counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
21 | ex_tools
29 | cat_act
30 | pathway
90 | m_f_g
186 | subunit_composition
237 | genome_org
414 | misc
437 | complementation
833 | EC numbers
954 | sequence
960 | name_description
1763 | warning
1862 | PomBase family or domain
2433 | disease_ontology
5136 | PomBase gene characterisation status
11186 | biological_process
12318 | molecular_function
16307 | cellular_component
25062 | species_dist
35840 | PSI-MOD
37800 | gene_ex
56881 | PomBase gene products
85757 | fission_yeast_phenotype
(24 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred by Curator | biological_process | 1131
Inferred from Biological aspect of Ancestor | biological_process | 77
Inferred from Direct Assay | biological_process | 708
Inferred from Electronic Annotation | biological_process | 534
Inferred from Experiment | biological_process | 216
Inferred from Expression Pattern | biological_process | 27
Inferred from Genetic Interaction | biological_process | 662
Inferred from high throughput direct assay | biological_process | 17
Inferred from Mutant Phenotype | biological_process | 4086
Inferred from Physical Interaction | biological_process | 111
Inferred from Sequence Model | biological_process | 200
Inferred from Sequence or Structural Similarity | biological_process | 588
Inferred from Sequence Orthology | biological_process | 2274
Non-traceable Author Statement | biological_process | 398
Traceable Author Statement | biological_process | 157
Inferred by Curator | cellular_component | 531
Inferred from Direct Assay | cellular_component | 5003
Inferred from Electronic Annotation | cellular_component | 1016
Inferred from Experiment | cellular_component | 189
Inferred from Genetic Interaction | cellular_component | 49
Inferred from high throughput direct assay | cellular_component | 6882
Inferred from Mutant Phenotype | cellular_component | 50
Inferred from Physical Interaction | cellular_component | 283
Inferred from Sequence Model | cellular_component | 90
Inferred from Sequence or Structural Similarity | cellular_component | 408
Inferred from Sequence Orthology | cellular_component | 1516
Non-traceable Author Statement | cellular_component | 183
Traceable Author Statement | cellular_component | 107
Non-traceable Author Statement | complementation | 1
cell growth assay evidence | fission_yeast_phenotype | 28936
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1406
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 776
competitive growth assay evidence | fission_yeast_phenotype | 1430
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145
Enzyme assay data | fission_yeast_phenotype | 1725
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
experimental phenotypic evidence | fission_yeast_phenotype | 493
Flow cytometry data | fission_yeast_phenotype | 1114
gel electrophoresis evidence | fission_yeast_phenotype | 2156
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Immunolocalization experiment data | fission_yeast_phenotype | 18
Microscopy | fission_yeast_phenotype | 33961
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1612
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 23
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 590
reporter gene assay evidence | fission_yeast_phenotype | 2178
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Substance quantification | fission_yeast_phenotype | 1019
transcript expression level evidence | fission_yeast_phenotype | 3286
Western blot assay | fission_yeast_phenotype | 3560
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
experimental evidence | gene_ex | 20336
expression microarray evidence | gene_ex | 2017
fusion protein localization evidence | gene_ex | 10
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
Northern assay evidence | gene_ex | 50
northern assay evidence used in manual assertion | gene_ex | 801
quantitative PCR | gene_ex | 85
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 59
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | gene_ex | 16
Western blot evidence | gene_ex | 22
western blot evidence used in manual assertion | gene_ex | 439
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 111
Inferred from Direct Assay | molecular_function | 1854
Inferred from Electronic Annotation | molecular_function | 1852
Inferred from Experiment | molecular_function | 381
Inferred from Genetic Interaction | molecular_function | 132
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 660
Inferred from Physical Interaction | molecular_function | 2357
Inferred from Sequence Model | molecular_function | 1257
Inferred from Sequence or Structural Similarity | molecular_function | 466
Inferred from Sequence Orthology | molecular_function | 1398
Non-traceable Author Statement | molecular_function | 153
Traceable Author Statement | molecular_function | 144
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
experimental evidence | PSI-MOD | 8141
Inferred from Direct Assay | PSI-MOD | 16444
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
mass spectrometry evidence | PSI-MOD | 1666
Traceable Author Statement | PSI-MOD | 1
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Inferred from Direct Assay | sequence | 3
Inferred from Mutant Phenotype | sequence | 7
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
(110 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Non-traceable Author Statement | complementation | 1
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Physical Interaction | misc | 2
Inferred from Sequence Model | PSI-MOD | 2
Traceable Author Statement | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Inferred from Direct Assay | sequence | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
Traceable Author Statement | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
Inferred from Mutant Phenotype | sequence | 7
Other direct assay | fission_yeast_phenotype | 9
fusion protein localization evidence | gene_ex | 10
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | gene_ex | 16
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | molecular_function | 17
Immunolocalization experiment data | fission_yeast_phenotype | 18
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Western blot evidence | gene_ex | 22
Particle size and count assay | fission_yeast_phenotype | 23
Inferred from Expression Pattern | biological_process | 27
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
ribosome profiling evidence | gene_ex | 32
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Genetic Interaction | cellular_component | 49
Northern assay evidence | gene_ex | 50
Inferred from Mutant Phenotype | cellular_component | 50
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
Chromatography evidence | fission_yeast_phenotype | 55
RNA protection assay evidence | gene_ex | 59
Inferred from Biological aspect of Ancestor | biological_process | 77
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | gene_ex | 85
Inferred from Sequence Model | cellular_component | 90
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | warning | 102
Traceable Author Statement | cellular_component | 107
Inferred by Curator | molecular_function | 111
Inferred from Physical Interaction | biological_process | 111
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 132
reporter gene assay evidence | gene_ex | 144
Traceable Author Statement | molecular_function | 144
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
Non-traceable Author Statement | molecular_function | 153
Traceable Author Statement | biological_process | 157
Non-traceable Author Statement | cellular_component | 183
Inferred from Experiment | cellular_component | 189
Inferred from Sequence Model | biological_process | 200
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Experiment | biological_process | 216
Inferred from Physical Interaction | cellular_component | 283
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Experiment | molecular_function | 381
Non-traceable Author Statement | biological_process | 398
Inferred from Sequence or Structural Similarity | cellular_component | 408
western blot evidence used in manual assertion | gene_ex | 439
Inferred from Sequence or Structural Similarity | molecular_function | 466
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred by Curator | cellular_component | 531
Inferred from Electronic Annotation | biological_process | 534
Inferred from Sequence or Structural Similarity | biological_process | 588
quantitative PCR | fission_yeast_phenotype | 590
Inferred from Mutant Phenotype | molecular_function | 660
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Inferred from Genetic Interaction | biological_process | 662
Inferred from Direct Assay | biological_process | 708
Co-immunoprecipitation experiment | fission_yeast_phenotype | 776
northern assay evidence used in manual assertion | gene_ex | 801
Inferred from Electronic Annotation | cellular_component | 1016
Substance quantification | fission_yeast_phenotype | 1019
Flow cytometry data | fission_yeast_phenotype | 1114
Inferred by Curator | biological_process | 1131
Inferred from Sequence Model | molecular_function | 1257
Inferred from Sequence Orthology | molecular_function | 1398
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1406
competitive growth assay evidence | fission_yeast_phenotype | 1430
Inferred from Sequence Orthology | cellular_component | 1516
Inferred from high throughput mutant phenotype | molecular_function | 1535
Other | fission_yeast_phenotype | 1612
mass spectrometry evidence | PSI-MOD | 1666
Enzyme assay data | fission_yeast_phenotype | 1725
Inferred from Electronic Annotation | molecular_function | 1852
Inferred from Direct Assay | molecular_function | 1854
expression microarray evidence | gene_ex | 2017
gel electrophoresis evidence | fission_yeast_phenotype | 2156
reporter gene assay evidence | fission_yeast_phenotype | 2178
Inferred from Sequence Orthology | biological_process | 2274
Inferred from Physical Interaction | molecular_function | 2357
transcript expression level evidence | fission_yeast_phenotype | 3286
Western blot assay | fission_yeast_phenotype | 3560
Inferred from Mutant Phenotype | biological_process | 4086
Inferred from Direct Assay | cellular_component | 5003
Inferred from high throughput direct assay | cellular_component | 6882
experimental evidence | PSI-MOD | 8141
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
mass spectrometry evidence | gene_ex | 13688
Inferred from Direct Assay | PSI-MOD | 16444
experimental evidence | gene_ex | 20336
cell growth assay evidence | fission_yeast_phenotype | 28936
Microscopy | fission_yeast_phenotype | 33961
(110 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
cell growth assay evidence | fission_yeast_phenotype | 28936
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1406
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 776
competitive growth assay evidence | fission_yeast_phenotype | 1430
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145
Enzyme assay data | fission_yeast_phenotype | 1725
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 31
experimental evidence | gene_ex | 20336
experimental evidence | PSI-MOD | 8141
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 2017
Flow cytometry data | fission_yeast_phenotype | 1114
fusion protein localization evidence | gene_ex | 10
gel electrophoresis evidence | fission_yeast_phenotype | 2156
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred by Curator | biological_process | 1131
Inferred by Curator | cellular_component | 531
Inferred by Curator | molecular_function | 111
Inferred from Biological aspect of Ancestor | biological_process | 77
Inferred from Direct Assay | biological_process | 708
Inferred from Direct Assay | cellular_component | 5003
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1854
Inferred from Direct Assay | PSI-MOD | 16444
Inferred from Direct Assay | sequence | 3
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 534
Inferred from Electronic Annotation | cellular_component | 1016
Inferred from Electronic Annotation | molecular_function | 1852
Inferred from Experiment | biological_process | 216
Inferred from Experiment | cellular_component | 189
Inferred from Experiment | molecular_function | 381
Inferred from Expression Pattern | biological_process | 27
Inferred from Genetic Interaction | biological_process | 662
Inferred from Genetic Interaction | cellular_component | 49
Inferred from Genetic Interaction | molecular_function | 132
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6882
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | biological_process | 4086
Inferred from Mutant Phenotype | cellular_component | 50
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 660
Inferred from Mutant Phenotype | sequence | 7
Inferred from Physical Interaction | biological_process | 111
Inferred from Physical Interaction | cellular_component | 283
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2357
Inferred from Sequence Model | biological_process | 200
Inferred from Sequence Model | cellular_component | 90
Inferred from Sequence Model | molecular_function | 1257
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | biological_process | 588
Inferred from Sequence or Structural Similarity | cellular_component | 408
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 466
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
Inferred from Sequence Orthology | biological_process | 2274
Inferred from Sequence Orthology | cellular_component | 1516
Inferred from Sequence Orthology | molecular_function | 1398
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
mass spectrometry evidence | PSI-MOD | 1666
Microscopy | fission_yeast_phenotype | 33961
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Non-traceable Author Statement | biological_process | 398
Non-traceable Author Statement | cellular_component | 183
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 153
Northern assay evidence | fission_yeast_phenotype | 118
Northern assay evidence | gene_ex | 50
northern assay evidence used in manual assertion | gene_ex | 801
Other | fission_yeast_phenotype | 1612
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 23
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 590
quantitative PCR | gene_ex | 85
reporter gene assay evidence | fission_yeast_phenotype | 2178
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 59
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Substance quantification | fission_yeast_phenotype | 1019
Traceable Author Statement | biological_process | 157
Traceable Author Statement | cellular_component | 107
Traceable Author Statement | molecular_function | 144
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | sequence | 2
transcript expression level evidence | fission_yeast_phenotype | 3286
transcript expression level evidence | gene_ex | 16
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Western blot assay | fission_yeast_phenotype | 3560
Western blot evidence | gene_ex | 22
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
western blot evidence used in manual assertion | gene_ex | 439
(110 rows)
total:
count
--------
296542
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
1201 | PSI-MOD
2234 | molecular_function
2620 | cellular_component
3362 | biological_process
26648 | PomBase annotation extension terms
32286 | fission_yeast_phenotype
(6 rows)
total
-------
68351
(1 row)