counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
21 | ex_tools
27 | cat_act
30 | pathway
90 | m_f_g
187 | subunit_composition
237 | genome_org
416 | misc
446 | complementation
833 | EC numbers
954 | sequence
961 | name_description
1766 | warning
1866 | PomBase family or domain
2526 | disease_ontology
5136 | PomBase gene characterisation status
11087 | biological_process
12258 | molecular_function
16420 | cellular_component
25070 | species_dist
37848 | gene_ex
47171 | PSI-MOD
57243 | PomBase gene products
88398 | fission_yeast_phenotype
(24 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred by Curator | biological_process | 1137
Inferred from Biological aspect of Ancestor | biological_process | 82
Inferred from Direct Assay | biological_process | 730
Inferred from Electronic Annotation | biological_process | 520
Inferred from Experiment | biological_process | 231
Inferred from Expression Pattern | biological_process | 24
Inferred from Genetic Interaction | biological_process | 652
Inferred from high throughput direct assay | biological_process | 17
Inferred from Mutant Phenotype | biological_process | 3993
Inferred from Physical Interaction | biological_process | 111
Inferred from Sequence Model | biological_process | 202
Inferred from Sequence or Structural Similarity | biological_process | 585
Inferred from Sequence Orthology | biological_process | 2257
Non-traceable Author Statement | biological_process | 395
Traceable Author Statement | biological_process | 151
Inferred by Curator | cellular_component | 521
Inferred from Direct Assay | cellular_component | 5101
Inferred from Electronic Annotation | cellular_component | 1032
Inferred from Experiment | cellular_component | 192
Inferred from Genetic Interaction | cellular_component | 48
Inferred from high throughput direct assay | cellular_component | 6880
Inferred from Mutant Phenotype | cellular_component | 51
Inferred from Physical Interaction | cellular_component | 277
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence or Structural Similarity | cellular_component | 405
Inferred from Sequence Orthology | cellular_component | 1523
Non-traceable Author Statement | cellular_component | 184
Traceable Author Statement | cellular_component | 105
Non-traceable Author Statement | complementation | 1
cell growth assay evidence | fission_yeast_phenotype | 29884
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1480
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 809
competitive growth assay evidence | fission_yeast_phenotype | 1429
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 148
Enzyme assay data | fission_yeast_phenotype | 1761
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34
experimental phenotypic evidence | fission_yeast_phenotype | 493
Flow cytometry data | fission_yeast_phenotype | 1130
gel electrophoresis evidence | fission_yeast_phenotype | 2230
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Immunolocalization experiment data | fission_yeast_phenotype | 18
Microscopy | fission_yeast_phenotype | 34895
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1685
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 23
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 603
reporter gene assay evidence | fission_yeast_phenotype | 2263
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Substance quantification | fission_yeast_phenotype | 1026
transcript expression level evidence | fission_yeast_phenotype | 3445
Western blot assay | fission_yeast_phenotype | 3744
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
experimental evidence | gene_ex | 20336
expression microarray evidence | gene_ex | 2017
fusion protein localization evidence | gene_ex | 11
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
Northern assay evidence | gene_ex | 75
northern assay evidence used in manual assertion | gene_ex | 801
quantitative PCR | gene_ex | 88
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 59
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | gene_ex | 16
Western blot evidence | gene_ex | 25
western blot evidence used in manual assertion | gene_ex | 447
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 112
Inferred from Direct Assay | molecular_function | 1882
Inferred from Electronic Annotation | molecular_function | 1853
Inferred from Experiment | molecular_function | 410
Inferred from Genetic Interaction | molecular_function | 128
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 668
Inferred from Physical Interaction | molecular_function | 2254
Inferred from Sequence Model | molecular_function | 1240
Inferred from Sequence or Structural Similarity | molecular_function | 467
Inferred from Sequence Orthology | molecular_function | 1399
Non-traceable Author Statement | molecular_function | 153
Traceable Author Statement | molecular_function | 139
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
experimental evidence | PSI-MOD | 8141
Inferred from Direct Assay | PSI-MOD | 16528
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
mass spectrometry evidence | PSI-MOD | 2090
Traceable Author Statement | PSI-MOD | 1
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248
Inferred from Direct Assay | sequence | 2
Inferred from Mutant Phenotype | sequence | 7
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
(110 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Non-traceable Author Statement | complementation | 1
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Direct Assay | sequence | 2
Inferred from Physical Interaction | misc | 2
Inferred from Sequence Model | PSI-MOD | 2
Traceable Author Statement | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
Traceable Author Statement | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
Inferred from Mutant Phenotype | sequence | 7
Other direct assay | fission_yeast_phenotype | 9
fusion protein localization evidence | gene_ex | 11
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | gene_ex | 16
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | molecular_function | 17
Immunolocalization experiment data | fission_yeast_phenotype | 18
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Particle size and count assay | fission_yeast_phenotype | 23
Inferred from Expression Pattern | biological_process | 24
Western blot evidence | gene_ex | 25
ribosome profiling evidence | gene_ex | 32
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Genetic Interaction | cellular_component | 48
Inferred from Mutant Phenotype | cellular_component | 51
Chromatography evidence | fission_yeast_phenotype | 55
RNA protection assay evidence | gene_ex | 59
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60
Northern assay evidence | gene_ex | 75
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
Inferred from Biological aspect of Ancestor | biological_process | 82
quantitative PCR | gene_ex | 88
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence or Structural Similarity | warning | 102
Traceable Author Statement | cellular_component | 105
Inferred from Physical Interaction | biological_process | 111
Inferred by Curator | molecular_function | 112
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 128
Traceable Author Statement | molecular_function | 139
reporter gene assay evidence | gene_ex | 144
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 148
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
Traceable Author Statement | biological_process | 151
Non-traceable Author Statement | molecular_function | 153
Non-traceable Author Statement | cellular_component | 184
Inferred from Experiment | cellular_component | 192
Inferred from Sequence Model | biological_process | 202
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Experiment | biological_process | 231
Inferred from Physical Interaction | cellular_component | 277
Inferred from Sequence or Structural Similarity | sequence | 355
Non-traceable Author Statement | biological_process | 395
Inferred from Sequence or Structural Similarity | cellular_component | 405
Inferred from Experiment | molecular_function | 410
western blot evidence used in manual assertion | gene_ex | 447
Inferred from Sequence or Structural Similarity | molecular_function | 467
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Electronic Annotation | biological_process | 520
Inferred by Curator | cellular_component | 521
Inferred from Sequence or Structural Similarity | biological_process | 585
quantitative PCR | fission_yeast_phenotype | 603
Inferred from Genetic Interaction | biological_process | 652
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Inferred from Mutant Phenotype | molecular_function | 668
Inferred from Direct Assay | biological_process | 730
northern assay evidence used in manual assertion | gene_ex | 801
Co-immunoprecipitation experiment | fission_yeast_phenotype | 809
Substance quantification | fission_yeast_phenotype | 1026
Inferred from Electronic Annotation | cellular_component | 1032
Flow cytometry data | fission_yeast_phenotype | 1130
Inferred by Curator | biological_process | 1137
Inferred from Sequence Model | molecular_function | 1240
Inferred from Sequence Orthology | molecular_function | 1399
competitive growth assay evidence | fission_yeast_phenotype | 1429
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1480
Inferred from Sequence Orthology | cellular_component | 1523
Inferred from high throughput mutant phenotype | molecular_function | 1535
Other | fission_yeast_phenotype | 1685
Enzyme assay data | fission_yeast_phenotype | 1761
Inferred from Electronic Annotation | molecular_function | 1853
Inferred from Direct Assay | molecular_function | 1882
expression microarray evidence | gene_ex | 2017
mass spectrometry evidence | PSI-MOD | 2090
gel electrophoresis evidence | fission_yeast_phenotype | 2230
Inferred from Physical Interaction | molecular_function | 2254
Inferred from Sequence Orthology | biological_process | 2257
reporter gene assay evidence | fission_yeast_phenotype | 2263
transcript expression level evidence | fission_yeast_phenotype | 3445
Western blot assay | fission_yeast_phenotype | 3744
Inferred from Mutant Phenotype | biological_process | 3993
Inferred from Direct Assay | cellular_component | 5101
Inferred from high throughput direct assay | cellular_component | 6880
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | gene_ex | 13688
Inferred from Direct Assay | PSI-MOD | 16528
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248
experimental evidence | gene_ex | 20336
cell growth assay evidence | fission_yeast_phenotype | 29884
Microscopy | fission_yeast_phenotype | 34895
(110 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
cell growth assay evidence | fission_yeast_phenotype | 29884
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1480
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 809
competitive growth assay evidence | fission_yeast_phenotype | 1429
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 148
Enzyme assay data | fission_yeast_phenotype | 1761
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34
experimental evidence | gene_ex | 20336
experimental evidence | PSI-MOD | 8141
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 2017
Flow cytometry data | fission_yeast_phenotype | 1130
fusion protein localization evidence | gene_ex | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2230
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred by Curator | biological_process | 1137
Inferred by Curator | cellular_component | 521
Inferred by Curator | molecular_function | 112
Inferred from Biological aspect of Ancestor | biological_process | 82
Inferred from Direct Assay | biological_process | 730
Inferred from Direct Assay | cellular_component | 5101
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1882
Inferred from Direct Assay | PSI-MOD | 16528
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 520
Inferred from Electronic Annotation | cellular_component | 1032
Inferred from Electronic Annotation | molecular_function | 1853
Inferred from Experiment | biological_process | 231
Inferred from Experiment | cellular_component | 192
Inferred from Experiment | molecular_function | 410
Inferred from Expression Pattern | biological_process | 24
Inferred from Genetic Interaction | biological_process | 652
Inferred from Genetic Interaction | cellular_component | 48
Inferred from Genetic Interaction | molecular_function | 128
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6880
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | biological_process | 3993
Inferred from Mutant Phenotype | cellular_component | 51
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 668
Inferred from Mutant Phenotype | sequence | 7
Inferred from Physical Interaction | biological_process | 111
Inferred from Physical Interaction | cellular_component | 277
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2254
Inferred from Sequence Model | biological_process | 202
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence Model | molecular_function | 1240
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | biological_process | 585
Inferred from Sequence or Structural Similarity | cellular_component | 405
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 467
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
Inferred from Sequence Orthology | biological_process | 2257
Inferred from Sequence Orthology | cellular_component | 1523
Inferred from Sequence Orthology | molecular_function | 1399
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
mass spectrometry evidence | PSI-MOD | 2090
Microscopy | fission_yeast_phenotype | 34895
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Non-traceable Author Statement | biological_process | 395
Non-traceable Author Statement | cellular_component | 184
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 153
Northern assay evidence | fission_yeast_phenotype | 118
Northern assay evidence | gene_ex | 75
northern assay evidence used in manual assertion | gene_ex | 801
Other | fission_yeast_phenotype | 1685
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 23
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 603
quantitative PCR | gene_ex | 88
reporter gene assay evidence | fission_yeast_phenotype | 2263
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 59
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Substance quantification | fission_yeast_phenotype | 1026
Traceable Author Statement | biological_process | 151
Traceable Author Statement | cellular_component | 105
Traceable Author Statement | molecular_function | 139
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | sequence | 2
transcript expression level evidence | fission_yeast_phenotype | 3445
transcript expression level evidence | gene_ex | 16
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248
Western blot assay | fission_yeast_phenotype | 3744
Western blot evidence | gene_ex | 25
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
western blot evidence used in manual assertion | gene_ex | 447
(110 rows)
total:
count
--------
310997
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
1246 | PSI-MOD
2484 | molecular_function
2736 | cellular_component
3425 | biological_process
27988 | PomBase annotation extension terms
33610 | fission_yeast_phenotype
(6 rows)
total
-------
71489
(1 row)