assay | fission_yeast_phenotype | 3505
Inferred from Mutant Phenotype | biological_process | 4074
Inferred from Direct Assay | cellular_component | 4968
Inferred from high throughput direct assay | cellular_component | 6882
experimental evidence | PSI-MOD | 8141
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
mass spectrometry evidence | gene_ex | 13688
Inferred from Direct Assay | PSI-MOD | 16427
experimental evidence | gene_ex | 20336
cell growth assay evidence | fission_yeast_phenotype | 28757
Microscopy | fission_yeast_phenotype | 33811
(110 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
cell growth assay evidence | fission_yeast_phenotype | 28757
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1395
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 763
competitive growth assay evidence | fission_yeast_phenotype | 878
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145
Enzyme assay data | fission_yeast_phenotype | 1707
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
experimental evidence | gene_ex | 20336
experimental evidence | PSI-MOD | 8141
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 2017
Flow cytometry data | fission_yeast_phenotype | 1092
fusion protein localization evidence | gene_ex | 10
gel electrophoresis evidence | fission_yeast_phenotype | 2146
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred by Curator | biological_process | 1137
Inferred by Curator | cellular_component | 528
Inferred by Curator | molecular_function | 110
Inferred from Biological aspect of Ancestor | biological_process | 77
Inferred from Direct Assay | biological_process | 705
Inferred from Direct Assay | cellular_component | 4968
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1836
Inferred from Direct Assay | PSI-MOD | 16427
Inferred from Direct Assay | sequence | 3
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 534
Inferred from Electronic Annotation | cellular_component | 1012
Inferred from Electronic Annotation | molecular_function | 1864
Inferred from Experiment | biological_process | 213
Inferred from Experiment | cellular_component | 181
Inferred from Experiment | molecular_function | 380
Inferred from Expression Pattern | biological_process | 27
Inferred from Genetic Interaction | biological_process | 661
Inferred from Genetic Interaction | cellular_component | 49
Inferred from Genetic Interaction | molecular_function | 132
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6882
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | biological_process | 4074
Inferred from Mutant Phenotype | cellular_component | 50
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 652
Inferred from Mutant Phenotype | sequence | 7
Inferred from Physical Interaction | biological_process | 109
Inferred from Physical Interaction | cellular_component | 278
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2343
Inferred from Sequence Model | biological_process | 200
Inferred from Sequence Model | cellular_component | 90
Inferred from Sequence Model | molecular_function | 1255
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | biological_process | 585
Inferred from Sequence or Structural Similarity | cellular_component | 408
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 466
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
Inferred from Sequence Orthology | biological_process | 2280
Inferred from Sequence Orthology | cellular_component | 1503
Inferred from Sequence Orthology | molecular_function | 1403
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
mass spectrometry evidence | PSI-MOD | 1666
Microscopy | fission_yeast_phenotype | 33811
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Non-traceable Author Statement | biological_process | 399
Non-traceable Author Statement | cellular_component | 184
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 152
Northern assay evidence | fission_yeast_phenotype | 118
Northern assay evidence | gene_ex | 50
northern assay evidence used in manual assertion | gene_ex | 791
Other | fission_yeast_phenotype | 1584
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 23
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 583
quantitative PCR | gene_ex | 85
reporter gene assay evidence | fission_yeast_phenotype | 2177
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 59
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Substance quantification evidence | fission_yeast_phenotype | 1011
Traceable Author Statement | biological_process | 158
Traceable Author Statement | cellular_component | 108
Traceable Author Statement | molecular_function | 145
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | sequence | 2
transcript expression level evidence | fission_yeast_phenotype | 3224
transcript expression level evidence | gene_ex | 15
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Western blot assay | fission_yeast_phenotype | 3505
Western blot evidence | gene_ex | 22
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
western blot evidence used in manual assertion | gene_ex | 437
(110 rows)
total:
count
--------
295068
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
1201 | PSI-MOD
2198 | molecular_function
2586 | cellular_component
3338 | biological_process
26254 | PomBase annotation extension terms
32035 | fission_yeast_phenotype
(6 rows)
total
-------
67612
(1 row)