counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 21 | ex_tools 29 | cat_act 30 | pathway 90 | m_f_g 186 | subunit_composition 237 | genome_org 414 | misc 437 | complementation 833 | EC numbers 954 | sequence 960 | name_description 1731 | warning 1861 | PomBase family or domain 2410 | disease_ontology 5136 | PomBase gene characterisation status 11178 | biological_process 12313 | molecular_function 16263 | cellular_component 25062 | species_dist 35838 | PSI-MOD 37800 | gene_ex 56851 | PomBase gene products 85634 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 1134 Inferred from Biological aspect of Ancestor | biological_process | 77 Inferred from Direct Assay | biological_process | 704 Inferred from Electronic Annotation | biological_process | 534 Inferred from Experiment | biological_process | 215 Inferred from Expression Pattern | biological_process | 27 Inferred from Genetic Interaction | biological_process | 662 Inferred from high throughput direct assay | biological_process | 17 Inferred from Mutant Phenotype | biological_process | 4082 Inferred from Physical Interaction | biological_process | 111 Inferred from Sequence Model | biological_process | 200 Inferred from Sequence or Structural Similarity | biological_process | 585 Inferred from Sequence Orthology | biological_process | 2274 Non-traceable Author Statement | biological_process | 398 Traceable Author Statement | biological_process | 158 Inferred by Curator | cellular_component | 531 Inferred from Direct Assay | cellular_component | 4979 Inferred from Electronic Annotation | cellular_component | 1012 Inferred from Experiment | cellular_component | 189 Inferred from Genetic Interaction | cellular_component | 49 Inferred from high throughput direct assay | cellular_component | 6882 Inferred from Mutant Phenotype | cellular_component | 50 Inferred from Physical Interaction | cellular_component | 281 Inferred from Sequence Model | cellular_component | 90 Inferred from Sequence or Structural Similarity | cellular_component | 408 Inferred from Sequence Orthology | cellular_component | 1501 Non-traceable Author Statement | cellular_component | 184 Traceable Author Statement | cellular_component | 107 Non-traceable Author Statement | complementation | 1 cell growth assay evidence | fission_yeast_phenotype | 28901 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1402 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 770 competitive growth assay evidence | fission_yeast_phenotype | 1430 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145 Enzyme assay data | fission_yeast_phenotype | 1725 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 experimental phenotypic evidence | fission_yeast_phenotype | 493 Flow cytometry data | fission_yeast_phenotype | 1114 gel electrophoresis evidence | fission_yeast_phenotype | 2156 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 33920 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1598 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 23 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 590 reporter gene assay evidence | fission_yeast_phenotype | 2177 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Substance quantification | fission_yeast_phenotype | 1 Substance quantification evidence | fission_yeast_phenotype | 1014 transcript expression level evidence | fission_yeast_phenotype | 3268 Western blot assay | fission_yeast_phenotype | 3560 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 experimental evidence | gene_ex | 20336 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 10 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 Northern assay evidence | gene_ex | 50 northern assay evidence used in manual assertion | gene_ex | 801 quantitative PCR | gene_ex | 85 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 59 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 16 Western blot evidence | gene_ex | 22 western blot evidence used in manual assertion | gene_ex | 439 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 111 Inferred from Direct Assay | molecular_function | 1848 Inferred from Electronic Annotation | molecular_function | 1856 Inferred from Experiment | molecular_function | 383 Inferred from Genetic Interaction | molecular_function | 131 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 660 Inferred from Physical Interaction | molecular_function | 2354 Inferred from Sequence Model | molecular_function | 1257 Inferred from Sequence or Structural Similarity | molecular_function | 466 Inferred from Sequence Orthology | molecular_function | 1398 Non-traceable Author Statement | molecular_function | 153 Traceable Author Statement | molecular_function | 143 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | PSI-MOD | 16442 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 mass spectrometry evidence | PSI-MOD | 1666 Traceable Author Statement | PSI-MOD | 1 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (111 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Substance quantification | fission_yeast_phenotype | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Key Residues | molecular_function | 1 Non-traceable Author Statement | complementation | 1 Inferred from Direct Assay | misc | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 4 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 10 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | gene_ex | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput direct assay | biological_process | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 Western blot evidence | gene_ex | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Particle size and count assay | fission_yeast_phenotype | 23 Inferred from Expression Pattern | biological_process | 27 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 ribosome profiling evidence | gene_ex | 32 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Mutant Phenotype | cellular_component | 50 Northern assay evidence | gene_ex | 50 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 Chromatography evidence | fission_yeast_phenotype | 55 RNA protection assay evidence | gene_ex | 59 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Inferred from Biological aspect of Ancestor | biological_process | 77 quantitative PCR | gene_ex | 85 Inferred from Sequence Model | cellular_component | 90 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 102 Traceable Author Statement | cellular_component | 107 Inferred by Curator | molecular_function | 111 Inferred from Physical Interaction | biological_process | 111 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 131 Traceable Author Statement | molecular_function | 143 reporter gene assay evidence | gene_ex | 144 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Non-traceable Author Statement | molecular_function | 153 Traceable Author Statement | biological_process | 158 Non-traceable Author Statement | cellular_component | 184 Inferred from Experiment | cellular_component | 189 Inferred from Sequence Model | biological_process | 200 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | biological_process | 215 Inferred from Physical Interaction | cellular_component | 281 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Experiment | molecular_function | 383 Non-traceable Author Statement | biological_process | 398 Inferred from Sequence or Structural Similarity | cellular_component | 408 western blot evidence used in manual assertion | gene_ex | 439 Inferred from Sequence or Structural Similarity | molecular_function | 466 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred by Curator | cellular_component | 531 Inferred from Electronic Annotation | biological_process | 534 Inferred from Sequence or Structural Similarity | biological_process | 585 quantitative PCR | fission_yeast_phenotype | 590 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Inferred from Mutant Phenotype | molecular_function | 660 Inferred from Genetic Interaction | biological_process | 662 Inferred from Direct Assay | biological_process | 704 Co-immunoprecipitation experiment | fission_yeast_phenotype | 770 northern assay evidence used in manual assertion | gene_ex | 801 Inferred from Electronic Annotation | cellular_component | 1012 Substance quantification evidence | fission_yeast_phenotype | 1014 Flow cytometry data | fission_yeast_phenotype | 1114 Inferred by Curator | biological_process | 1134 Inferred from Sequence Model | molecular_function | 1257 Inferred from Sequence Orthology | molecular_function | 1398 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1402 competitive growth assay evidence | fission_yeast_phenotype | 1430 Inferred from Sequence Orthology | cellular_component | 1501 Inferred from high throughput mutant phenotype | molecular_function | 1535 Other | fission_yeast_phenotype | 1598 mass spectrometry evidence | PSI-MOD | 1666 Enzyme assay data | fission_yeast_phenotype | 1725 Inferred from Direct Assay | molecular_function | 1848 Inferred from Electronic Annotation | molecular_function | 1856 expression microarray evidence | gene_ex | 2017 gel electrophoresis evidence | fission_yeast_phenotype | 2156 reporter gene assay evidence | fission_yeast_phenotype | 2177 Inferred from Sequence Orthology | biological_process | 2274 Inferred from Physical Interaction | molecular_function | 2354 transcript expression level evidence | fission_yeast_phenotype | 3268 Western blot assay | fission_yeast_phenotype | 3560 Inferred from Mutant Phenotype | biological_process | 4082 Inferred from Direct Assay | cellular_component | 4979 Inferred from high throughput direct assay | cellular_component | 6882 experimental evidence | PSI-MOD | 8141 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16442 experimental evidence | gene_ex | 20336 cell growth assay evidence | fission_yeast_phenotype | 28901 Microscopy | fission_yeast_phenotype | 33920 (111 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- cell growth assay evidence | fission_yeast_phenotype | 28901 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1402 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 770 competitive growth assay evidence | fission_yeast_phenotype | 1430 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145 Enzyme assay data | fission_yeast_phenotype | 1725 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31 experimental evidence | gene_ex | 20336 experimental evidence | PSI-MOD | 8141 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2017 Flow cytometry data | fission_yeast_phenotype | 1114 fusion protein localization evidence | gene_ex | 10 gel electrophoresis evidence | fission_yeast_phenotype | 2156 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1134 Inferred by Curator | cellular_component | 531 Inferred by Curator | molecular_function | 111 Inferred from Biological aspect of Ancestor | biological_process | 77 Inferred from Direct Assay | biological_process | 704 Inferred from Direct Assay | cellular_component | 4979 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1848 Inferred from Direct Assay | PSI-MOD | 16442 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 534 Inferred from Electronic Annotation | cellular_component | 1012 Inferred from Electronic Annotation | molecular_function | 1856 Inferred from Experiment | biological_process | 215 Inferred from Experiment | cellular_component | 189 Inferred from Experiment | molecular_function | 383 Inferred from Expression Pattern | biological_process | 27 Inferred from Genetic Interaction | biological_process | 662 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Genetic Interaction | molecular_function | 131 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6882 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 4082 Inferred from Mutant Phenotype | cellular_component | 50 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 660 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 111 Inferred from Physical Interaction | cellular_component | 281 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2354 Inferred from Sequence Model | biological_process | 200 Inferred from Sequence Model | cellular_component | 90 Inferred from Sequence Model | molecular_function | 1257 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | biological_process | 585 Inferred from Sequence or Structural Similarity | cellular_component | 408 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 466 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence Orthology | biological_process | 2274 Inferred from Sequence Orthology | cellular_component | 1501 Inferred from Sequence Orthology | molecular_function | 1398 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 mass spectrometry evidence | PSI-MOD | 1666 Microscopy | fission_yeast_phenotype | 33920 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Non-traceable Author Statement | biological_process | 398 Non-traceable Author Statement | cellular_component | 184 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 153 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 50 northern assay evidence used in manual assertion | gene_ex | 801 Other | fission_yeast_phenotype | 1598 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 23 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 590 quantitative PCR | gene_ex | 85 reporter gene assay evidence | fission_yeast_phenotype | 2177 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 59 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 1 Substance quantification evidence | fission_yeast_phenotype | 1014 Traceable Author Statement | biological_process | 158 Traceable Author Statement | cellular_component | 107 Traceable Author Statement | molecular_function | 143 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 transcript expression level evidence | fission_yeast_phenotype | 3268 transcript expression level evidence | gene_ex | 16 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Western blot assay | fission_yeast_phenotype | 3560 Western blot evidence | gene_ex | 22 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 439 (111 rows) total: count -------- 296274 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1201 | PSI-MOD 2231 | molecular_function 2616 | cellular_component 3357 | biological_process 26559 | PomBase annotation extension terms 32218 | fission_yeast_phenotype (6 rows) total ------- 68182 (1 row)