counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 21 | ex_tools 27 | cat_act 30 | pathway 90 | m_f_g 186 | subunit_composition 237 | genome_org 416 | misc 446 | complementation 833 | EC numbers 954 | sequence 961 | name_description 1766 | warning 1866 | PomBase family or domain 2532 | disease_ontology 5136 | PomBase gene characterisation status 11145 | biological_process 12418 | molecular_function 16374 | cellular_component 25065 | species_dist 35853 | PSI-MOD 37840 | gene_ex 57047 | PomBase gene products 87043 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 1129 Inferred from Biological aspect of Ancestor | biological_process | 68 Inferred from Direct Assay | biological_process | 722 Inferred from Electronic Annotation | biological_process | 532 Inferred from Experiment | biological_process | 219 Inferred from Expression Pattern | biological_process | 27 Inferred from Genetic Interaction | biological_process | 659 Inferred from high throughput direct assay | biological_process | 17 Inferred from Mutant Phenotype | biological_process | 4047 Inferred from Physical Interaction | biological_process | 111 Inferred from Sequence Model | biological_process | 202 Inferred from Sequence or Structural Similarity | biological_process | 589 Inferred from Sequence Orthology | biological_process | 2271 Non-traceable Author Statement | biological_process | 395 Traceable Author Statement | biological_process | 157 Inferred by Curator | cellular_component | 528 Inferred from Direct Assay | cellular_component | 5066 Inferred from Electronic Annotation | cellular_component | 1002 Inferred from Experiment | cellular_component | 189 Inferred from Genetic Interaction | cellular_component | 49 Inferred from high throughput direct assay | cellular_component | 6880 Inferred from Mutant Phenotype | cellular_component | 50 Inferred from Physical Interaction | cellular_component | 288 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence or Structural Similarity | cellular_component | 408 Inferred from Sequence Orthology | cellular_component | 1521 Non-traceable Author Statement | cellular_component | 185 Traceable Author Statement | cellular_component | 107 Non-traceable Author Statement | complementation | 1 cell growth assay evidence | fission_yeast_phenotype | 29303 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1423 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 800 competitive growth assay evidence | fission_yeast_phenotype | 1429 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145 Enzyme assay data | fission_yeast_phenotype | 1749 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 33 experimental phenotypic evidence | fission_yeast_phenotype | 493 Flow cytometry data | fission_yeast_phenotype | 1124 gel electrophoresis evidence | fission_yeast_phenotype | 2184 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 34478 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1676 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 23 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 594 reporter gene assay evidence | fission_yeast_phenotype | 2198 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Substance quantification | fission_yeast_phenotype | 1 Substance quantification evidence | fission_yeast_phenotype | 1025 transcript expression level evidence | fission_yeast_phenotype | 3358 Western blot assay | fission_yeast_phenotype | 3691 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 experimental evidence | gene_ex | 20336 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 11 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 Northern assay evidence | gene_ex | 67 northern assay evidence used in manual assertion | gene_ex | 801 quantitative PCR | gene_ex | 88 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 59 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 16 Western blot evidence | gene_ex | 25 western blot evidence used in manual assertion | gene_ex | 447 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 109 Inferred from Direct Assay | molecular_function | 1899 Inferred from Electronic Annotation | molecular_function | 1851 Inferred from Experiment | molecular_function | 400 Inferred from Genetic Interaction | molecular_function | 130 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 665 Inferred from Physical Interaction | molecular_function | 2414 Inferred from Sequence Model | molecular_function | 1239 Inferred from Sequence or Structural Similarity | molecular_function | 468 Inferred from Sequence Orthology | molecular_function | 1395 Non-traceable Author Statement | molecular_function | 152 Traceable Author Statement | molecular_function | 143 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | PSI-MOD | 16457 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 mass spectrometry evidence | PSI-MOD | 1666 Traceable Author Statement | PSI-MOD | 1 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (111 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Substance quantification | fission_yeast_phenotype | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Physical Interaction | misc | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Direct Assay | sequence | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | gene_ex | 16 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | molecular_function | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Particle size and count assay | fission_yeast_phenotype | 23 Western blot evidence | gene_ex | 25 Inferred from Expression Pattern | biological_process | 27 ribosome profiling evidence | gene_ex | 32 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 33 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Mutant Phenotype | cellular_component | 50 Chromatography evidence | fission_yeast_phenotype | 55 RNA protection assay evidence | gene_ex | 59 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 Northern assay evidence | gene_ex | 67 Inferred from Biological aspect of Ancestor | biological_process | 68 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | gene_ex | 88 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence or Structural Similarity | warning | 102 Traceable Author Statement | cellular_component | 107 Inferred by Curator | molecular_function | 109 Inferred from Physical Interaction | biological_process | 111 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 130 Traceable Author Statement | molecular_function | 143 reporter gene assay evidence | gene_ex | 144 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Non-traceable Author Statement | molecular_function | 152 Traceable Author Statement | biological_process | 157 Non-traceable Author Statement | cellular_component | 185 Inferred from Experiment | cellular_component | 189 Inferred from Sequence Model | biological_process | 202 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | biological_process | 219 Inferred from Physical Interaction | cellular_component | 288 Inferred from Sequence or Structural Similarity | sequence | 355 Non-traceable Author Statement | biological_process | 395 Inferred from Experiment | molecular_function | 400 Inferred from Sequence or Structural Similarity | cellular_component | 408 western blot evidence used in manual assertion | gene_ex | 447 Inferred from Sequence or Structural Similarity | molecular_function | 468 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred by Curator | cellular_component | 528 Inferred from Electronic Annotation | biological_process | 532 Inferred from Sequence or Structural Similarity | biological_process | 589 quantitative PCR | fission_yeast_phenotype | 594 Inferred from Genetic Interaction | biological_process | 659 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Inferred from Mutant Phenotype | molecular_function | 665 Inferred from Direct Assay | biological_process | 722 Co-immunoprecipitation experiment | fission_yeast_phenotype | 800 northern assay evidence used in manual assertion | gene_ex | 801 Inferred from Electronic Annotation | cellular_component | 1002 Substance quantification evidence | fission_yeast_phenotype | 1025 Flow cytometry data | fission_yeast_phenotype | 1124 Inferred by Curator | biological_process | 1129 Inferred from Sequence Model | molecular_function | 1239 Inferred from Sequence Orthology | molecular_function | 1395 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1423 competitive growth assay evidence | fission_yeast_phenotype | 1429 Inferred from Sequence Orthology | cellular_component | 1521 Inferred from high throughput mutant phenotype | molecular_function | 1535 mass spectrometry evidence | PSI-MOD | 1666 Other | fission_yeast_phenotype | 1676 Enzyme assay data | fission_yeast_phenotype | 1749 Inferred from Electronic Annotation | molecular_function | 1851 Inferred from Direct Assay | molecular_function | 1899 expression microarray evidence | gene_ex | 2017 gel electrophoresis evidence | fission_yeast_phenotype | 2184 reporter gene assay evidence | fission_yeast_phenotype | 2198 Inferred from Sequence Orthology | biological_process | 2271 Inferred from Physical Interaction | molecular_function | 2414 transcript expression level evidence | fission_yeast_phenotype | 3358 Western blot assay | fission_yeast_phenotype | 3691 Inferred from Mutant Phenotype | biological_process | 4047 Inferred from Direct Assay | cellular_component | 5066 Inferred from high throughput direct assay | cellular_component | 6880 experimental evidence | PSI-MOD | 8141 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16457 experimental evidence | gene_ex | 20336 cell growth assay evidence | fission_yeast_phenotype | 29303 Microscopy | fission_yeast_phenotype | 34478 (111 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- cell growth assay evidence | fission_yeast_phenotype | 29303 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1423 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 800 competitive growth assay evidence | fission_yeast_phenotype | 1429 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 145 Enzyme assay data | fission_yeast_phenotype | 1749 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 33 experimental evidence | gene_ex | 20336 experimental evidence | PSI-MOD | 8141 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2017 Flow cytometry data | fission_yeast_phenotype | 1124 fusion protein localization evidence | gene_ex | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2184 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1129 Inferred by Curator | cellular_component | 528 Inferred by Curator | molecular_function | 109 Inferred from Biological aspect of Ancestor | biological_process | 68 Inferred from Direct Assay | biological_process | 722 Inferred from Direct Assay | cellular_component | 5066 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1899 Inferred from Direct Assay | PSI-MOD | 16457 Inferred from Direct Assay | sequence | 3 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 532 Inferred from Electronic Annotation | cellular_component | 1002 Inferred from Electronic Annotation | molecular_function | 1851 Inferred from Experiment | biological_process | 219 Inferred from Experiment | cellular_component | 189 Inferred from Experiment | molecular_function | 400 Inferred from Expression Pattern | biological_process | 27 Inferred from Genetic Interaction | biological_process | 659 Inferred from Genetic Interaction | cellular_component | 49 Inferred from Genetic Interaction | molecular_function | 130 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6880 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 4047 Inferred from Mutant Phenotype | cellular_component | 50 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 665 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 111 Inferred from Physical Interaction | cellular_component | 288 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2414 Inferred from Sequence Model | biological_process | 202 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence Model | molecular_function | 1239 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | biological_process | 589 Inferred from Sequence or Structural Similarity | cellular_component | 408 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 468 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence Orthology | biological_process | 2271 Inferred from Sequence Orthology | cellular_component | 1521 Inferred from Sequence Orthology | molecular_function | 1395 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 mass spectrometry evidence | PSI-MOD | 1666 Microscopy | fission_yeast_phenotype | 34478 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Non-traceable Author Statement | biological_process | 395 Non-traceable Author Statement | cellular_component | 185 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 152 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 67 northern assay evidence used in manual assertion | gene_ex | 801 Other | fission_yeast_phenotype | 1676 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 23 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 594 quantitative PCR | gene_ex | 88 reporter gene assay evidence | fission_yeast_phenotype | 2198 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 59 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 1 Substance quantification evidence | fission_yeast_phenotype | 1025 Traceable Author Statement | biological_process | 157 Traceable Author Statement | cellular_component | 107 Traceable Author Statement | molecular_function | 143 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 transcript expression level evidence | fission_yeast_phenotype | 3358 transcript expression level evidence | gene_ex | 16 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 9424 Western blot assay | fission_yeast_phenotype | 3691 Western blot evidence | gene_ex | 25 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 447 (111 rows) total: count -------- 298292 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1202 | PSI-MOD 2301 | molecular_function 2672 | cellular_component 3405 | biological_process 27473 | PomBase annotation extension terms 32867 | fission_yeast_phenotype (6 rows) total ------- 69920 (1 row)