counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 30 | pathway 90 | m_f_g 187 | subunit_composition 237 | genome_org 416 | misc 446 | complementation 833 | EC numbers 954 | sequence 965 | name_description 1766 | warning 1868 | PomBase family or domain 2527 | disease_ontology 5136 | PomBase gene characterisation status 10942 | biological_process 12280 | molecular_function 16402 | cellular_component 25072 | species_dist 37849 | gene_ex 47179 | PSI-MOD 57304 | PomBase gene products 88612 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 1163 Inferred from Biological aspect of Ancestor | biological_process | 84 Inferred from Direct Assay | biological_process | 728 Inferred from Electronic Annotation | biological_process | 521 Inferred from Experiment | biological_process | 231 Inferred from Expression Pattern | biological_process | 25 Inferred from Genetic Interaction | biological_process | 636 Inferred from high throughput direct assay | biological_process | 17 Inferred from Mutant Phenotype | biological_process | 3874 Inferred from Physical Interaction | biological_process | 111 Inferred from Sequence Model | biological_process | 202 Inferred from Sequence or Structural Similarity | biological_process | 583 Inferred from Sequence Orthology | biological_process | 2225 Non-traceable Author Statement | biological_process | 395 Traceable Author Statement | biological_process | 147 Inferred by Curator | cellular_component | 521 Inferred from Direct Assay | cellular_component | 5093 Inferred from Electronic Annotation | cellular_component | 1014 Inferred from Experiment | cellular_component | 193 Inferred from Genetic Interaction | cellular_component | 48 Inferred from high throughput direct assay | cellular_component | 6875 Inferred from Mutant Phenotype | cellular_component | 51 Inferred from Physical Interaction | cellular_component | 277 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence or Structural Similarity | cellular_component | 403 Inferred from Sequence Orthology | cellular_component | 1537 Non-traceable Author Statement | cellular_component | 185 Traceable Author Statement | cellular_component | 104 Non-traceable Author Statement | complementation | 1 cell growth assay evidence | fission_yeast_phenotype | 29946 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1486 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 808 competitive growth assay evidence | fission_yeast_phenotype | 1429 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 148 Enzyme assay data | fission_yeast_phenotype | 1764 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34 experimental phenotypic evidence | fission_yeast_phenotype | 493 Flow cytometry data | fission_yeast_phenotype | 1130 gel electrophoresis evidence | fission_yeast_phenotype | 2238 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 35036 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1708 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 23 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 603 reporter gene assay evidence | fission_yeast_phenotype | 2286 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Substance quantification evidence | fission_yeast_phenotype | 1026 transcript expression level evidence | fission_yeast_phenotype | 3384 Western blot assay | fission_yeast_phenotype | 3753 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 experimental evidence | gene_ex | 20336 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 11 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 Northern assay evidence | gene_ex | 75 northern assay evidence used in manual assertion | gene_ex | 801 quantitative PCR | gene_ex | 88 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 59 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 16 Western blot evidence | gene_ex | 25 western blot evidence used in manual assertion | gene_ex | 448 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 115 Inferred from Direct Assay | molecular_function | 1875 Inferred from Electronic Annotation | molecular_function | 1857 Inferred from Experiment | molecular_function | 415 Inferred from Genetic Interaction | molecular_function | 129 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 668 Inferred from Physical Interaction | molecular_function | 2253 Inferred from Sequence Model | molecular_function | 1259 Inferred from Sequence or Structural Similarity | molecular_function | 468 Inferred from Sequence Orthology | molecular_function | 1397 Non-traceable Author Statement | molecular_function | 153 Traceable Author Statement | molecular_function | 138 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | PSI-MOD | 16536 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 mass spectrometry evidence | PSI-MOD | 2090 Traceable Author Statement | PSI-MOD | 1 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 7 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (110 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Key Residues | molecular_function | 1 Traceable Author Statement | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 7 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | gene_ex | 16 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | molecular_function | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Particle size and count assay | fission_yeast_phenotype | 23 Western blot evidence | gene_ex | 25 Inferred from Expression Pattern | biological_process | 25 ribosome profiling evidence | gene_ex | 32 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 48 Inferred from Mutant Phenotype | cellular_component | 51 Chromatography evidence | fission_yeast_phenotype | 55 RNA protection assay evidence | gene_ex | 59 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 Northern assay evidence | gene_ex | 75 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Inferred from Biological aspect of Ancestor | biological_process | 84 quantitative PCR | gene_ex | 88 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence or Structural Similarity | warning | 102 Traceable Author Statement | cellular_component | 104 Inferred from Physical Interaction | biological_process | 111 Inferred by Curator | molecular_function | 115 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 129 Traceable Author Statement | molecular_function | 138 reporter gene assay evidence | gene_ex | 144 Traceable Author Statement | biological_process | 147 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 148 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Non-traceable Author Statement | molecular_function | 153 Non-traceable Author Statement | cellular_component | 185 Inferred from Experiment | cellular_component | 193 Inferred from Sequence Model | biological_process | 202 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | biological_process | 231 Inferred from Physical Interaction | cellular_component | 277 Inferred from Sequence or Structural Similarity | sequence | 355 Non-traceable Author Statement | biological_process | 395 Inferred from Sequence or Structural Similarity | cellular_component | 403 Inferred from Experiment | molecular_function | 415 western blot evidence used in manual assertion | gene_ex | 448 Inferred from Sequence or Structural Similarity | molecular_function | 468 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Electronic Annotation | biological_process | 521 Inferred by Curator | cellular_component | 521 Inferred from Sequence or Structural Similarity | biological_process | 583 quantitative PCR | fission_yeast_phenotype | 603 Inferred from Genetic Interaction | biological_process | 636 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Inferred from Mutant Phenotype | molecular_function | 668 Inferred from Direct Assay | biological_process | 728 northern assay evidence used in manual assertion | gene_ex | 801 Co-immunoprecipitation experiment | fission_yeast_phenotype | 808 Inferred from Electronic Annotation | cellular_component | 1014 Substance quantification evidence | fission_yeast_phenotype | 1026 Flow cytometry data | fission_yeast_phenotype | 1130 Inferred by Curator | biological_process | 1163 Inferred from Sequence Model | molecular_function | 1259 Inferred from Sequence Orthology | molecular_function | 1397 competitive growth assay evidence | fission_yeast_phenotype | 1429 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1486 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Sequence Orthology | cellular_component | 1537 Other | fission_yeast_phenotype | 1708 Enzyme assay data | fission_yeast_phenotype | 1764 Inferred from Electronic Annotation | molecular_function | 1857 Inferred from Direct Assay | molecular_function | 1875 expression microarray evidence | gene_ex | 2017 mass spectrometry evidence | PSI-MOD | 2090 Inferred from Sequence Orthology | biological_process | 2225 gel electrophoresis evidence | fission_yeast_phenotype | 2238 Inferred from Physical Interaction | molecular_function | 2253 reporter gene assay evidence | fission_yeast_phenotype | 2286 transcript expression level evidence | fission_yeast_phenotype | 3384 Western blot assay | fission_yeast_phenotype | 3753 Inferred from Mutant Phenotype | biological_process | 3874 Inferred from Direct Assay | cellular_component | 5093 Inferred from high throughput direct assay | cellular_component | 6875 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16536 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248 experimental evidence | gene_ex | 20336 cell growth assay evidence | fission_yeast_phenotype | 29946 Microscopy | fission_yeast_phenotype | 35036 (110 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- cell growth assay evidence | fission_yeast_phenotype | 29946 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1486 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 808 competitive growth assay evidence | fission_yeast_phenotype | 1429 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 148 Enzyme assay data | fission_yeast_phenotype | 1764 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34 experimental evidence | gene_ex | 20336 experimental evidence | PSI-MOD | 8141 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2017 Flow cytometry data | fission_yeast_phenotype | 1130 fusion protein localization evidence | gene_ex | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2238 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1163 Inferred by Curator | cellular_component | 521 Inferred by Curator | molecular_function | 115 Inferred from Biological aspect of Ancestor | biological_process | 84 Inferred from Direct Assay | biological_process | 728 Inferred from Direct Assay | cellular_component | 5093 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1875 Inferred from Direct Assay | PSI-MOD | 16536 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 521 Inferred from Electronic Annotation | cellular_component | 1014 Inferred from Electronic Annotation | molecular_function | 1857 Inferred from Experiment | biological_process | 231 Inferred from Experiment | cellular_component | 193 Inferred from Experiment | molecular_function | 415 Inferred from Expression Pattern | biological_process | 25 Inferred from Genetic Interaction | biological_process | 636 Inferred from Genetic Interaction | cellular_component | 48 Inferred from Genetic Interaction | molecular_function | 129 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6875 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 3874 Inferred from Mutant Phenotype | cellular_component | 51 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 668 Inferred from Mutant Phenotype | sequence | 7 Inferred from Physical Interaction | biological_process | 111 Inferred from Physical Interaction | cellular_component | 277 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2253 Inferred from Sequence Model | biological_process | 202 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence Model | molecular_function | 1259 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | biological_process | 583 Inferred from Sequence or Structural Similarity | cellular_component | 403 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 468 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence Orthology | biological_process | 2225 Inferred from Sequence Orthology | cellular_component | 1537 Inferred from Sequence Orthology | molecular_function | 1397 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 mass spectrometry evidence | PSI-MOD | 2090 Microscopy | fission_yeast_phenotype | 35036 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Non-traceable Author Statement | biological_process | 395 Non-traceable Author Statement | cellular_component | 185 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 153 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 75 northern assay evidence used in manual assertion | gene_ex | 801 Other | fission_yeast_phenotype | 1708 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 23 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 603 quantitative PCR | gene_ex | 88 reporter gene assay evidence | fission_yeast_phenotype | 2286 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 59 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification evidence | fission_yeast_phenotype | 1026 Traceable Author Statement | biological_process | 147 Traceable Author Statement | cellular_component | 104 Traceable Author Statement | molecular_function | 138 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 transcript expression level evidence | fission_yeast_phenotype | 3384 transcript expression level evidence | gene_ex | 16 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248 Western blot assay | fission_yeast_phenotype | 3753 Western blot evidence | gene_ex | 25 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 448 (110 rows) total: count -------- 311150 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1253 | PSI-MOD 2489 | molecular_function 2755 | cellular_component 3385 | biological_process 28103 | PomBase annotation extension terms 33713 | fission_yeast_phenotype (6 rows) total ------- 71698 (1 row)