counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
21 | ex_tools
29 | cat_act
30 | pathway
90 | m_f_g
186 | subunit_composition
237 | genome_org
415 | misc
444 | complementation
833 | EC numbers
954 | sequence
961 | name_description
1763 | warning
1862 | PomBase family or domain
2531 | disease_ontology
5136 | PomBase gene characterisation status
11148 | biological_process
12381 | molecular_function
16353 | cellular_component
25065 | species_dist
35842 | PSI-MOD
37815 | gene_ex
56988 | PomBase gene products
86500 | fission_yeast_phenotype
(24 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred by Curator | biological_process | 1128
Inferred from Biological aspect of Ancestor | biological_process | 68
Inferred from Direct Assay | biological_process | 725
Inferred from Electronic Annotation | biological_process | 536
Inferred from Experiment | biological_process | 219
Inferred from Expression Pattern | biological_process | 27
Inferred from Genetic Interaction | biological_process | 661
Inferred from high throughput direct assay | biological_process | 17
Inferred from Mutant Phenotype | biological_process | 4045
Inferred from Physical Interaction | biological_process | 111
Inferred from Sequence Model | biological_process | 202
Inferred from Sequence or Structural Similarity | biological_process | 588
Inferred from Sequence Orthology | biological_process | 2271
Non-traceable Author Statement | biological_process | 394
Traceable Author Statement | biological_process | 156
Inferred by Curator | cellular_component | 528
Inferred from Direct Assay | cellular_component | 5044
Inferred from Electronic Annotation | cellular_component | 1004
Inferred from Experiment | cellular_component | 189
Inferred from Genetic Interaction | cellular_component | 49
Inferred from high throughput direct assay | cellular_component | 6880
Inferred from Mutant Phenotype | cellular_component | 50
Inferred from Physical Interaction | cellular_component | 287
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence or Structural Similarity | cellular_component | 408
Inferred from Sequence Orthology | cellular_component | 1520
Non-traceable Author Statement | cellular_component | 186
Traceable Author Statement | cellular_component | 107
Non-traceable Author Statement | complementation | 1
cell growth assay evidence | fission_yeast_phenotype | 29165
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1421
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 798
competitive growth assay evidence | fission_yeast_phenotype | 1430
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145
Enzyme assay data | fission_yeast_phenotype | 1743
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 33
experimental phenotypic evidence | fission_yeast_phenotype | 493
Flow cytometry data | fission_yeast_phenotype | 1117
gel electrophoresis evidence | fission_yeast_phenotype | 2168
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Immunolocalization experiment data | fission_yeast_phenotype | 18
Microscopy | fission_yeast_phenotype | 34196
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1655
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 23
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 594
reporter gene assay evidence | fission_yeast_phenotype | 2192
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Substance quantification | fission_yeast_phenotype | 1
Substance quantification evidence | fission_yeast_phenotype | 1019
transcript expression level evidence | fission_yeast_phenotype | 3337
Western blot assay | fission_yeast_phenotype | 3654
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
experimental evidence | gene_ex | 20336
expression microarray evidence | gene_ex | 2017
fusion protein localization evidence | gene_ex | 11
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
Northern assay evidence | gene_ex | 52
northern assay evidence used in manual assertion | gene_ex | 801
quantitative PCR | gene_ex | 88
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 59
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | gene_ex | 16
Western blot evidence | gene_ex | 24
western blot evidence used in manual assertion | gene_ex | 446
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 110
Inferred from Direct Assay | molecular_function | 1883
Inferred from Electronic Annotation | molecular_function | 1856
Inferred from Experiment | molecular_function | 394
Inferred from Genetic Interaction | molecular_function | 130
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 659
Inferred from Physical Interaction | molecular_function | 2386
Inferred from Sequence Model | molecular_function | 1255
Inferred from Sequence or Structural Similarity | molecular_function | 466
Inferred from Sequence Orthology | molecular_function | 1394
Non-traceable Author Statement | molecular_function | 151
Traceable Author Statement | molecular_function | 144
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
experimental evidence | PSI-MOD | 8141
Inferred from Direct Assay | PSI-MOD | 16446
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
mass spectrometry evidence | PSI-MOD | 1666
Traceable Author Statement | PSI-MOD | 1
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Inferred from Direct Assay | sequence | 3
Inferred from Mutant Phenotype | sequence | 7
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
(111 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Key Residues | molecular_function | 1
Substance quantification | fission_yeast_phenotype | 1
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Direct Assay | misc | 1
Non-traceable Author Statement | complementation | 1
Traceable Author Statement | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Inferred from Physical Interaction | misc | 2
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Direct Assay | sequence | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
Traceable Author Statement | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
Inferred from Mutant Phenotype | sequence | 7
Other direct assay | fission_yeast_phenotype | 9
fusion protein localization evidence | gene_ex | 11
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | gene_ex | 16
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | molecular_function | 17
Immunolocalization experiment data | fission_yeast_phenotype | 18
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Particle size and count assay | fission_yeast_phenotype | 23
Western blot evidence | gene_ex | 24
Inferred from Expression Pattern | biological_process | 27
ribosome profiling evidence | gene_ex | 32
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 33
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Genetic Interaction | cellular_component | 49
Inferred from Mutant Phenotype | cellular_component | 50
Northern assay evidence | gene_ex | 52
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
Chromatography evidence | fission_yeast_phenotype | 55
RNA protection assay evidence | gene_ex | 59
Inferred from Biological aspect of Ancestor | biological_process | 68
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | gene_ex | 88
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence or Structural Similarity | warning | 102
Traceable Author Statement | cellular_component | 107
Inferred by Curator | molecular_function | 110
Inferred from Physical Interaction | biological_process | 111
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 130
Traceable Author Statement | molecular_function | 144
reporter gene assay evidence | gene_ex | 144
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145
Non-traceable Author Statement | molecular_function | 151
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
Traceable Author Statement | biological_process | 156
Non-traceable Author Statement | cellular_component | 186
Inferred from Experiment | cellular_component | 189
Inferred from Sequence Model | biological_process | 202
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Experiment | biological_process | 219
Inferred from Physical Interaction | cellular_component | 287
Inferred from Sequence or Structural Similarity | sequence | 355
Non-traceable Author Statement | biological_process | 394
Inferred from Experiment | molecular_function | 394
Inferred from Sequence or Structural Similarity | cellular_component | 408
western blot evidence used in manual assertion | gene_ex | 446
Inferred from Sequence or Structural Similarity | molecular_function | 466
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred by Curator | cellular_component | 528
Inferred from Electronic Annotation | biological_process | 536
Inferred from Sequence or Structural Similarity | biological_process | 588
quantitative PCR | fission_yeast_phenotype | 594
Inferred from Mutant Phenotype | molecular_function | 659
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Inferred from Genetic Interaction | biological_process | 661
Inferred from Direct Assay | biological_process | 725
Co-immunoprecipitation experiment | fission_yeast_phenotype | 798
northern assay evidence used in manual assertion | gene_ex | 801
Inferred from Electronic Annotation | cellular_component | 1004
Substance quantification evidence | fission_yeast_phenotype | 1019
Flow cytometry data | fission_yeast_phenotype | 1117
Inferred by Curator | biological_process | 1128
Inferred from Sequence Model | molecular_function | 1255
Inferred from Sequence Orthology | molecular_function | 1394
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1421
competitive growth assay evidence | fission_yeast_phenotype | 1430
Inferred from Sequence Orthology | cellular_component | 1520
Inferred from high throughput mutant phenotype | molecular_function | 1535
Other | fission_yeast_phenotype | 1655
mass spectrometry evidence | PSI-MOD | 1666
Enzyme assay data | fission_yeast_phenotype | 1743
Inferred from Electronic Annotation | molecular_function | 1856
Inferred from Direct Assay | molecular_function | 1883
expression microarray evidence | gene_ex | 2017
gel electrophoresis evidence | fission_yeast_phenotype | 2168
reporter gene assay evidence | fission_yeast_phenotype | 2192
Inferred from Sequence Orthology | biological_process | 2271
Inferred from Physical Interaction | molecular_function | 2386
transcript expression level evidence | fission_yeast_phenotype | 3337
Western blot assay | fission_yeast_phenotype | 3654
Inferred from Mutant Phenotype | biological_process | 4045
Inferred from Direct Assay | cellular_component | 5044
Inferred from high throughput direct assay | cellular_component | 6880
experimental evidence | PSI-MOD | 8141
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
mass spectrometry evidence | gene_ex | 13688
Inferred from Direct Assay | PSI-MOD | 16446
experimental evidence | gene_ex | 20336
cell growth assay evidence | fission_yeast_phenotype | 29165
Microscopy | fission_yeast_phenotype | 34196
(111 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
cell growth assay evidence | fission_yeast_phenotype | 29165
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1421
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 798
competitive growth assay evidence | fission_yeast_phenotype | 1430
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145
Enzyme assay data | fission_yeast_phenotype | 1743
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 33
experimental evidence | gene_ex | 20336
experimental evidence | PSI-MOD | 8141
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 2017
Flow cytometry data | fission_yeast_phenotype | 1117
fusion protein localization evidence | gene_ex | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2168
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred by Curator | biological_process | 1128
Inferred by Curator | cellular_component | 528
Inferred by Curator | molecular_function | 110
Inferred from Biological aspect of Ancestor | biological_process | 68
Inferred from Direct Assay | biological_process | 725
Inferred from Direct Assay | cellular_component | 5044
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1883
Inferred from Direct Assay | PSI-MOD | 16446
Inferred from Direct Assay | sequence | 3
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 536
Inferred from Electronic Annotation | cellular_component | 1004
Inferred from Electronic Annotation | molecular_function | 1856
Inferred from Experiment | biological_process | 219
Inferred from Experiment | cellular_component | 189
Inferred from Experiment | molecular_function | 394
Inferred from Expression Pattern | biological_process | 27
Inferred from Genetic Interaction | biological_process | 661
Inferred from Genetic Interaction | cellular_component | 49
Inferred from Genetic Interaction | molecular_function | 130
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6880
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | biological_process | 4045
Inferred from Mutant Phenotype | cellular_component | 50
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 659
Inferred from Mutant Phenotype | sequence | 7
Inferred from Physical Interaction | biological_process | 111
Inferred from Physical Interaction | cellular_component | 287
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2386
Inferred from Sequence Model | biological_process | 202
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence Model | molecular_function | 1255
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | biological_process | 588
Inferred from Sequence or Structural Similarity | cellular_component | 408
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 466
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
Inferred from Sequence Orthology | biological_process | 2271
Inferred from Sequence Orthology | cellular_component | 1520
Inferred from Sequence Orthology | molecular_function | 1394
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
mass spectrometry evidence | PSI-MOD | 1666
Microscopy | fission_yeast_phenotype | 34196
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Non-traceable Author Statement | biological_process | 394
Non-traceable Author Statement | cellular_component | 186
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 151
Northern assay evidence | fission_yeast_phenotype | 118
Northern assay evidence | gene_ex | 52
northern assay evidence used in manual assertion | gene_ex | 801
Other | fission_yeast_phenotype | 1655
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 23
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 594
quantitative PCR | gene_ex | 88
reporter gene assay evidence | fission_yeast_phenotype | 2192
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 52
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 59
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Substance quantification | fission_yeast_phenotype | 1
Substance quantification evidence | fission_yeast_phenotype | 1019
Traceable Author Statement | biological_process | 156
Traceable Author Statement | cellular_component | 107
Traceable Author Statement | molecular_function | 144
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | sequence | 2
transcript expression level evidence | fission_yeast_phenotype | 3337
transcript expression level evidence | gene_ex | 16
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424
Western blot assay | fission_yeast_phenotype | 3654
Western blot evidence | gene_ex | 24
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
western blot evidence used in manual assertion | gene_ex | 446
(111 rows)
total:
count
--------
297590
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
1202 | PSI-MOD
2270 | molecular_function
2656 | cellular_component
3383 | biological_process
27117 | PomBase annotation extension terms
32610 | fission_yeast_phenotype
(6 rows)
total
-------
69238
(1 row)