counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
22 | ex_tools
27 | cat_act
30 | pathway
90 | m_f_g
187 | subunit_composition
237 | genome_org
416 | misc
446 | complementation
831 | EC numbers
955 | sequence
965 | name_description
1779 | warning
1868 | PomBase family or domain
2588 | disease_ontology
5135 | PomBase gene characterisation status
10948 | biological_process
12317 | molecular_function
16464 | cellular_component
25076 | species_dist
37849 | gene_ex
47180 | PSI-MOD
57391 | PomBase gene products
89096 | fission_yeast_phenotype
(24 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Inferred by Curator | biological_process | 1164
Inferred from Biological aspect of Ancestor | biological_process | 82
Inferred from Direct Assay | biological_process | 729
Inferred from Electronic Annotation | biological_process | 520
Inferred from Experiment | biological_process | 229
Inferred from Expression Pattern | biological_process | 25
Inferred from Genetic Interaction | biological_process | 634
Inferred from high throughput direct assay | biological_process | 17
Inferred from Mutant Phenotype | biological_process | 3889
Inferred from Physical Interaction | biological_process | 109
Inferred from Sequence Model | biological_process | 201
Inferred from Sequence or Structural Similarity | biological_process | 583
Inferred from Sequence Orthology | biological_process | 2226
Non-traceable Author Statement | biological_process | 394
Traceable Author Statement | biological_process | 146
Inferred by Curator | cellular_component | 519
Inferred from Direct Assay | cellular_component | 5130
Inferred from Electronic Annotation | cellular_component | 1013
Inferred from Experiment | cellular_component | 224
Inferred from Genetic Interaction | cellular_component | 48
Inferred from high throughput direct assay | cellular_component | 6873
Inferred from Mutant Phenotype | cellular_component | 51
Inferred from Physical Interaction | cellular_component | 277
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence or Structural Similarity | cellular_component | 403
Inferred from Sequence Orthology | cellular_component | 1537
Non-traceable Author Statement | cellular_component | 185
Traceable Author Statement | cellular_component | 103
Non-traceable Author Statement | complementation | 1
cell growth assay evidence | fission_yeast_phenotype | 30171
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1508
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 831
competitive growth assay evidence | fission_yeast_phenotype | 1429
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 151
Enzyme assay data | fission_yeast_phenotype | 1774
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34
experimental phenotypic evidence | fission_yeast_phenotype | 493
Flow cytometry data | fission_yeast_phenotype | 1133
gel electrophoresis evidence | fission_yeast_phenotype | 2245
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Immunolocalization experiment data | fission_yeast_phenotype | 18
Microscopy | fission_yeast_phenotype | 35146
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1715
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 28
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 615
reporter gene assay evidence | fission_yeast_phenotype | 2315
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Substance quantification | fission_yeast_phenotype | 1033
transcript expression level evidence | fission_yeast_phenotype | 3384
Western blot assay | fission_yeast_phenotype | 3775
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
experimental evidence | gene_ex | 20336
expression microarray evidence | gene_ex | 2017
fusion protein localization evidence | gene_ex | 11
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
Northern assay evidence | gene_ex | 75
northern assay evidence used in manual assertion | gene_ex | 801
quantitative PCR | gene_ex | 88
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 59
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | gene_ex | 16
Western blot evidence | gene_ex | 25
western blot evidence used in manual assertion | gene_ex | 448
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 115
Inferred from Direct Assay | molecular_function | 1882
Inferred from Electronic Annotation | molecular_function | 1868
Inferred from Experiment | molecular_function | 419
Inferred from Genetic Interaction | molecular_function | 128
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 675
Inferred from Physical Interaction | molecular_function | 2263
Inferred from Sequence Model | molecular_function | 1257
Inferred from Sequence or Structural Similarity | molecular_function | 468
Inferred from Sequence Orthology | molecular_function | 1398
Non-traceable Author Statement | molecular_function | 153
Traceable Author Statement | molecular_function | 138
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
experimental evidence | PSI-MOD | 8141
Inferred from Direct Assay | PSI-MOD | 16537
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
mass spectrometry evidence | PSI-MOD | 2090
Traceable Author Statement | PSI-MOD | 1
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248
Inferred from Direct Assay | sequence | 2
Inferred from Mutant Phenotype | sequence | 8
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
(110 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
Non-traceable Author Statement | complementation | 1
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Direct Assay | sequence | 2
Inferred from Physical Interaction | misc | 2
Inferred from Sequence Model | PSI-MOD | 2
Traceable Author Statement | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
Traceable Author Statement | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
Inferred from Mutant Phenotype | sequence | 8
Other direct assay | fission_yeast_phenotype | 9
fusion protein localization evidence | gene_ex | 11
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | gene_ex | 16
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | molecular_function | 17
Immunolocalization experiment data | fission_yeast_phenotype | 18
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Western blot evidence | gene_ex | 25
Inferred from Expression Pattern | biological_process | 25
Particle size and count assay | fission_yeast_phenotype | 28
ribosome profiling evidence | gene_ex | 32
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Genetic Interaction | cellular_component | 48
Inferred from Mutant Phenotype | cellular_component | 51
Chromatography evidence | fission_yeast_phenotype | 55
RNA protection assay evidence | gene_ex | 59
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60
Northern assay evidence | gene_ex | 75
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
Inferred from Biological aspect of Ancestor | biological_process | 82
quantitative PCR | gene_ex | 88
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence or Structural Similarity | warning | 102
Traceable Author Statement | cellular_component | 103
Inferred from Physical Interaction | biological_process | 109
Inferred by Curator | molecular_function | 115
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 128
Traceable Author Statement | molecular_function | 138
reporter gene assay evidence | gene_ex | 144
Traceable Author Statement | biological_process | 146
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 151
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
Non-traceable Author Statement | molecular_function | 153
Non-traceable Author Statement | cellular_component | 185
Inferred from Sequence Model | biological_process | 201
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Experiment | cellular_component | 224
Inferred from Experiment | biological_process | 229
Inferred from Physical Interaction | cellular_component | 277
Inferred from Sequence or Structural Similarity | sequence | 355
Non-traceable Author Statement | biological_process | 394
Inferred from Sequence or Structural Similarity | cellular_component | 403
Inferred from Experiment | molecular_function | 419
western blot evidence used in manual assertion | gene_ex | 448
Inferred from Sequence or Structural Similarity | molecular_function | 468
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred by Curator | cellular_component | 519
Inferred from Electronic Annotation | biological_process | 520
Inferred from Sequence or Structural Similarity | biological_process | 583
quantitative PCR | fission_yeast_phenotype | 615
Inferred from Genetic Interaction | biological_process | 634
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Inferred from Mutant Phenotype | molecular_function | 675
Inferred from Direct Assay | biological_process | 729
northern assay evidence used in manual assertion | gene_ex | 801
Co-immunoprecipitation experiment | fission_yeast_phenotype | 831
Inferred from Electronic Annotation | cellular_component | 1013
Substance quantification | fission_yeast_phenotype | 1033
Flow cytometry data | fission_yeast_phenotype | 1133
Inferred by Curator | biological_process | 1164
Inferred from Sequence Model | molecular_function | 1257
Inferred from Sequence Orthology | molecular_function | 1398
competitive growth assay evidence | fission_yeast_phenotype | 1429
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1508
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Sequence Orthology | cellular_component | 1537
Other | fission_yeast_phenotype | 1715
Enzyme assay data | fission_yeast_phenotype | 1774
Inferred from Electronic Annotation | molecular_function | 1868
Inferred from Direct Assay | molecular_function | 1882
expression microarray evidence | gene_ex | 2017
mass spectrometry evidence | PSI-MOD | 2090
Inferred from Sequence Orthology | biological_process | 2226
gel electrophoresis evidence | fission_yeast_phenotype | 2245
Inferred from Physical Interaction | molecular_function | 2263
reporter gene assay evidence | fission_yeast_phenotype | 2315
transcript expression level evidence | fission_yeast_phenotype | 3384
Western blot assay | fission_yeast_phenotype | 3775
Inferred from Mutant Phenotype | biological_process | 3889
Inferred from Direct Assay | cellular_component | 5130
Inferred from high throughput direct assay | cellular_component | 6873
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | gene_ex | 13688
Inferred from Direct Assay | PSI-MOD | 16537
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248
experimental evidence | gene_ex | 20336
cell growth assay evidence | fission_yeast_phenotype | 30171
Microscopy | fission_yeast_phenotype | 35146
(110 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
---------------------------------------------------------------------------+--------------------------+-------
cell growth assay evidence | fission_yeast_phenotype | 30171
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1508
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 831
competitive growth assay evidence | fission_yeast_phenotype | 1429
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 151
Enzyme assay data | fission_yeast_phenotype | 1774
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34
experimental evidence | gene_ex | 20336
experimental evidence | PSI-MOD | 8141
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 2017
Flow cytometry data | fission_yeast_phenotype | 1133
fusion protein localization evidence | gene_ex | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2245
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred by Curator | biological_process | 1164
Inferred by Curator | cellular_component | 519
Inferred by Curator | molecular_function | 115
Inferred from Biological aspect of Ancestor | biological_process | 82
Inferred from Direct Assay | biological_process | 729
Inferred from Direct Assay | cellular_component | 5130
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1882
Inferred from Direct Assay | PSI-MOD | 16537
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 520
Inferred from Electronic Annotation | cellular_component | 1013
Inferred from Electronic Annotation | molecular_function | 1868
Inferred from Experiment | biological_process | 229
Inferred from Experiment | cellular_component | 224
Inferred from Experiment | molecular_function | 419
Inferred from Expression Pattern | biological_process | 25
Inferred from Genetic Interaction | biological_process | 634
Inferred from Genetic Interaction | cellular_component | 48
Inferred from Genetic Interaction | molecular_function | 128
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6873
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | biological_process | 3889
Inferred from Mutant Phenotype | cellular_component | 51
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 675
Inferred from Mutant Phenotype | sequence | 8
Inferred from Physical Interaction | biological_process | 109
Inferred from Physical Interaction | cellular_component | 277
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2263
Inferred from Sequence Model | biological_process | 201
Inferred from Sequence Model | cellular_component | 101
Inferred from Sequence Model | molecular_function | 1257
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | biological_process | 583
Inferred from Sequence or Structural Similarity | cellular_component | 403
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 468
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 102
Inferred from Sequence Orthology | biological_process | 2226
Inferred from Sequence Orthology | cellular_component | 1537
Inferred from Sequence Orthology | molecular_function | 1398
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
mass spectrometry evidence | PSI-MOD | 2090
Microscopy | fission_yeast_phenotype | 35146
microscopy evidence used in manual assertion | fission_yeast_phenotype | 660
Non-traceable Author Statement | biological_process | 394
Non-traceable Author Statement | cellular_component | 185
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 153
Northern assay evidence | fission_yeast_phenotype | 118
Northern assay evidence | gene_ex | 75
northern assay evidence used in manual assertion | gene_ex | 801
Other | fission_yeast_phenotype | 1715
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 28
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | fission_yeast_phenotype | 615
quantitative PCR | gene_ex | 88
reporter gene assay evidence | fission_yeast_phenotype | 2315
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60
ribosome profiling evidence | gene_ex | 32
RNA protection assay evidence | gene_ex | 59
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
Substance quantification | fission_yeast_phenotype | 1033
Traceable Author Statement | biological_process | 146
Traceable Author Statement | cellular_component | 103
Traceable Author Statement | molecular_function | 138
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | sequence | 2
transcript expression level evidence | fission_yeast_phenotype | 3384
transcript expression level evidence | gene_ex | 16
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248
Western blot assay | fission_yeast_phenotype | 3775
Western blot evidence | gene_ex | 25
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
western blot evidence used in manual assertion | gene_ex | 448
(110 rows)
total:
count
--------
311903
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
1253 | PSI-MOD
2505 | molecular_function
2824 | cellular_component
3416 | biological_process
28356 | PomBase annotation extension terms
33987 | fission_yeast_phenotype
(6 rows)
total
-------
72341
(1 row)